Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 119.99810 * 2 1 4 4 C 1.38215 * 119.99630 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00087 * 359.69972 * 4 3 2 6 6 C 1.38210 * 120.00107 * 0.55419 * 5 4 3 7 7 C 1.50700 * 120.00554 * 179.74337 * 6 5 4 8 8 H 1.08996 * 110.46530 * 197.31446 * 7 6 5 9 9 C 1.54380 * 110.41159 * 74.89585 * 7 6 5 10 10 C 1.54257 * 105.06252 * 217.37149 * 9 7 6 11 11 C 1.54372 * 105.06268 * 0.02562 * 10 9 7 12 12 N 1.48561 * 104.59608 * 23.84805 * 11 10 9 13 13 C 1.46893 * 111.00650 * 200.96005 * 12 11 10 14 14 C 1.53004 * 109.47285 * 285.42576 * 13 12 11 15 15 H 1.09000 * 109.47211 * 59.98987 * 14 13 12 16 16 O 1.42898 * 109.46678 * 299.99467 * 14 13 12 17 17 C 1.50701 * 109.47211 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 C 1.38216 * 120.00052 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46765 * 270.01720 * 1 2 3 27 27 H 1.08992 * 109.47026 * 30.01874 * 1 2 3 28 28 H 1.09002 * 109.47288 * 150.02114 * 1 2 3 29 29 H 1.07992 * 120.00671 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.99650 * 179.97438 * 4 3 2 31 31 H 1.08003 * 120.00219 * 180.29914 * 5 4 3 32 32 H 1.09003 * 110.32408 * 336.27213 * 9 7 6 33 33 H 1.09010 * 110.32014 * 98.37269 * 9 7 6 34 34 H 1.09005 * 110.32256 * 118.90343 * 10 9 7 35 35 H 1.09003 * 110.32325 * 241.00263 * 10 9 7 36 36 H 1.08998 * 110.41365 * 265.07431 * 11 10 9 37 37 H 1.09002 * 110.41579 * 142.63023 * 11 10 9 38 38 H 1.09000 * 109.47823 * 165.41937 * 13 12 11 39 39 H 1.09007 * 109.47029 * 45.41706 * 13 12 11 40 40 H 0.96702 * 114.00549 * 300.00185 * 16 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00006 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 0.0052 6 6 3.5806 -1.1970 -0.0001 7 6 4.3341 -2.5021 0.0003 8 1 3.6815 -3.3189 -0.3080 9 6 4.9240 -2.7828 1.3991 10 6 6.2973 -3.4326 1.1319 11 6 6.4219 -3.4893 -0.4057 12 7 5.5172 -2.4171 -0.8945 13 6 5.1360 -2.6473 -2.2943 14 6 6.3169 -2.3097 -3.2067 15 1 7.1657 -2.9444 -2.9521 16 8 6.6778 -0.9383 -3.0308 17 6 5.9259 -2.5465 -4.6427 18 1 4.9344 -2.9025 -4.8807 19 6 6.8359 -2.3145 -5.6521 20 7 8.0434 -1.8812 -5.3622 21 14 6.3538 -2.6154 -7.4316 22 1 4.9507 -3.0980 -7.4895 23 1 6.4743 -1.3492 -8.1980 24 1 7.2535 -3.6388 -8.0220 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6584 2.1326 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0000 0.0097 32 1 5.0469 -1.8515 1.9520 33 1 4.2802 -3.4678 1.9509 34 1 7.0944 -2.8203 1.5537 35 1 6.3292 -4.4373 1.5535 36 1 6.0961 -4.4606 -0.7780 37 1 7.4488 -3.2890 -0.7116 38 1 4.2871 -2.0127 -2.5488 39 1 4.8606 -3.6934 -2.4285 40 1 5.9686 -0.3150 -3.2395 41 1 8.6837 -1.7184 -6.0724 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = -50.135441 kcal Electronic energy + Delta-G solvation = -21670.171549 eV Core-core repulsion = 18613.523744 eV Total energy + Delta-G solvation = -3056.647804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90272 -39.27222 -37.40255 -34.24292 -33.74433 -33.06832 -32.48744 -29.54186 -28.78168 -27.55644 -26.32403 -23.64882 -22.96902 -22.63198 -21.31631 -20.52905 -19.00196 -17.57040 -16.91164 -16.68172 -16.44139 -16.29039 -15.79436 -15.65767 -15.20412 -14.92477 -14.55663 -14.30396 -13.91214 -13.81780 -13.66016 -13.37601 -13.12298 -13.07165 -12.95969 -12.85551 -12.57264 -12.36127 -12.15265 -12.05595 -11.96722 -11.79319 -11.64284 -11.36019 -11.02374 -10.71975 -10.11327 -9.61591 -9.34501 -9.28081 -8.14287 -6.40599 0.53142 0.59253 1.37703 1.38735 1.51034 2.37018 2.87775 3.10594 3.15270 3.71708 3.80159 3.98467 4.08555 4.14019 4.15218 4.31282 4.34678 4.39751 4.43925 4.57640 4.58706 4.67800 4.72302 4.84197 4.85902 4.88801 4.98365 4.99993 5.03006 5.08285 5.20544 5.24792 5.29463 5.39270 5.57767 5.69816 5.71129 5.76225 5.80852 6.00336 6.13003 6.21940 6.25660 6.72765 7.33343 7.59095 8.90363 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.005408 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.728424 B = 5175.841845 C = 6130.934151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.128 4.128 5 C -0.105 4.105 6 C -0.073 4.073 7 C 0.094 3.906 8 H 0.052 0.948 9 C -0.105 4.105 10 C -0.113 4.113 11 C 0.029 3.971 12 N -0.499 5.499 13 C 0.045 3.955 14 C 0.244 3.756 15 H 0.017 0.983 16 O -0.566 6.566 17 C -0.589 4.589 18 H 0.055 0.945 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.025 0.975 40 H 0.348 0.652 41 H 0.261 0.739 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 1.218 14.379 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.146 4.146 5 C -0.124 4.124 6 C -0.074 4.074 7 C -0.014 4.014 8 H 0.070 0.930 9 C -0.143 4.143 10 C -0.151 4.151 11 C -0.099 4.099 12 N -0.223 5.223 13 C -0.084 4.084 14 C 0.186 3.814 15 H 0.035 0.965 16 O -0.369 6.369 17 C -0.627 4.627 18 H 0.073 0.927 19 C -0.175 4.175 20 N -0.536 5.536 21 Si 0.784 3.216 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.149 4.149 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.192 0.808 41 H 0.070 0.930 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.844 1.500 14.511 18.791 hybrid contribution -0.508 -0.788 -1.603 1.857 sum -12.353 0.713 12.908 17.881 Atomic orbital electron populations 1.20795 0.89335 1.03326 1.03074 1.20171 0.97402 0.92707 0.99462 1.21278 0.94034 0.98340 1.01238 1.21372 0.94930 0.98141 1.00196 1.21008 1.00069 0.92213 0.99101 1.19710 0.93428 0.94443 0.99790 1.21634 0.91658 0.93716 0.94401 0.92957 1.22301 0.96136 1.01432 0.94382 1.22267 0.97640 1.01909 0.93250 1.23101 0.97626 0.92652 0.96486 1.65303 1.11610 1.43967 1.01405 1.22755 0.98950 0.97841 0.88811 1.19051 0.90868 0.80633 0.90810 0.96479 1.86495 1.42292 1.17430 1.90667 1.22066 0.99347 1.47695 0.93590 0.92704 1.25874 0.94518 0.93544 1.03547 1.70228 1.05718 1.43864 1.33761 0.85520 0.78630 0.77962 0.79517 1.18892 1.20342 1.20274 1.21069 0.93134 0.98492 1.02176 0.90041 0.90689 0.91343 0.84261 0.85105 0.87034 0.91058 0.89243 0.90937 0.89224 0.94347 0.92310 0.92506 0.95696 0.80801 0.92968 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.27 5.88 -19.87 -0.12 -2.39 16 3 C -0.13 -3.09 9.70 22.27 0.22 -2.88 16 4 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 5 C -0.11 -3.29 9.14 22.27 0.20 -3.09 16 6 C -0.07 -2.19 4.53 -19.87 -0.09 -2.28 16 7 C 0.09 2.83 2.45 44.31 0.11 2.93 16 8 H 0.05 1.55 7.88 -2.39 -0.02 1.54 16 9 C -0.10 -2.53 6.52 31.49 0.21 -2.32 16 10 C -0.11 -2.82 7.00 31.49 0.22 -2.60 16 11 C 0.03 1.00 5.91 86.45 0.51 1.51 16 12 N -0.50 -18.55 4.20 -860.98 -3.62 -22.17 16 13 C 0.05 1.96 4.38 86.31 0.38 2.34 16 14 C 0.24 13.04 2.88 29.85 0.09 13.13 16 15 H 0.02 1.03 7.47 -2.39 -0.02 1.02 16 16 O -0.57 -31.14 12.60 -148.98 -1.88 -33.01 16 17 C -0.59 -33.45 8.76 25.60 0.22 -33.22 16 18 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 19 C 0.03 1.58 5.40 84.65 0.46 2.04 16 20 N -0.90 -54.98 12.84 21.45 0.28 -54.70 16 21 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 C -0.13 -3.41 9.34 22.27 0.21 -3.20 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 29 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.11 3.90 7.76 -2.91 -0.02 3.87 16 32 H 0.07 1.74 7.70 -2.39 -0.02 1.72 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.29 7.75 -2.39 -0.02 1.27 16 37 H 0.06 2.27 7.85 -2.39 -0.02 2.26 16 38 H 0.06 2.50 7.78 -2.39 -0.02 2.49 16 39 H 0.02 1.08 7.77 -2.38 -0.02 1.06 16 40 H 0.35 17.62 9.04 -74.06 -0.67 16.95 16 41 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.13 2.89 8.04 -2.91 -0.02 2.86 16 Total: -1.00 -66.94 342.41 0.68 -66.27 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.32 Total: 31.67 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.55 Total: -34.33 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.34 Total: -76.87 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.88 Total: -33.01 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.94 0.68 -66.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.131 kcal (2) G-P(sol) polarization free energy of solvation -66.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds