Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.94443 * 2 1 4 4 C 1.38120 * 120.05433 * 180.02562 * 3 2 1 5 5 C 1.38752 * 119.94393 * 359.76670 * 4 3 2 6 6 O 1.35902 * 120.05653 * 180.27639 * 5 4 3 7 7 C 1.38714 * 119.88976 * 0.48763 * 5 4 3 8 8 C 1.50702 * 120.02832 * 179.79549 * 7 5 4 9 9 H 1.08998 * 109.46984 * 322.27412 * 8 7 5 10 10 C 1.52995 * 109.47472 * 82.27760 * 8 7 5 11 11 N 1.46901 * 109.46767 * 202.27775 * 8 7 5 12 12 C 1.46902 * 110.99811 * 156.71648 * 11 8 7 13 13 C 1.52998 * 109.47125 * 174.17493 * 12 11 8 14 14 C 1.50706 * 115.55081 * 280.13769 * 13 12 11 15 15 H 1.07991 * 119.99862 * 144.16967 * 14 13 12 16 16 C 1.37879 * 119.99683 * 324.16971 * 14 13 12 17 17 N 1.31513 * 119.99984 * 338.39202 * 16 14 13 18 18 Si 1.86800 * 119.99641 * 158.38516 * 16 14 13 19 19 H 1.48494 * 109.46814 * 90.00196 * 18 16 14 20 20 H 1.48501 * 109.46882 * 209.99873 * 18 16 14 21 21 H 1.48497 * 109.47111 * 330.00222 * 18 16 14 22 22 C 1.52998 * 117.50092 * 134.43027 * 13 12 11 23 23 C 1.52995 * 59.99980 * 252.51102 * 22 13 12 24 24 C 1.38166 * 119.94117 * 359.50901 * 7 5 4 25 25 H 1.09000 * 109.46928 * 269.97478 * 1 2 3 26 26 H 1.08998 * 109.47008 * 29.97754 * 1 2 3 27 27 H 1.09003 * 109.46953 * 149.97694 * 1 2 3 28 28 H 1.07990 * 119.97047 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.02684 * 180.02562 * 4 3 2 30 30 H 0.96697 * 114.00305 * 270.20809 * 6 5 4 31 31 H 1.09006 * 109.47296 * 180.02562 * 10 8 7 32 32 H 1.09005 * 109.47302 * 299.99953 * 10 8 7 33 33 H 1.08998 * 109.47299 * 59.99845 * 10 8 7 34 34 H 1.00900 * 111.00022 * 32.76167 * 11 8 7 35 35 H 1.09003 * 109.47013 * 294.17290 * 12 11 8 36 36 H 1.08998 * 109.47327 * 54.17549 * 12 11 8 37 37 H 0.96998 * 119.99518 * 185.13720 * 17 16 14 38 38 H 1.09007 * 117.49752 * 359.97438 * 22 13 12 39 39 H 1.08999 * 117.50326 * 145.02016 * 22 13 12 40 40 H 1.09005 * 117.49982 * 252.50701 * 23 22 13 41 41 H 1.09005 * 117.52001 * 107.48496 * 23 22 13 42 42 H 1.08001 * 119.96573 * 180.25347 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 0.0038 6 8 5.6324 -0.0001 0.0090 7 6 3.5787 -1.2007 -0.0015 8 6 4.3303 -2.5069 -0.0015 9 1 5.2184 -2.4150 -0.6266 10 6 4.7471 -2.8555 1.4287 11 7 3.4656 -3.5693 -0.5322 12 6 4.2644 -4.6824 -1.0622 13 6 3.3354 -5.8273 -1.4713 14 6 2.8470 -6.7019 -0.3454 15 1 1.8458 -7.1060 -0.3709 16 6 3.6784 -6.9863 0.7171 17 7 4.9818 -6.8774 0.5796 18 14 2.9535 -7.5259 2.3519 19 1 2.8295 -9.0055 2.3741 20 1 3.8432 -7.0870 3.4569 21 1 1.6114 -6.9141 2.5243 22 6 3.5891 -6.4936 -2.8250 23 6 2.3780 -5.5775 -2.6382 24 6 2.1970 -1.1979 -0.0009 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6559 2.1327 0.0004 29 1 4.1171 2.1370 -0.0001 30 1 6.0291 0.0018 -0.8729 31 1 5.2911 -3.8001 1.4287 32 1 5.3886 -2.0671 1.8226 33 1 3.8589 -2.9473 2.0539 34 1 2.8383 -3.2077 -1.2349 35 1 4.8280 -4.3436 -1.9315 36 1 4.9552 -5.0316 -0.2948 37 1 5.5699 -7.1483 1.3019 38 1 4.4176 -6.1160 -3.4244 39 1 3.4029 -7.5648 -2.9015 40 1 1.3949 -6.0461 -2.5918 41 1 2.4095 -4.5975 -3.1143 42 1 1.6557 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797586960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -12.923776 kcal Electronic energy + Delta-G solvation = -21672.727500 eV Core-core repulsion = 18617.693314 eV Total energy + Delta-G solvation = -3055.034186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08425 -38.91849 -37.81633 -36.72386 -34.14909 -32.67937 -32.00988 -30.16176 -27.69360 -27.11937 -26.23784 -24.30176 -22.95454 -22.42899 -20.96206 -20.79201 -19.31503 -18.18942 -17.21766 -16.78382 -16.58948 -16.30910 -15.74163 -15.38100 -15.04614 -14.94764 -14.70453 -14.50979 -14.30057 -13.63952 -13.44033 -13.30075 -13.19878 -12.91217 -12.79342 -12.74471 -12.46980 -12.40329 -12.32364 -12.26325 -12.05409 -11.80575 -11.33667 -11.11924 -10.93939 -10.53579 -9.89422 -9.74342 -9.28860 -9.06757 -8.06701 -6.03484 0.30614 0.42347 1.39545 1.45705 1.55046 2.45752 2.69287 3.01898 3.30594 3.37041 3.72013 3.77699 4.03915 4.05703 4.26017 4.36143 4.47313 4.49376 4.56598 4.60099 4.73413 4.75409 4.81483 4.87437 4.93213 4.95196 4.98014 5.02632 5.14171 5.18105 5.25893 5.30538 5.33845 5.41501 5.55747 5.58775 5.68078 5.70760 5.99667 6.09942 6.42783 6.45930 6.79386 6.85390 6.91039 7.52754 8.96387 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.005362 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.656261 B = 5221.165547 C = 5309.044315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.144 4.144 5 C 0.091 3.909 6 O -0.506 6.506 7 C -0.117 4.117 8 C 0.140 3.860 9 H 0.038 0.962 10 C -0.118 4.118 11 N -0.670 5.670 12 C 0.100 3.900 13 C 0.037 3.963 14 C -0.497 4.497 15 H 0.045 0.955 16 C 0.045 3.955 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.209 4.209 23 C -0.186 4.186 24 C -0.107 4.107 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.402 0.598 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.332 0.668 35 H -0.010 1.010 36 H 0.096 0.904 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 17.396 -2.391 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.046 3.954 6 O -0.318 6.318 7 C -0.118 4.118 8 C 0.030 3.970 9 H 0.056 0.944 10 C -0.176 4.176 11 N -0.302 5.302 12 C -0.028 4.028 13 C 0.036 3.964 14 C -0.534 4.534 15 H 0.063 0.937 16 C -0.156 4.156 17 N -0.531 5.531 18 Si 0.761 3.239 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.224 4.224 24 C -0.125 4.125 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.165 0.835 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.151 0.849 35 H 0.008 0.992 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.759 17.127 -1.041 17.566 hybrid contribution 0.455 -0.578 -0.540 0.912 sum -3.305 16.549 -1.581 16.949 Atomic orbital electron populations 1.20820 0.89355 1.03663 1.02976 1.20249 0.97605 0.92544 0.99555 1.21225 0.93383 0.98389 0.99545 1.21575 0.95032 0.97507 1.02108 1.18421 0.83165 0.91849 1.01962 1.84790 1.15777 1.96418 1.34835 1.20335 0.94678 0.94084 1.02668 1.20058 0.93290 0.87506 0.96162 0.94408 1.21576 1.00270 1.00166 0.95594 1.60409 1.20517 1.08499 1.40776 1.21529 0.95002 0.89143 0.97159 1.18982 0.95891 0.94858 0.86652 1.20551 0.98647 1.30220 1.04023 0.93660 1.25353 0.94720 0.95026 1.00515 1.69959 1.03042 1.47034 1.33092 0.85935 0.78859 0.77983 0.81121 1.20490 1.21055 1.19825 1.22974 0.99191 0.97194 1.05400 1.22781 0.93980 0.99353 1.06264 1.21019 0.92978 0.98846 0.99643 0.90642 0.89581 0.91621 0.82862 0.83488 0.74030 0.94289 0.91964 0.93690 0.84921 0.99150 0.88612 0.93004 0.90987 0.91492 0.90634 0.89670 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.01 71.24 0.71 -1.26 16 2 C -0.10 -2.31 5.88 -19.85 -0.12 -2.43 16 3 C -0.11 -2.15 9.69 22.25 0.22 -1.93 16 4 C -0.14 -3.13 9.99 22.36 0.22 -2.90 16 5 C 0.09 2.44 6.68 22.51 0.15 2.59 16 6 O -0.51 -12.66 12.69 -92.45 -1.17 -13.83 16 7 C -0.12 -3.62 4.97 -19.77 -0.10 -3.72 16 8 C 0.14 5.06 2.51 44.17 0.11 5.17 16 9 H 0.04 1.38 7.52 -2.39 -0.02 1.36 16 10 C -0.12 -4.59 9.37 71.98 0.67 -3.92 16 11 N -0.67 -27.34 5.51 -495.45 -2.73 -30.07 16 12 C 0.10 4.70 5.14 86.30 0.44 5.14 16 13 C 0.04 1.83 1.94 -52.93 -0.10 1.72 16 14 C -0.50 -27.46 8.98 25.60 0.23 -27.23 16 15 H 0.05 2.53 7.90 -2.92 -0.02 2.51 16 16 C 0.04 2.46 5.04 84.66 0.43 2.89 16 17 N -0.89 -50.23 11.12 21.45 0.24 -50.00 16 18 Si 0.93 44.22 29.59 68.60 2.03 46.25 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 22 C -0.21 -9.57 9.88 30.59 0.30 -9.27 16 23 C -0.19 -7.87 9.62 30.59 0.29 -7.58 16 24 C -0.11 -3.13 8.53 22.25 0.19 -2.94 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 27 H 0.06 1.21 8.08 -2.39 -0.02 1.20 16 28 H 0.15 2.05 8.06 -2.92 -0.02 2.02 16 29 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.40 6.58 9.06 -74.06 -0.67 5.91 16 31 H 0.04 1.70 7.27 -2.38 -0.02 1.68 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.33 12.52 6.89 -89.69 -0.62 11.91 16 35 H -0.01 -0.43 7.95 -2.39 -0.02 -0.45 16 36 H 0.10 5.10 4.48 -2.39 -0.01 5.09 16 37 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 38 H 0.07 3.08 8.09 -2.38 -0.02 3.06 16 39 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 41 H 0.08 3.17 8.07 -2.38 -0.02 3.15 16 42 H 0.13 4.03 6.87 -2.91 -0.02 4.01 16 Total: -1.00 -62.29 343.87 1.75 -60.54 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.27 Total: 32.76 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.66 Total: -45.66 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.49 Total: -80.07 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.17 Total: -13.83 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.29 1.75 -60.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.614 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds