Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.94443 * 2 1 4 4 C 1.38120 * 120.05433 * 180.02562 * 3 2 1 5 5 C 1.38752 * 119.94393 * 359.76670 * 4 3 2 6 6 O 1.35902 * 120.05653 * 180.27639 * 5 4 3 7 7 C 1.38714 * 119.88976 * 0.48763 * 5 4 3 8 8 C 1.50702 * 120.02832 * 179.79549 * 7 5 4 9 9 H 1.08998 * 109.46984 * 322.27412 * 8 7 5 10 10 C 1.52995 * 109.47472 * 82.27760 * 8 7 5 11 11 N 1.46901 * 109.46767 * 202.27775 * 8 7 5 12 12 C 1.46902 * 110.99811 * 156.71648 * 11 8 7 13 13 C 1.52998 * 109.47125 * 174.17493 * 12 11 8 14 14 C 1.50706 * 115.55081 * 280.13769 * 13 12 11 15 15 H 1.07991 * 119.99862 * 144.16967 * 14 13 12 16 16 C 1.37879 * 119.99683 * 324.16971 * 14 13 12 17 17 N 1.31513 * 119.99984 * 338.39202 * 16 14 13 18 18 Si 1.86800 * 119.99641 * 158.38516 * 16 14 13 19 19 H 1.48494 * 109.46814 * 90.00196 * 18 16 14 20 20 H 1.48501 * 109.46882 * 209.99873 * 18 16 14 21 21 H 1.48497 * 109.47111 * 330.00222 * 18 16 14 22 22 C 1.52998 * 117.50092 * 134.43027 * 13 12 11 23 23 C 1.52995 * 59.99980 * 252.51102 * 22 13 12 24 24 C 1.38166 * 119.94117 * 359.50901 * 7 5 4 25 25 H 1.09000 * 109.46928 * 269.97478 * 1 2 3 26 26 H 1.08998 * 109.47008 * 29.97754 * 1 2 3 27 27 H 1.09003 * 109.46953 * 149.97694 * 1 2 3 28 28 H 1.07990 * 119.97047 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.02684 * 180.02562 * 4 3 2 30 30 H 0.96697 * 114.00305 * 270.20809 * 6 5 4 31 31 H 1.09006 * 109.47296 * 180.02562 * 10 8 7 32 32 H 1.09005 * 109.47302 * 299.99953 * 10 8 7 33 33 H 1.08998 * 109.47299 * 59.99845 * 10 8 7 34 34 H 1.00900 * 111.00022 * 32.76167 * 11 8 7 35 35 H 1.09003 * 109.47013 * 294.17290 * 12 11 8 36 36 H 1.08998 * 109.47327 * 54.17549 * 12 11 8 37 37 H 0.96998 * 119.99518 * 185.13720 * 17 16 14 38 38 H 1.09007 * 117.49752 * 359.97438 * 22 13 12 39 39 H 1.08999 * 117.50326 * 145.02016 * 22 13 12 40 40 H 1.09005 * 117.49982 * 252.50701 * 23 22 13 41 41 H 1.09005 * 117.52001 * 107.48496 * 23 22 13 42 42 H 1.08001 * 119.96573 * 180.25347 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 0.0038 6 8 5.6324 -0.0001 0.0090 7 6 3.5787 -1.2007 -0.0015 8 6 4.3303 -2.5069 -0.0015 9 1 5.2184 -2.4150 -0.6266 10 6 4.7471 -2.8555 1.4287 11 7 3.4656 -3.5693 -0.5322 12 6 4.2644 -4.6824 -1.0622 13 6 3.3354 -5.8273 -1.4713 14 6 2.8470 -6.7019 -0.3454 15 1 1.8458 -7.1060 -0.3709 16 6 3.6784 -6.9863 0.7171 17 7 4.9818 -6.8774 0.5796 18 14 2.9535 -7.5259 2.3519 19 1 2.8295 -9.0055 2.3741 20 1 3.8432 -7.0870 3.4569 21 1 1.6114 -6.9141 2.5243 22 6 3.5891 -6.4936 -2.8250 23 6 2.3780 -5.5775 -2.6382 24 6 2.1970 -1.1979 -0.0009 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6559 2.1327 0.0004 29 1 4.1171 2.1370 -0.0001 30 1 6.0291 0.0018 -0.8729 31 1 5.2911 -3.8001 1.4287 32 1 5.3886 -2.0671 1.8226 33 1 3.8589 -2.9473 2.0539 34 1 2.8383 -3.2077 -1.2349 35 1 4.8280 -4.3436 -1.9315 36 1 4.9552 -5.0316 -0.2948 37 1 5.5699 -7.1483 1.3019 38 1 4.4176 -6.1160 -3.4244 39 1 3.4029 -7.5648 -2.9015 40 1 1.3949 -6.0461 -2.5918 41 1 2.4095 -4.5975 -3.1143 42 1 1.6557 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797586960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = 4.219973 kcal Electronic energy + Delta-G solvation = -21671.984091 eV Core-core repulsion = 18617.693314 eV Total energy + Delta-G solvation = -3054.290777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.00399 -37.20147 -36.81665 -35.20162 -32.09834 -31.67968 -30.73380 -28.76588 -26.19924 -25.68651 -24.52309 -23.07743 -21.44568 -21.04201 -19.63178 -18.93605 -18.22446 -16.40319 -15.99405 -15.56173 -15.05497 -14.63743 -14.38323 -13.88183 -13.72371 -13.48703 -13.46526 -13.27014 -12.84903 -12.53754 -12.10666 -11.70988 -11.65959 -11.44480 -11.36953 -11.26461 -11.16750 -10.85231 -10.78668 -10.42332 -10.32123 -10.19380 -10.00395 -9.22517 -9.09999 -8.67798 -8.63639 -8.27288 -7.92038 -7.45089 -6.01166 -3.93045 1.31324 1.45878 3.33394 3.42324 3.49387 3.69309 4.32098 4.46136 4.73096 4.87308 4.94652 5.03740 5.16344 5.37410 5.47611 5.62477 5.64632 5.71765 5.75014 5.85311 5.95547 6.08456 6.18223 6.20744 6.33648 6.37461 6.40987 6.53823 6.61715 6.64928 6.71182 6.73195 6.78525 6.89741 6.99230 7.00407 7.14521 7.37873 7.68144 7.73269 8.05085 8.07711 8.30172 8.58261 8.97482 9.61839 11.03199 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.005362 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.656261 B = 5221.165547 C = 5309.044315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.146 4.146 5 C 0.097 3.903 6 O -0.495 6.495 7 C -0.096 4.096 8 C 0.134 3.866 9 H 0.041 0.959 10 C -0.128 4.128 11 N -0.667 5.667 12 C 0.088 3.912 13 C 0.068 3.932 14 C -0.478 4.478 15 H 0.057 0.943 16 C 0.081 3.919 17 N -0.874 5.874 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.207 4.207 23 C -0.212 4.212 24 C -0.091 4.091 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.384 0.616 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.324 0.676 35 H -0.011 1.011 36 H 0.124 0.876 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 14.978 -2.104 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.134 4.134 4 C -0.164 4.164 5 C 0.053 3.947 6 O -0.304 6.304 7 C -0.097 4.097 8 C 0.024 3.976 9 H 0.059 0.941 10 C -0.185 4.185 11 N -0.298 5.298 12 C -0.040 4.040 13 C 0.067 3.933 14 C -0.515 4.515 15 H 0.076 0.924 16 C -0.121 4.121 17 N -0.512 5.512 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.245 4.245 23 C -0.250 4.250 24 C -0.109 4.109 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.239 0.761 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.007 0.993 36 H 0.142 0.858 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.744 14.710 -0.736 14.982 hybrid contribution 0.142 0.126 -0.602 0.631 sum -2.601 14.836 -1.338 15.122 Atomic orbital electron populations 1.20771 0.91162 1.02684 1.02299 1.19969 0.96216 0.93035 1.00461 1.20826 0.93454 0.97526 1.01578 1.21284 0.94544 0.97374 1.03223 1.18305 0.82805 0.91748 1.01887 1.84844 1.16035 1.96442 1.33105 1.20514 0.94356 0.94804 1.00022 1.20191 0.93305 0.86744 0.97395 0.94148 1.21683 1.01029 1.01227 0.94598 1.60533 1.20286 1.08214 1.40746 1.21851 0.95475 0.88558 0.98112 1.18873 0.93821 0.94091 0.86467 1.20342 0.99148 1.29525 1.02478 0.92443 1.24821 0.94443 0.94613 0.98269 1.69864 1.02362 1.46348 1.32592 0.86731 0.79753 0.78156 0.84196 1.21113 1.21121 1.19668 1.22997 0.97872 0.97415 1.06227 1.22796 0.94684 0.98694 1.08810 1.21069 0.93180 0.98385 0.98247 0.91262 0.91903 0.91195 0.86172 0.85898 0.76056 0.91453 0.93283 0.92512 0.85796 0.99323 0.85813 0.92936 0.92153 0.90467 0.90780 0.92060 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.10 -1.24 5.88 -104.60 -0.62 -1.85 16 3 C -0.12 -1.37 9.69 -39.61 -0.38 -1.75 16 4 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 5 C 0.10 1.39 6.68 -39.22 -0.26 1.13 16 6 O -0.49 -6.57 12.69 -19.43 -0.25 -6.81 16 7 C -0.10 -1.52 4.97 -104.47 -0.52 -2.04 16 8 C 0.13 2.40 2.51 -68.87 -0.17 2.22 16 9 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 10 C -0.13 -2.41 9.37 37.15 0.35 -2.06 16 11 N -0.67 -13.42 5.51 -107.95 -0.59 -14.02 16 12 C 0.09 2.03 5.14 -3.82 -0.02 2.01 16 13 C 0.07 1.68 1.94 -155.66 -0.30 1.38 16 14 C -0.48 -12.98 8.98 -34.44 -0.31 -13.29 16 15 H 0.06 1.58 7.90 -52.49 -0.41 1.17 16 16 C 0.08 2.20 5.04 -17.82 -0.09 2.11 16 17 N -0.87 -24.01 11.12 55.43 0.62 -23.39 16 18 Si 0.88 21.20 29.59 -169.99 -5.03 16.17 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.21 -4.76 9.88 -26.73 -0.26 -5.02 16 23 C -0.21 -4.60 9.62 -26.74 -0.26 -4.85 16 24 C -0.09 -1.36 8.53 -39.61 -0.34 -1.70 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.38 3.44 9.06 45.56 0.41 3.85 16 31 H 0.07 1.41 7.27 -51.93 -0.38 1.03 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.32 6.12 6.89 -39.29 -0.27 5.85 16 35 H -0.01 -0.25 7.95 -51.93 -0.41 -0.67 16 36 H 0.12 3.19 4.48 -51.93 -0.23 2.96 16 37 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 38 H 0.06 1.31 8.09 -51.92 -0.42 0.89 16 39 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.20 8.07 -51.93 -0.42 0.79 16 42 H 0.14 2.27 6.87 -52.49 -0.36 1.91 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -28.95 343.87 -9.11 -38.06 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.82 Total: 11.54 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -3.22 Total: -26.73 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.02 Total: -37.41 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.25 Total: -6.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.95 -9.11 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.284 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds