Wall clock time and date at job start Mon Mar 30 2020 02:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.92558 * 2 1 4 4 C 1.38119 * 120.06421 * 180.27706 * 3 2 1 5 5 C 1.38867 * 119.93117 * 359.46231 * 4 3 2 6 6 N 1.39921 * 120.07359 * 180.29583 * 5 4 3 7 7 C 1.46502 * 120.00242 * 292.84221 * 6 5 4 8 8 C 1.34783 * 119.99575 * 112.83253 * 6 5 4 9 9 O 1.21281 * 120.00115 * 5.28262 * 8 6 5 10 10 C 1.50700 * 119.99763 * 185.28003 * 8 6 5 11 11 C 1.52997 * 109.46987 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47230 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46987 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00043 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99568 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47038 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47212 * 120.00296 * 18 16 14 21 21 H 1.48497 * 109.47324 * 240.00314 * 18 16 14 22 22 C 1.38872 * 119.85655 * 0.28272 * 5 4 3 23 23 C 1.38110 * 119.93280 * 359.97438 * 22 5 4 24 24 H 1.08994 * 109.47302 * 270.23487 * 1 2 3 25 25 H 1.09005 * 109.46805 * 30.23595 * 1 2 3 26 26 H 1.08998 * 109.46903 * 150.23106 * 1 2 3 27 27 H 1.07996 * 119.97327 * 0.04277 * 3 2 1 28 28 H 1.08001 * 120.03418 * 179.74220 * 4 3 2 29 29 H 1.08996 * 109.47354 * 89.99920 * 7 6 5 30 30 H 1.09006 * 109.46863 * 209.99815 * 7 6 5 31 31 H 1.08998 * 109.46903 * 329.99347 * 7 6 5 32 32 H 1.08998 * 109.47392 * 300.00433 * 10 8 6 33 33 H 1.09006 * 109.46989 * 60.00289 * 10 8 6 34 34 H 1.09006 * 109.47069 * 299.99974 * 11 10 8 35 35 H 1.08992 * 109.47178 * 60.00288 * 11 10 8 36 36 H 1.09006 * 109.46735 * 299.99763 * 12 11 10 37 37 H 1.08998 * 109.47310 * 59.99430 * 12 11 10 38 38 H 1.08998 * 109.47179 * 299.99869 * 13 12 11 39 39 H 1.09000 * 109.46986 * 60.00118 * 13 12 11 40 40 H 0.97000 * 119.99373 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.03450 * 180.02562 * 22 5 4 42 42 H 1.08006 * 119.96715 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2018 -0.0058 5 6 4.2739 0.0001 -0.0003 6 7 5.6731 0.0000 0.0001 7 6 6.4060 0.4874 -1.1710 8 6 6.3466 -0.4482 1.0781 9 8 5.7437 -0.9400 2.0085 10 6 7.8488 -0.3385 1.1273 11 6 8.3594 -0.9165 2.4487 12 6 9.8844 -0.8045 2.4989 13 6 10.3951 -1.3831 3.8200 14 6 11.8973 -1.2734 3.8692 15 1 12.4341 -0.8344 3.0412 16 6 12.5864 -1.7324 4.9718 17 7 11.9326 -2.2665 5.9802 18 14 14.4483 -1.5957 5.0330 19 1 14.9395 -0.9616 3.7833 20 1 14.8456 -0.7653 6.1982 21 1 15.0401 -2.9512 5.1665 22 6 3.5780 -1.2017 0.0050 23 6 2.1969 -1.1984 0.0054 24 1 -0.3633 0.0042 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8920 -0.5102 27 1 1.6553 2.1328 0.0007 28 1 4.1163 2.1381 -0.0100 29 1 6.5877 1.5570 -1.0668 30 1 7.3585 -0.0372 -1.2477 31 1 5.8173 0.3047 -2.0699 32 1 8.2812 -0.8956 0.2962 33 1 8.1392 0.7095 1.0524 34 1 7.9269 -0.3597 3.2800 35 1 8.0691 -1.9644 2.5231 36 1 10.3172 -1.3611 1.6675 37 1 10.1745 0.2435 2.4246 38 1 9.9624 -0.8270 4.6516 39 1 10.1051 -2.4313 3.8938 40 1 12.4175 -2.5897 6.7557 41 1 4.1163 -2.1381 0.0097 42 1 1.6552 -2.1327 0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807578654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:43 Heat of formation + Delta-G solvation = -32.940500 kcal Electronic energy + Delta-G solvation = -20122.836657 eV Core-core repulsion = 17066.934481 eV Total energy + Delta-G solvation = -3055.902176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62606 -38.84233 -35.85855 -34.89984 -32.77275 -32.12794 -31.17459 -29.72872 -27.60115 -26.53161 -25.23653 -22.94815 -22.73417 -21.33174 -20.01304 -19.34344 -17.40521 -16.67678 -16.28908 -16.13827 -15.61453 -15.21610 -14.58673 -14.36448 -14.18057 -13.98298 -13.65994 -13.48490 -13.19892 -12.78752 -12.59093 -12.55749 -12.18970 -12.13289 -11.76163 -11.64386 -11.56626 -11.32104 -10.98813 -10.53014 -10.47698 -10.40038 -9.84122 -9.60486 -9.35463 -9.22126 -9.13848 -8.96721 -8.43996 -8.29829 -5.94349 -3.96746 1.03538 1.20198 2.63336 2.81242 3.33752 3.40879 3.44793 3.49331 4.49468 4.60011 4.63781 4.68873 4.79106 4.85614 5.03969 5.13214 5.19076 5.29083 5.30850 5.34153 5.38260 5.40956 5.43088 5.49633 5.65465 5.81408 5.84077 6.05912 6.13766 6.26851 6.31625 6.36569 6.43095 6.55161 6.84484 6.89358 7.01403 7.17078 7.23270 7.75560 7.91267 8.07232 8.18223 8.48952 9.11221 9.66826 11.17046 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044430 B = 0.002564 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.059401 B =10918.993698 C =11265.886798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.113 4.113 4 C -0.118 4.118 5 C 0.139 3.861 6 N -0.586 5.586 7 C 0.080 3.920 8 C 0.514 3.486 9 O -0.519 6.519 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.100 4.100 23 C -0.111 4.111 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.531 6.896 -17.954 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.131 4.131 4 C -0.138 4.138 5 C 0.048 3.952 6 N -0.318 5.318 7 C -0.062 4.062 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.174 4.174 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.120 4.120 23 C -0.129 4.129 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.775 6.545 -17.267 27.795 hybrid contribution 1.139 0.099 0.067 1.145 sum -19.636 6.644 -17.200 26.936 Atomic orbital electron populations 1.20786 0.91098 1.02681 1.02434 1.19954 0.96182 0.93134 0.99897 1.20872 0.93447 0.97669 1.01127 1.21196 0.94373 0.97209 1.01005 1.17588 0.82832 0.93200 1.01546 1.45586 1.03655 1.65429 1.17147 1.21878 0.97325 0.99874 0.87088 1.21305 0.90913 0.76510 0.80867 1.90727 1.70428 1.42156 1.35967 1.21836 0.89610 1.03718 1.02274 1.21480 0.97399 1.01275 0.94081 1.21644 0.91774 1.00268 1.01025 1.19103 0.95430 0.96172 0.91097 1.21320 0.92353 1.39415 1.02649 0.92694 1.25055 0.98358 0.95455 0.95801 1.69988 1.35319 1.41096 1.07050 0.86551 0.85943 0.77668 0.77913 1.19783 1.21064 1.21059 1.21255 0.94254 0.97571 0.98930 1.20923 0.93524 0.97740 1.00746 0.91092 0.91578 0.91539 0.85762 0.85844 0.92204 0.90019 0.90978 0.88967 0.88922 0.91775 0.91772 0.93456 0.93446 0.96580 0.96580 0.93105 0.85897 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.85 5.88 -104.59 -0.62 -1.46 16 3 C -0.11 -1.05 9.69 -39.61 -0.38 -1.43 16 4 C -0.12 -1.25 9.85 -39.39 -0.39 -1.64 16 5 C 0.14 1.71 4.82 -83.70 -0.40 1.30 16 6 N -0.59 -7.02 2.93 -120.82 -0.35 -7.38 16 7 C 0.08 0.62 10.10 59.85 0.60 1.23 16 8 C 0.51 7.74 7.55 -10.98 -0.08 7.66 16 9 O -0.52 -10.02 15.54 5.56 0.09 -9.94 16 10 C -0.13 -1.84 4.38 -27.88 -0.12 -1.97 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.10 -1.22 9.31 -39.39 -0.37 -1.59 16 23 C -0.11 -1.13 9.69 -39.61 -0.38 -1.52 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.55 6.48 -51.93 -0.34 0.21 16 31 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.09 1.06 7.24 -51.93 -0.38 0.69 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.26 8.10 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -34.72 352.51 -8.83 -43.55 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -7.00 Total: -3.84 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.59 Total: -17.72 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.38 Total: -34.36 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.72 -8.83 -43.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807578654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.610 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds