Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99990 * 2 1 4 4 N 1.46900 * 109.47021 * 124.16208 * 3 2 1 5 5 C 1.46907 * 111.00018 * 301.54325 * 4 3 2 6 6 C 1.50701 * 109.46854 * 288.93781 * 5 4 3 7 7 H 1.08001 * 120.00263 * 354.87137 * 6 5 4 8 8 C 1.37873 * 120.00159 * 174.86319 * 6 5 4 9 9 N 1.31521 * 119.99921 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00488 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46980 * 90.00134 * 10 8 6 12 12 H 1.48492 * 109.47579 * 210.00687 * 10 8 6 13 13 H 1.48506 * 109.46914 * 330.00911 * 10 8 6 14 14 C 1.46896 * 111.00035 * 65.49457 * 4 3 2 15 15 C 1.50695 * 109.47056 * 66.04779 * 14 4 3 16 16 C 1.38170 * 120.02984 * 259.72014 * 15 14 4 17 17 C 1.38241 * 120.06070 * 179.79182 * 16 15 14 18 18 C 1.50697 * 119.94849 * 180.25482 * 17 16 15 19 19 C 1.38295 * 120.10736 * 0.46562 * 17 16 15 20 20 C 1.38122 * 120.05587 * 359.78945 * 19 17 16 21 21 C 1.50702 * 120.02814 * 179.97438 * 20 19 17 22 22 C 1.38713 * 120.02875 * 80.00009 * 15 14 4 23 23 O 1.35889 * 120.05592 * 359.95597 * 22 15 14 24 24 H 1.08005 * 119.99879 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00014 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99561 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46949 * 4.16222 * 3 2 1 28 28 H 1.08993 * 109.46933 * 244.15954 * 3 2 1 29 29 H 1.08996 * 109.47036 * 48.93568 * 5 4 3 30 30 H 1.08995 * 109.47381 * 168.94063 * 5 4 3 31 31 H 0.96998 * 119.99890 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47596 * 306.04623 * 14 4 3 33 33 H 1.09006 * 109.47136 * 186.04892 * 14 4 3 34 34 H 1.08005 * 119.96466 * 0.02816 * 16 15 14 35 35 H 1.08994 * 109.47229 * 270.21324 * 18 17 16 36 36 H 1.09006 * 109.46846 * 30.20947 * 18 17 16 37 37 H 1.09001 * 109.46916 * 150.20757 * 18 17 16 38 38 H 1.08000 * 119.96583 * 179.76947 * 19 17 16 39 39 H 1.09000 * 109.47021 * 270.02610 * 21 20 19 40 40 H 1.09006 * 109.46451 * 30.02574 * 21 20 19 41 41 H 1.08998 * 109.47229 * 150.02045 * 21 20 19 42 42 H 0.96696 * 114.00398 * 90.00061 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9819 1.3403 1.1460 5 6 2.2515 1.1835 2.4110 6 6 1.4554 2.4324 2.6894 7 1 1.5525 3.2905 2.0409 8 6 0.6031 2.4796 3.7721 9 7 0.4851 1.4348 4.5622 10 14 -0.3832 4.0279 4.1178 11 1 -1.6865 3.9528 3.4102 12 1 -0.6193 4.1486 5.5788 13 1 0.3724 5.2133 3.6388 14 6 4.0292 0.3189 1.0129 15 6 4.9104 0.6534 -0.1630 16 6 4.7296 0.0042 -1.3693 17 6 5.5347 0.3136 -2.4496 18 6 5.3316 -0.3918 -3.7657 19 6 6.5292 1.2663 -2.3233 20 6 6.7174 1.9143 -1.1181 21 6 7.8016 2.9520 -0.9811 22 6 5.9074 1.6090 -0.0336 23 8 6.0904 2.2454 1.1530 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3575 2.1322 0.0746 28 1 2.6330 1.3957 -0.9249 29 1 1.5762 0.3311 2.3373 30 1 2.9605 1.0163 3.2217 31 1 -0.1143 1.4681 5.3241 32 1 3.5681 -0.6562 0.8556 33 1 4.6303 0.2942 1.9219 34 1 3.9560 -0.7428 -1.4692 35 1 5.9453 -1.2921 -3.7939 36 1 4.2816 -0.6644 -3.8735 37 1 5.6206 0.2708 -4.5814 38 1 7.1593 1.5036 -3.1677 39 1 8.7257 2.4716 -0.6592 40 1 7.9614 3.4396 -1.9428 41 1 7.5020 3.6952 -0.2422 42 1 6.7128 1.8018 1.7454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793561642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = -23.140784 kcal Electronic energy + Delta-G solvation = -21569.034153 eV Core-core repulsion = 18513.556924 eV Total energy + Delta-G solvation = -3055.477228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12523 -38.82427 -37.71872 -34.88308 -34.33464 -33.60209 -32.54525 -29.28772 -28.19271 -27.64459 -26.85273 -25.61717 -22.85650 -21.93542 -21.55465 -20.14413 -19.09631 -18.33671 -17.33489 -16.88988 -16.51175 -16.08298 -16.02769 -15.49474 -15.31272 -14.81134 -14.47330 -14.23576 -14.03701 -13.87680 -13.76028 -13.43725 -13.35657 -13.09876 -12.85676 -12.79280 -12.63407 -12.35552 -12.28674 -12.24916 -12.11081 -11.98674 -11.84823 -11.36397 -11.07888 -10.58392 -10.20547 -9.54263 -9.15040 -8.88192 -8.15879 -6.24605 0.38910 0.42113 1.39229 1.40506 1.44494 1.52303 2.41472 2.68281 3.16045 3.46743 3.55062 3.83777 3.91556 4.00793 4.06430 4.26126 4.36115 4.44728 4.52839 4.57245 4.68895 4.73739 4.76395 4.83339 4.90941 4.95245 4.98364 5.08537 5.10402 5.22452 5.26041 5.34914 5.39338 5.53301 5.65066 5.69506 5.70680 5.73327 5.90657 6.05676 6.13127 6.41754 6.67651 6.90844 7.01102 7.43995 8.94030 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.005135 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.429342 B = 5451.069976 C = 6303.113467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.186 4.186 3 C 0.097 3.903 4 N -0.525 5.525 5 C 0.211 3.789 6 C -0.513 4.513 7 H 0.051 0.949 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.270 1.270 14 C 0.102 3.898 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.105 4.105 22 C 0.101 3.899 23 O -0.500 6.500 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.077 0.923 29 H -0.017 1.017 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.649 -3.798 -15.674 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.205 4.205 3 C -0.031 4.031 4 N -0.248 5.248 5 C 0.085 3.915 6 C -0.551 4.551 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.195 1.195 14 C -0.026 4.026 15 C -0.104 4.104 16 C -0.133 4.133 17 C -0.097 4.097 18 C -0.165 4.165 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.162 4.162 22 C 0.056 3.944 23 O -0.311 6.311 24 H 0.125 0.875 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.001 0.999 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.167 0.833 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.409 -2.971 -15.710 20.239 hybrid contribution -0.898 -0.527 1.210 1.596 sum 11.511 -3.497 -14.501 18.841 Atomic orbital electron populations 1.23839 0.96037 1.01734 1.00046 1.23508 0.96902 0.99484 1.00650 1.21121 0.94140 0.94206 0.93629 1.62275 1.12934 1.46846 1.02717 1.19355 0.91084 0.95326 0.85713 1.21351 1.23200 0.99801 1.10790 0.93048 1.25763 0.98016 0.99439 0.95829 1.70076 1.39022 1.31296 1.16894 0.85516 0.78897 0.79717 0.77307 1.19786 1.20613 1.19482 1.20786 0.92708 0.93055 0.96024 1.20169 0.97231 0.97009 0.95993 1.20946 1.00175 1.00458 0.91748 1.20165 0.95571 0.97479 0.96441 1.20792 1.02817 1.00430 0.92412 1.21079 0.98540 0.96389 0.97060 1.20472 0.98208 0.99673 0.93703 1.20664 0.95852 0.96388 1.03253 1.18320 0.95632 0.93365 0.87066 1.84882 1.67971 1.51331 1.26875 0.87455 0.89515 0.87402 0.92571 0.90517 0.99887 0.98876 0.92853 0.94665 0.91862 0.85736 0.90043 0.91433 0.90182 0.83298 0.89939 0.90107 0.92292 0.74843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.50 14.32 67.78 0.97 -5.53 16 2 C -0.19 -6.97 7.39 25.64 0.19 -6.78 16 3 C 0.10 3.99 5.44 85.56 0.47 4.46 16 4 N -0.53 -23.97 4.65 -909.95 -4.24 -28.21 16 5 C 0.21 11.58 4.57 85.56 0.39 11.97 16 6 C -0.51 -30.19 8.53 25.60 0.22 -29.97 16 7 H 0.05 3.06 7.61 -2.91 -0.02 3.04 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 10 Si 0.96 45.80 29.54 68.60 2.03 47.82 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.10 3.88 4.61 85.56 0.39 4.28 16 15 C -0.10 -3.34 4.59 -19.77 -0.09 -3.43 16 16 C -0.11 -3.13 8.25 22.25 0.18 -2.95 16 17 C -0.10 -2.17 5.88 -19.85 -0.12 -2.29 16 18 C -0.11 -1.67 10.01 71.23 0.71 -0.95 16 19 C -0.11 -2.45 9.35 22.26 0.21 -2.24 16 20 C -0.12 -3.04 5.89 -19.77 -0.12 -3.16 16 21 C -0.11 -2.08 9.79 71.24 0.70 -1.39 16 22 C 0.10 3.16 6.65 22.51 0.15 3.31 16 23 O -0.50 -16.29 11.78 -92.30 -1.09 -17.38 16 24 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 25 H 0.09 3.31 7.84 -2.91 -0.02 3.28 16 26 H 0.11 3.72 6.84 -2.91 -0.02 3.70 16 27 H 0.06 2.57 7.01 -2.39 -0.02 2.55 16 28 H 0.08 2.89 6.35 -2.39 -0.02 2.88 16 29 H -0.02 -0.96 6.68 -2.39 -0.02 -0.98 16 30 H -0.01 -0.41 7.83 -2.39 -0.02 -0.43 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.04 1.29 6.27 -2.39 -0.01 1.28 16 33 H 0.06 2.48 7.58 -2.38 -0.02 2.46 16 34 H 0.12 3.19 8.03 -2.91 -0.02 3.16 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.03 8.09 -2.38 -0.02 1.01 16 37 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.30 8.09 -2.38 -0.02 1.28 16 41 H 0.06 1.36 7.53 -2.39 -0.02 1.34 16 42 H 0.39 9.21 9.06 -74.06 -0.67 8.54 16 Total: -1.00 -69.87 344.91 2.04 -67.84 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.33 Total: 20.37 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 4.72 Total: -33.79 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.95 Total: -84.87 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.09 Total: -17.38 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.87 2.04 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793561642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.698 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds