Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.92558 * 2 1 4 4 C 1.38119 * 120.06421 * 180.27706 * 3 2 1 5 5 C 1.38867 * 119.93117 * 359.46231 * 4 3 2 6 6 N 1.39921 * 120.07359 * 180.29583 * 5 4 3 7 7 C 1.46502 * 120.00242 * 292.84221 * 6 5 4 8 8 C 1.34783 * 119.99575 * 112.83253 * 6 5 4 9 9 O 1.21281 * 120.00115 * 5.28262 * 8 6 5 10 10 C 1.50700 * 119.99763 * 185.28003 * 8 6 5 11 11 C 1.52997 * 109.46987 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47230 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46987 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00043 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99568 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47038 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47212 * 120.00296 * 18 16 14 21 21 H 1.48497 * 109.47324 * 240.00314 * 18 16 14 22 22 C 1.38872 * 119.85655 * 0.28272 * 5 4 3 23 23 C 1.38110 * 119.93280 * 359.97438 * 22 5 4 24 24 H 1.08994 * 109.47302 * 270.23487 * 1 2 3 25 25 H 1.09005 * 109.46805 * 30.23595 * 1 2 3 26 26 H 1.08998 * 109.46903 * 150.23106 * 1 2 3 27 27 H 1.07996 * 119.97327 * 0.04277 * 3 2 1 28 28 H 1.08001 * 120.03418 * 179.74220 * 4 3 2 29 29 H 1.08996 * 109.47354 * 89.99920 * 7 6 5 30 30 H 1.09006 * 109.46863 * 209.99815 * 7 6 5 31 31 H 1.08998 * 109.46903 * 329.99347 * 7 6 5 32 32 H 1.08998 * 109.47392 * 300.00433 * 10 8 6 33 33 H 1.09006 * 109.46989 * 60.00289 * 10 8 6 34 34 H 1.09006 * 109.47069 * 299.99974 * 11 10 8 35 35 H 1.08992 * 109.47178 * 60.00288 * 11 10 8 36 36 H 1.09006 * 109.46735 * 299.99763 * 12 11 10 37 37 H 1.08998 * 109.47310 * 59.99430 * 12 11 10 38 38 H 1.08998 * 109.47179 * 299.99869 * 13 12 11 39 39 H 1.09000 * 109.46986 * 60.00118 * 13 12 11 40 40 H 0.97000 * 119.99373 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.03450 * 180.02562 * 22 5 4 42 42 H 1.08006 * 119.96715 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2018 -0.0058 5 6 4.2739 0.0001 -0.0003 6 7 5.6731 0.0000 0.0001 7 6 6.4060 0.4874 -1.1710 8 6 6.3466 -0.4482 1.0781 9 8 5.7437 -0.9400 2.0085 10 6 7.8488 -0.3385 1.1273 11 6 8.3594 -0.9165 2.4487 12 6 9.8844 -0.8045 2.4989 13 6 10.3951 -1.3831 3.8200 14 6 11.8973 -1.2734 3.8692 15 1 12.4341 -0.8344 3.0412 16 6 12.5864 -1.7324 4.9718 17 7 11.9326 -2.2665 5.9802 18 14 14.4483 -1.5957 5.0330 19 1 14.9395 -0.9616 3.7833 20 1 14.8456 -0.7653 6.1982 21 1 15.0401 -2.9512 5.1665 22 6 3.5780 -1.2017 0.0050 23 6 2.1969 -1.1984 0.0054 24 1 -0.3633 0.0042 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8920 -0.5102 27 1 1.6553 2.1328 0.0007 28 1 4.1163 2.1381 -0.0100 29 1 6.5877 1.5570 -1.0668 30 1 7.3585 -0.0372 -1.2477 31 1 5.8173 0.3047 -2.0699 32 1 8.2812 -0.8956 0.2962 33 1 8.1392 0.7095 1.0524 34 1 7.9269 -0.3597 3.2800 35 1 8.0691 -1.9644 2.5231 36 1 10.3172 -1.3611 1.6675 37 1 10.1745 0.2435 2.4246 38 1 9.9624 -0.8270 4.6516 39 1 10.1051 -2.4313 3.8938 40 1 12.4175 -2.5897 6.7557 41 1 4.1163 -2.1381 0.0097 42 1 1.6552 -2.1327 0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807578654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -52.341566 kcal Electronic energy + Delta-G solvation = -20123.677950 eV Core-core repulsion = 17066.934481 eV Total energy + Delta-G solvation = -3056.743469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59744 -39.76672 -36.90754 -36.55401 -34.65908 -33.06597 -31.95305 -31.37977 -28.36056 -27.82998 -26.54969 -24.32797 -23.71093 -22.45815 -21.68618 -20.34615 -18.50655 -18.27850 -17.67726 -17.29287 -16.52195 -16.39529 -16.30636 -15.47223 -15.36737 -14.66336 -14.53731 -14.45472 -14.41213 -14.16541 -13.69147 -13.59604 -13.44296 -13.20937 -13.05810 -12.84670 -12.80061 -12.46927 -12.30598 -12.17082 -12.15239 -12.04311 -11.39182 -11.35358 -11.15698 -10.84819 -10.56142 -10.20754 -9.93647 -9.27084 -8.19017 -6.31146 0.23276 0.40653 1.40386 1.41474 1.51911 1.54971 1.90853 2.41805 2.71160 3.13779 3.62476 3.89585 3.99149 3.99280 4.03706 4.08750 4.20783 4.42724 4.44923 4.56255 4.61558 4.64759 4.70522 4.77222 4.80497 4.85291 4.85840 4.92551 5.08050 5.12302 5.16559 5.31674 5.33839 5.35675 5.46890 5.56181 5.63243 5.64592 5.77330 5.87703 6.07420 6.22600 6.25110 6.87633 7.11056 7.38489 8.93569 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044430 B = 0.002564 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.059401 B =10918.993698 C =11265.886798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.114 4.114 4 C -0.124 4.124 5 C 0.112 3.888 6 N -0.578 5.578 7 C 0.071 3.929 8 C 0.509 3.491 9 O -0.577 6.577 10 C -0.122 4.122 11 C -0.096 4.096 12 C -0.094 4.094 13 C 0.018 3.982 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.256 1.256 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.138 0.862 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.062 0.938 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.107 0.893 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.246 8.697 -20.295 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.144 4.144 5 C 0.022 3.978 6 N -0.308 5.308 7 C -0.069 4.069 8 C 0.301 3.699 9 O -0.455 6.455 10 C -0.161 4.161 11 C -0.134 4.134 12 C -0.131 4.131 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.795 3.205 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.169 0.831 28 H 0.155 0.845 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.125 0.875 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.497 8.374 -19.674 29.620 hybrid contribution 0.944 -0.464 0.782 1.311 sum -19.552 7.911 -18.892 28.315 Atomic orbital electron populations 1.20843 0.88859 1.04049 1.03067 1.20345 0.97864 0.92673 0.98489 1.21253 0.93165 0.98878 0.99934 1.21402 0.95128 0.97027 1.00793 1.17849 0.83079 0.93919 1.03001 1.45604 1.03906 1.64007 1.17246 1.22209 0.97715 1.01144 0.85863 1.21511 0.91411 0.76058 0.80953 1.90703 1.71454 1.45045 1.38306 1.21716 0.88800 1.05471 1.00157 1.21262 0.95721 1.00077 0.96370 1.21436 0.93156 1.00757 0.97799 1.19068 0.95148 0.94192 0.93550 1.21782 0.93385 1.39376 1.03170 0.91435 1.26125 1.04350 0.94845 0.95292 1.70146 1.37796 1.42108 1.07888 0.85311 0.78693 0.77903 0.78592 1.17977 1.20513 1.20499 1.21317 0.95319 0.97209 1.00538 1.21172 0.92963 0.99125 1.00566 0.90672 0.89904 0.90575 0.83065 0.84457 0.90232 0.88571 0.89693 0.85950 0.86068 0.94047 0.93944 0.91847 0.91895 0.99805 0.99773 0.92873 0.87477 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.09 -1.60 5.88 -19.84 -0.12 -1.72 16 3 C -0.11 -1.91 9.69 22.25 0.22 -1.69 16 4 C -0.12 -2.47 9.85 22.39 0.22 -2.25 16 5 C 0.11 2.72 4.82 38.15 0.18 2.91 16 6 N -0.58 -13.32 2.93 -654.56 -1.92 -15.24 16 7 C 0.07 0.92 10.10 127.77 1.29 2.21 16 8 C 0.51 15.33 7.55 87.66 0.66 15.99 16 9 O -0.58 -23.35 15.54 -3.03 -0.05 -23.40 16 10 C -0.12 -3.15 4.38 29.85 0.13 -3.02 16 11 C -0.10 -3.57 4.50 30.59 0.14 -3.43 16 12 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 13 C 0.02 0.98 4.97 29.85 0.15 1.12 16 14 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 17 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 18 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C -0.12 -3.13 9.31 22.39 0.21 -2.92 16 23 C -0.12 -2.44 9.69 22.25 0.22 -2.22 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.61 8.09 -2.38 -0.02 0.59 16 26 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 27 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 28 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.96 6.48 -2.38 -0.02 0.95 16 31 H 0.08 0.90 8.05 -2.39 -0.02 0.88 16 32 H 0.12 2.45 7.24 -2.39 -0.02 2.43 16 33 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.04 1.69 8.10 -2.38 -0.02 1.68 16 35 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -78.90 352.51 6.18 -72.71 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.97 Total: 8.67 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.86 Total: -30.49 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.63 Total: -74.59 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -78.90 6.18 -72.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807578654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.373 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds