Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 119.99810 * 2 1 4 4 C 1.38215 * 119.99630 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00087 * 359.69972 * 4 3 2 6 6 C 1.38210 * 120.00107 * 0.55419 * 5 4 3 7 7 C 1.50700 * 120.00554 * 179.74337 * 6 5 4 8 8 H 1.08996 * 110.46530 * 197.31446 * 7 6 5 9 9 C 1.54380 * 110.41159 * 74.89585 * 7 6 5 10 10 C 1.54257 * 105.06252 * 217.37149 * 9 7 6 11 11 C 1.54372 * 105.06268 * 0.02562 * 10 9 7 12 12 N 1.48561 * 104.59608 * 23.84805 * 11 10 9 13 13 C 1.46893 * 111.00650 * 200.96005 * 12 11 10 14 14 C 1.53004 * 109.47285 * 285.42576 * 13 12 11 15 15 H 1.09000 * 109.47211 * 59.98987 * 14 13 12 16 16 O 1.42898 * 109.46678 * 299.99467 * 14 13 12 17 17 C 1.50701 * 109.47211 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 C 1.38216 * 120.00052 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46765 * 270.01720 * 1 2 3 27 27 H 1.08992 * 109.47026 * 30.01874 * 1 2 3 28 28 H 1.09002 * 109.47288 * 150.02114 * 1 2 3 29 29 H 1.07992 * 120.00671 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.99650 * 179.97438 * 4 3 2 31 31 H 1.08003 * 120.00219 * 180.29914 * 5 4 3 32 32 H 1.09003 * 110.32408 * 336.27213 * 9 7 6 33 33 H 1.09010 * 110.32014 * 98.37269 * 9 7 6 34 34 H 1.09005 * 110.32256 * 118.90343 * 10 9 7 35 35 H 1.09003 * 110.32325 * 241.00263 * 10 9 7 36 36 H 1.08998 * 110.41365 * 265.07431 * 11 10 9 37 37 H 1.09002 * 110.41579 * 142.63023 * 11 10 9 38 38 H 1.09000 * 109.47823 * 165.41937 * 13 12 11 39 39 H 1.09007 * 109.47029 * 45.41706 * 13 12 11 40 40 H 0.96702 * 114.00549 * 300.00185 * 16 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00006 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 0.0052 6 6 3.5806 -1.1970 -0.0001 7 6 4.3341 -2.5021 0.0003 8 1 3.6815 -3.3189 -0.3080 9 6 4.9240 -2.7828 1.3991 10 6 6.2973 -3.4326 1.1319 11 6 6.4219 -3.4893 -0.4057 12 7 5.5172 -2.4171 -0.8945 13 6 5.1360 -2.6473 -2.2943 14 6 6.3169 -2.3097 -3.2067 15 1 7.1657 -2.9444 -2.9521 16 8 6.6778 -0.9383 -3.0308 17 6 5.9259 -2.5465 -4.6427 18 1 4.9344 -2.9025 -4.8807 19 6 6.8359 -2.3145 -5.6521 20 7 8.0434 -1.8812 -5.3622 21 14 6.3538 -2.6154 -7.4316 22 1 4.9507 -3.0980 -7.4895 23 1 6.4743 -1.3492 -8.1980 24 1 7.2535 -3.6388 -8.0220 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6584 2.1326 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0000 0.0097 32 1 5.0469 -1.8515 1.9520 33 1 4.2802 -3.4678 1.9509 34 1 7.0944 -2.8203 1.5537 35 1 6.3292 -4.4373 1.5535 36 1 6.0961 -4.4606 -0.7780 37 1 7.4488 -3.2890 -0.7116 38 1 4.2871 -2.0127 -2.5488 39 1 4.8606 -3.6934 -2.4285 40 1 5.9686 -0.3150 -3.2395 41 1 8.6837 -1.7184 -6.0724 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = -30.895004 kcal Electronic energy + Delta-G solvation = -21669.337221 eV Core-core repulsion = 18613.523744 eV Total energy + Delta-G solvation = -3055.813476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.72214 -38.03263 -35.44701 -32.72426 -32.06195 -31.56001 -31.40469 -27.74525 -27.54733 -26.61294 -24.44690 -22.35090 -21.81032 -21.19356 -19.80662 -19.32247 -16.93642 -16.44477 -15.64961 -15.17353 -14.90360 -14.55347 -14.16451 -14.09525 -13.91950 -13.71571 -13.30376 -12.86226 -12.83603 -12.36977 -12.28334 -12.20083 -12.09982 -11.72729 -11.33048 -11.04436 -10.97489 -10.89034 -10.80040 -10.69077 -10.55176 -10.38971 -10.22985 -10.00433 -8.96421 -8.56673 -8.53578 -8.30604 -8.07362 -7.74690 -5.96759 -4.14743 1.59805 1.65206 3.28359 3.36571 3.39965 3.96747 4.35538 4.50836 4.88502 4.96995 5.01464 5.06858 5.23372 5.23782 5.31368 5.41450 5.46740 5.53864 5.56828 5.73827 5.80325 5.87655 5.89387 5.95761 6.01936 6.09483 6.13725 6.25348 6.31126 6.35578 6.40922 6.49329 6.60765 6.75273 6.80259 6.87475 6.94877 7.27558 7.40566 7.62766 7.81014 7.92177 8.25279 8.89452 9.50981 9.67586 11.07353 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.005408 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.728424 B = 5175.841845 C = 6130.934151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.060 4.060 7 C 0.094 3.906 8 H 0.051 0.949 9 C -0.112 4.112 10 C -0.123 4.123 11 C 0.035 3.965 12 N -0.487 5.487 13 C 0.022 3.978 14 C 0.242 3.758 15 H 0.052 0.948 16 O -0.553 6.553 17 C -0.573 4.573 18 H 0.053 0.947 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.120 4.120 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.341 0.659 41 H 0.259 0.741 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 1.294 13.825 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.060 4.060 7 C -0.015 4.015 8 H 0.069 0.931 9 C -0.150 4.150 10 C -0.161 4.161 11 C -0.093 4.093 12 N -0.210 5.210 13 C -0.106 4.106 14 C 0.184 3.816 15 H 0.070 0.930 16 O -0.354 6.354 17 C -0.611 4.611 18 H 0.072 0.928 19 C -0.126 4.126 20 N -0.494 5.494 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.139 4.139 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.184 0.816 41 H 0.069 0.931 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.526 1.581 13.942 16.959 hybrid contribution -1.220 -0.850 -1.472 2.092 sum -10.746 0.731 12.470 16.477 Atomic orbital electron populations 1.20740 0.91708 1.02478 1.01786 1.19759 0.95607 0.93190 1.01072 1.20948 0.94415 0.97070 1.02113 1.21165 0.94072 0.98225 1.00497 1.21103 1.00997 0.91078 0.97096 1.19650 0.92653 0.94832 0.98868 1.21562 0.92727 0.93307 0.93882 0.93120 1.22310 0.96194 1.00808 0.95720 1.22303 0.97291 1.00191 0.96328 1.23079 0.99382 0.93213 0.93662 1.65412 1.09785 1.43202 1.02611 1.23246 1.01529 0.98432 0.87415 1.19223 0.90557 0.81484 0.90351 0.93040 1.86547 1.41496 1.16830 1.90546 1.21704 0.99269 1.47888 0.92253 0.92841 1.25005 0.94714 0.93985 0.98849 1.70092 1.04504 1.42642 1.32199 0.86655 0.78648 0.77946 0.85351 1.19796 1.20852 1.20924 1.20853 0.93639 0.97265 1.02100 0.91663 0.91833 0.91842 0.86762 0.86334 0.84823 0.91060 0.91867 0.91158 0.91881 0.94322 0.89657 0.91943 0.95437 0.81589 0.93112 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.10 -1.23 5.88 -104.62 -0.62 -1.85 16 3 C -0.13 -1.63 9.70 -39.58 -0.38 -2.02 16 4 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 5 C -0.08 -1.31 9.14 -39.59 -0.36 -1.67 16 6 C -0.06 -0.90 4.53 -104.63 -0.47 -1.38 16 7 C 0.09 1.44 2.45 -67.21 -0.16 1.27 16 8 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 9 C -0.11 -1.45 6.52 -25.35 -0.17 -1.62 16 10 C -0.12 -1.62 7.00 -25.35 -0.18 -1.79 16 11 C 0.03 0.58 5.91 -2.19 -0.01 0.56 16 12 N -0.49 -8.84 4.20 -223.49 -0.94 -9.78 16 13 C 0.02 0.46 4.38 -3.83 -0.02 0.44 16 14 C 0.24 6.21 2.88 -27.88 -0.08 6.13 16 15 H 0.05 1.45 7.47 -51.93 -0.39 1.07 16 16 O -0.55 -14.62 12.60 -35.23 -0.44 -15.06 16 17 C -0.57 -15.98 8.76 -34.44 -0.30 -16.28 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 20 N -0.86 -25.69 12.84 55.43 0.71 -24.98 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.12 -1.67 9.34 -39.58 -0.37 -2.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 31 H 0.13 2.23 7.76 -52.48 -0.41 1.82 16 32 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.64 7.75 -51.93 -0.40 0.24 16 37 H 0.09 1.55 7.85 -51.93 -0.41 1.15 16 38 H 0.06 1.35 7.78 -51.93 -0.40 0.95 16 39 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 40 H 0.34 8.32 9.04 45.56 0.41 8.73 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.11 1.41 8.04 -52.48 -0.42 0.99 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -30.67 342.41 -9.94 -40.61 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.15 Total: 8.45 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -3.26 Total: -20.82 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.23 Total: -34.76 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.44 Total: -15.06 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.67 -9.94 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.712 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds