Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38280 * 119.94595 * 2 1 4 4 C 1.38129 * 120.06125 * 179.97438 * 3 2 1 5 5 C 1.38756 * 119.93870 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05132 * 180.02562 * 5 4 3 7 7 C 1.38703 * 119.89194 * 359.97438 * 5 4 3 8 8 C 1.50702 * 120.03024 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47296 * 38.70134 * 8 7 5 10 10 C 1.53004 * 109.46711 * 278.70116 * 8 7 5 11 11 N 1.46898 * 109.47078 * 158.70395 * 8 7 5 12 12 C 1.46904 * 110.99612 * 209.28879 * 11 8 7 13 13 C 1.53005 * 109.46926 * 184.86435 * 12 11 8 14 14 C 1.50699 * 115.55930 * 90.48530 * 13 12 11 15 15 H 1.08001 * 119.99823 * 219.79753 * 14 13 12 16 16 C 1.37872 * 120.00263 * 39.80060 * 14 13 12 17 17 N 1.31514 * 120.00061 * 11.50578 * 16 14 13 18 18 Si 1.86799 * 120.00077 * 191.50891 * 16 14 13 19 19 H 1.48502 * 109.47426 * 59.99685 * 18 16 14 20 20 H 1.48501 * 109.47286 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47269 * 299.99829 * 18 16 14 22 22 C 1.52993 * 117.49870 * 304.79387 * 13 12 11 23 23 C 1.52997 * 60.03217 * 252.49976 * 22 13 12 24 24 C 1.38167 * 119.94154 * 0.25177 * 7 5 4 25 25 H 1.09000 * 109.47080 * 90.00398 * 1 2 3 26 26 H 1.09000 * 109.46772 * 209.99793 * 1 2 3 27 27 H 1.08993 * 109.47210 * 329.99815 * 1 2 3 28 28 H 1.08001 * 119.97044 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.02945 * 179.97438 * 4 3 2 30 30 H 0.96703 * 113.99761 * 269.97533 * 6 5 4 31 31 H 1.08999 * 109.47019 * 60.00083 * 10 8 7 32 32 H 1.09005 * 109.46692 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46943 * 299.99600 * 10 8 7 34 34 H 1.00900 * 111.00553 * 85.33716 * 11 8 7 35 35 H 1.08997 * 109.47608 * 64.86451 * 12 11 8 36 36 H 1.09002 * 109.46931 * 304.86315 * 12 11 8 37 37 H 0.97007 * 120.00123 * 174.99614 * 17 16 14 38 38 H 1.08999 * 117.50264 * 0.02562 * 22 13 12 39 39 H 1.09006 * 117.50118 * 144.99991 * 22 13 12 40 40 H 1.09003 * 117.49629 * 107.50359 * 23 22 13 41 41 H 1.09005 * 117.50213 * 252.51923 * 23 22 13 42 42 H 1.08007 * 119.97411 * 179.74853 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0000 0.0027 7 6 3.5788 -1.2006 0.0027 8 6 4.3304 -2.5068 0.0033 9 1 5.2070 -2.4214 0.6454 10 6 4.7733 -2.8409 -1.4226 11 7 3.4563 -3.5744 0.5073 12 6 4.2390 -4.6274 1.1683 13 6 3.3113 -5.7755 1.5712 14 6 3.1407 -6.8647 0.5438 15 1 2.1697 -7.3102 0.3853 16 6 4.2242 -7.2925 -0.1937 17 7 5.4391 -6.9215 0.1466 18 14 3.9664 -8.3991 -1.6764 19 1 3.1082 -7.7044 -2.6695 20 1 5.2800 -8.7146 -2.2930 21 1 3.3060 -9.6576 -1.2461 22 6 2.1035 -5.4340 2.4460 23 6 3.2934 -6.1858 3.0458 24 6 2.1971 -1.1979 -0.0026 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6559 2.1327 -0.0004 29 1 4.1171 2.1371 0.0001 30 1 6.0265 -0.0007 -0.8805 31 1 5.4218 -2.0487 -1.7967 32 1 5.3173 -3.7855 -1.4221 33 1 3.8967 -2.9264 -2.0647 34 1 2.8886 -3.9572 -0.2338 35 1 4.7192 -4.2192 2.0575 36 1 5.0002 -4.9990 0.4824 37 1 6.2062 -7.2798 -0.3269 38 1 1.9694 -4.3913 2.7342 39 1 1.1852 -5.9969 2.2782 40 1 3.9424 -5.6378 3.7289 41 1 3.1581 -7.2434 3.2723 42 1 1.6557 -2.1324 -0.0059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797586961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -16.404175 kcal Electronic energy + Delta-G solvation = -21586.129524 eV Core-core repulsion = 18530.944417 eV Total energy + Delta-G solvation = -3055.185107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98793 -38.90125 -37.76639 -36.74905 -34.19869 -32.62928 -31.98321 -30.00927 -27.69683 -27.09611 -25.98196 -24.43710 -22.91063 -22.43351 -21.19563 -20.81779 -19.15949 -18.12279 -16.96870 -16.80006 -16.70847 -16.03268 -15.69834 -15.52416 -15.05331 -14.82058 -14.58519 -14.39231 -14.22684 -13.75026 -13.47407 -13.29863 -13.18577 -12.96659 -12.86033 -12.76150 -12.60579 -12.38849 -12.28370 -12.18594 -12.00234 -11.88815 -11.35735 -10.98494 -10.90139 -10.55521 -10.07447 -9.63939 -9.23602 -9.03075 -8.02609 -6.17633 0.37525 0.52271 1.41379 1.43618 1.50496 2.41092 2.76011 3.00129 3.34111 3.43113 3.79587 3.88523 4.09154 4.10224 4.27794 4.33306 4.40402 4.52223 4.58515 4.67497 4.75852 4.78669 4.82816 4.91118 4.97424 4.98280 5.02598 5.09686 5.16992 5.22322 5.29039 5.30729 5.32692 5.48125 5.60352 5.62080 5.70681 5.77703 6.05188 6.07114 6.40367 6.50393 6.64122 6.89058 6.90210 7.43410 8.92096 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.005103 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.669200 B = 5485.908002 C = 5862.910480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.147 4.147 5 C 0.084 3.916 6 O -0.508 6.508 7 C -0.098 4.098 8 C 0.130 3.870 9 H 0.062 0.938 10 C -0.160 4.160 11 N -0.673 5.673 12 C 0.101 3.899 13 C 0.028 3.972 14 C -0.505 4.505 15 H 0.052 0.948 16 C 0.030 3.970 17 N -0.900 5.900 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.170 4.170 23 C -0.209 4.209 24 C -0.095 4.095 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.401 0.599 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.337 0.663 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.261 0.739 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 15.962 -4.536 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.131 4.131 4 C -0.165 4.165 5 C 0.039 3.961 6 O -0.321 6.321 7 C -0.099 4.099 8 C 0.019 3.981 9 H 0.080 0.920 10 C -0.219 4.219 11 N -0.303 5.303 12 C -0.028 4.028 13 C 0.028 3.972 14 C -0.542 4.542 15 H 0.070 0.930 16 C -0.170 4.170 17 N -0.538 5.538 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.207 4.207 23 C -0.247 4.247 24 C -0.114 4.114 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.168 0.832 29 H 0.162 0.838 30 H 0.259 0.741 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.782 16.299 -3.436 17.330 hybrid contribution 0.845 -1.567 -1.560 2.367 sum -3.937 14.732 -4.996 16.047 Atomic orbital electron populations 1.20796 0.89464 1.03364 1.03024 1.20264 0.97560 0.92691 0.99911 1.21173 0.93373 0.98346 1.00187 1.21533 0.95038 0.97456 1.02509 1.18440 0.83017 0.92010 1.02621 1.84771 1.16044 1.96458 1.34785 1.20246 0.94652 0.93815 1.01210 1.20135 0.93832 0.89358 0.94759 0.91963 1.22268 1.01631 1.01349 0.96632 1.60612 1.23904 1.12493 1.33264 1.21440 0.95644 0.88616 0.97084 1.19061 0.95032 0.94678 0.88458 1.20803 0.94841 1.19482 1.19090 0.93012 1.25590 0.94805 0.97371 0.99255 1.69959 0.98206 1.43851 1.41793 0.85776 0.77242 0.79343 0.80282 1.19433 1.21089 1.20106 1.22646 0.92262 0.98884 1.06930 1.22952 1.02969 0.98382 1.00412 1.20930 0.93039 0.98444 0.98945 0.90245 0.91874 0.90032 0.83186 0.83809 0.74143 0.90710 0.94083 0.92325 0.84485 0.96261 0.91377 0.92907 0.89784 0.90784 0.91491 0.91538 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.10 -2.50 5.88 -19.85 -0.12 -2.62 16 3 C -0.11 -2.38 9.69 22.25 0.22 -2.17 16 4 C -0.15 -3.38 9.99 22.37 0.22 -3.15 16 5 C 0.08 2.33 6.68 22.51 0.15 2.48 16 6 O -0.51 -13.21 12.71 -92.45 -1.18 -14.39 16 7 C -0.10 -3.07 5.09 -19.77 -0.10 -3.17 16 8 C 0.13 4.60 2.49 44.17 0.11 4.71 16 9 H 0.06 2.46 7.46 -2.39 -0.02 2.45 16 10 C -0.16 -5.15 9.15 71.98 0.66 -4.49 16 11 N -0.67 -27.14 4.87 -495.43 -2.41 -29.56 16 12 C 0.10 4.81 5.22 86.30 0.45 5.26 16 13 C 0.03 1.41 1.87 -52.91 -0.10 1.31 16 14 C -0.50 -27.01 9.01 25.60 0.23 -26.78 16 15 H 0.05 2.77 7.84 -2.91 -0.02 2.75 16 16 C 0.03 1.58 5.16 84.65 0.44 2.02 16 17 N -0.90 -49.50 10.89 21.45 0.23 -49.26 16 18 Si 0.95 41.98 29.56 68.60 2.03 44.00 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.17 -7.50 9.73 30.59 0.30 -7.21 16 23 C -0.21 -9.90 9.88 30.62 0.30 -9.60 16 24 C -0.10 -2.82 8.98 22.26 0.20 -2.62 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.40 6.73 8.78 -74.06 -0.65 6.08 16 31 H 0.07 1.94 7.85 -2.39 -0.02 1.92 16 32 H 0.04 1.53 7.69 -2.38 -0.02 1.51 16 33 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 34 H 0.34 13.91 8.04 -89.69 -0.72 13.19 16 35 H 0.02 0.94 7.88 -2.39 -0.02 0.92 16 36 H 0.07 3.60 4.79 -2.39 -0.01 3.59 16 37 H 0.26 13.80 8.32 -92.70 -0.77 13.03 16 38 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 40 H 0.07 3.06 8.03 -2.39 -0.02 3.04 16 41 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 42 H 0.12 3.88 6.98 -2.91 -0.02 3.86 16 Total: -1.00 -60.23 344.82 1.99 -58.23 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.35 Total: 38.29 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 3.67 Total: -47.32 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.18 Total: -78.82 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.18 Total: -14.39 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -60.23 1.99 -58.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.827 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds