Wall clock time and date at job start Mon Mar 30 2020 02:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38280 * 119.94595 * 2 1 4 4 C 1.38129 * 120.06125 * 179.97438 * 3 2 1 5 5 C 1.38756 * 119.93870 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05132 * 180.02562 * 5 4 3 7 7 C 1.38703 * 119.89194 * 359.97438 * 5 4 3 8 8 C 1.50702 * 120.03024 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47296 * 38.70134 * 8 7 5 10 10 C 1.53004 * 109.46711 * 278.70116 * 8 7 5 11 11 N 1.46898 * 109.47078 * 158.70395 * 8 7 5 12 12 C 1.46904 * 110.99612 * 209.28879 * 11 8 7 13 13 C 1.53005 * 109.46926 * 184.86435 * 12 11 8 14 14 C 1.50699 * 115.55930 * 90.48530 * 13 12 11 15 15 H 1.08001 * 119.99823 * 219.79753 * 14 13 12 16 16 C 1.37872 * 120.00263 * 39.80060 * 14 13 12 17 17 N 1.31514 * 120.00061 * 11.50578 * 16 14 13 18 18 Si 1.86799 * 120.00077 * 191.50891 * 16 14 13 19 19 H 1.48502 * 109.47426 * 59.99685 * 18 16 14 20 20 H 1.48501 * 109.47286 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47269 * 299.99829 * 18 16 14 22 22 C 1.52993 * 117.49870 * 304.79387 * 13 12 11 23 23 C 1.52997 * 60.03217 * 252.49976 * 22 13 12 24 24 C 1.38167 * 119.94154 * 0.25177 * 7 5 4 25 25 H 1.09000 * 109.47080 * 90.00398 * 1 2 3 26 26 H 1.09000 * 109.46772 * 209.99793 * 1 2 3 27 27 H 1.08993 * 109.47210 * 329.99815 * 1 2 3 28 28 H 1.08001 * 119.97044 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.02945 * 179.97438 * 4 3 2 30 30 H 0.96703 * 113.99761 * 269.97533 * 6 5 4 31 31 H 1.08999 * 109.47019 * 60.00083 * 10 8 7 32 32 H 1.09005 * 109.46692 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46943 * 299.99600 * 10 8 7 34 34 H 1.00900 * 111.00553 * 85.33716 * 11 8 7 35 35 H 1.08997 * 109.47608 * 64.86451 * 12 11 8 36 36 H 1.09002 * 109.46931 * 304.86315 * 12 11 8 37 37 H 0.97007 * 120.00123 * 174.99614 * 17 16 14 38 38 H 1.08999 * 117.50264 * 0.02562 * 22 13 12 39 39 H 1.09006 * 117.50118 * 144.99991 * 22 13 12 40 40 H 1.09003 * 117.49629 * 107.50359 * 23 22 13 41 41 H 1.09005 * 117.50213 * 252.51923 * 23 22 13 42 42 H 1.08007 * 119.97411 * 179.74853 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0000 0.0027 7 6 3.5788 -1.2006 0.0027 8 6 4.3304 -2.5068 0.0033 9 1 5.2070 -2.4214 0.6454 10 6 4.7733 -2.8409 -1.4226 11 7 3.4563 -3.5744 0.5073 12 6 4.2390 -4.6274 1.1683 13 6 3.3113 -5.7755 1.5712 14 6 3.1407 -6.8647 0.5438 15 1 2.1697 -7.3102 0.3853 16 6 4.2242 -7.2925 -0.1937 17 7 5.4391 -6.9215 0.1466 18 14 3.9664 -8.3991 -1.6764 19 1 3.1082 -7.7044 -2.6695 20 1 5.2800 -8.7146 -2.2930 21 1 3.3060 -9.6576 -1.2461 22 6 2.1035 -5.4340 2.4460 23 6 3.2934 -6.1858 3.0458 24 6 2.1971 -1.1979 -0.0026 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6559 2.1327 -0.0004 29 1 4.1171 2.1371 0.0001 30 1 6.0265 -0.0007 -0.8805 31 1 5.4218 -2.0487 -1.7967 32 1 5.3173 -3.7855 -1.4221 33 1 3.8967 -2.9264 -2.0647 34 1 2.8886 -3.9572 -0.2338 35 1 4.7192 -4.2192 2.0575 36 1 5.0002 -4.9990 0.4824 37 1 6.2062 -7.2798 -0.3269 38 1 1.9694 -4.3913 2.7342 39 1 1.1852 -5.9969 2.2782 40 1 3.9424 -5.6378 3.7289 41 1 3.1581 -7.2434 3.2723 42 1 1.6557 -2.1324 -0.0059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797586961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:48 Heat of formation + Delta-G solvation = -0.428580 kcal Electronic energy + Delta-G solvation = -21585.436770 eV Core-core repulsion = 18530.944417 eV Total energy + Delta-G solvation = -3054.492353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89316 -37.16086 -36.74571 -35.22165 -32.18325 -31.61015 -30.70623 -28.69299 -26.15411 -25.69294 -24.31813 -23.19435 -21.41869 -20.96333 -19.85813 -19.00266 -18.06588 -16.29671 -15.82711 -15.57353 -14.82255 -14.75801 -14.26004 -13.83611 -13.75732 -13.60702 -13.37809 -13.25901 -12.71914 -12.51477 -12.12617 -11.85912 -11.74368 -11.45744 -11.42600 -11.23712 -11.16477 -10.93316 -10.77737 -10.61196 -10.41716 -10.15793 -10.09960 -9.21090 -8.94521 -8.64416 -8.55324 -8.22420 -8.11815 -7.36681 -6.03593 -4.10822 1.40661 1.58141 3.24038 3.30070 3.33004 3.78964 4.33133 4.39729 4.79000 4.96608 5.03332 5.04619 5.22455 5.43778 5.54692 5.64853 5.66912 5.68156 5.72235 5.82659 5.91351 6.04767 6.16197 6.21929 6.26620 6.33150 6.49253 6.53767 6.60355 6.68168 6.77885 6.82533 6.88359 7.02236 7.05700 7.12574 7.20003 7.48296 7.61365 7.80743 7.99239 8.12216 8.33095 8.49547 8.87889 9.47851 10.93830 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.005103 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.669200 B = 5485.908002 C = 5862.910480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.119 4.119 4 C -0.147 4.147 5 C 0.093 3.907 6 O -0.496 6.496 7 C -0.077 4.077 8 C 0.124 3.876 9 H 0.085 0.915 10 C -0.170 4.170 11 N -0.681 5.681 12 C 0.086 3.914 13 C 0.053 3.947 14 C -0.487 4.487 15 H 0.059 0.941 16 C 0.068 3.932 17 N -0.878 5.878 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.194 4.194 23 C -0.202 4.202 24 C -0.078 4.078 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.383 0.617 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.340 0.660 35 H 0.033 0.967 36 H 0.092 0.908 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 14.079 -3.680 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.137 4.137 4 C -0.166 4.166 5 C 0.048 3.952 6 O -0.306 6.306 7 C -0.078 4.078 8 C 0.013 3.987 9 H 0.103 0.897 10 C -0.228 4.228 11 N -0.311 5.311 12 C -0.042 4.042 13 C 0.052 3.948 14 C -0.524 4.524 15 H 0.077 0.923 16 C -0.134 4.134 17 N -0.516 5.516 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.232 4.232 23 C -0.241 4.241 24 C -0.097 4.097 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.238 0.762 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.052 0.948 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.657 14.406 -2.572 15.084 hybrid contribution 0.488 -1.049 -1.854 2.186 sum -3.169 13.357 -4.427 14.424 Atomic orbital electron populations 1.20752 0.91370 1.02686 1.02001 1.19964 0.96087 0.93167 1.00863 1.20784 0.93450 0.97443 1.02019 1.21249 0.94520 0.97314 1.03497 1.18313 0.82666 0.91843 1.02386 1.84819 1.16268 1.96474 1.33013 1.20378 0.94259 0.94404 0.98789 1.20231 0.94696 0.89064 0.94683 0.89710 1.22386 1.01346 1.01899 0.97204 1.60655 1.23964 1.13323 1.33127 1.21778 0.96145 0.88198 0.98090 1.18929 0.93261 0.94300 0.88326 1.20614 0.95022 1.18733 1.18038 0.92318 1.24973 0.95131 0.96072 0.97200 1.69827 0.97692 1.43096 1.40981 0.86704 0.77359 0.81049 0.83232 1.20135 1.21277 1.20226 1.22709 0.92873 0.98559 1.09056 1.22951 1.01879 0.98474 1.00766 1.20928 0.93233 0.97855 0.97651 0.91517 0.91260 0.91979 0.86372 0.86077 0.76206 0.93465 0.91297 0.92740 0.84154 0.94813 0.89057 0.92800 0.90748 0.91384 0.91992 0.90850 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.10 -1.32 5.88 -104.60 -0.62 -1.93 16 3 C -0.12 -1.45 9.69 -39.61 -0.38 -1.84 16 4 C -0.15 -1.90 9.99 -39.43 -0.39 -2.29 16 5 C 0.09 1.35 6.68 -39.22 -0.26 1.09 16 6 O -0.50 -6.73 12.71 -19.43 -0.25 -6.98 16 7 C -0.08 -1.22 5.09 -104.48 -0.53 -1.75 16 8 C 0.12 2.16 2.49 -68.86 -0.17 1.98 16 9 H 0.08 1.61 7.46 -51.93 -0.39 1.23 16 10 C -0.17 -2.70 9.15 37.16 0.34 -2.36 16 11 N -0.68 -13.38 4.87 -107.95 -0.53 -13.91 16 12 C 0.09 1.98 5.22 -3.82 -0.02 1.96 16 13 C 0.05 1.29 1.87 -155.63 -0.29 1.00 16 14 C -0.49 -12.86 9.01 -34.44 -0.31 -13.17 16 15 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 16 C 0.07 1.79 5.16 -17.82 -0.09 1.70 16 17 N -0.88 -23.66 10.89 55.43 0.60 -23.06 16 18 Si 0.89 20.34 29.56 -169.99 -5.02 15.32 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.19 -4.32 9.73 -26.74 -0.26 -4.58 16 23 C -0.20 -4.75 9.88 -26.70 -0.26 -5.02 16 24 C -0.08 -1.19 8.98 -39.60 -0.36 -1.55 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.38 3.50 8.78 45.56 0.40 3.90 16 31 H 0.05 0.63 7.85 -51.93 -0.41 0.22 16 32 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 33 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.34 6.84 8.04 -39.29 -0.32 6.52 16 35 H 0.03 0.80 7.88 -51.93 -0.41 0.39 16 36 H 0.09 2.31 4.79 -51.93 -0.25 2.07 16 37 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 41 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.14 2.13 6.98 -52.48 -0.37 1.76 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -28.06 344.82 -9.14 -37.21 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.90 Total: 13.79 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -3.25 Total: -27.56 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.08 Total: -36.96 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.25 Total: -6.98 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.06 -9.14 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.778 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds