Wall clock time and date at job start Mon Mar 30 2020 02:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38262 * 119.99550 * 2 1 4 4 C 1.38212 * 120.00113 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99820 * 359.76720 * 4 3 2 6 6 C 1.38222 * 119.99818 * 0.45999 * 5 4 3 7 7 C 1.50696 * 119.99823 * 179.79030 * 6 5 4 8 8 H 1.08999 * 110.00959 * 5.61828 * 7 6 5 9 9 C 1.54321 * 109.89013 * 126.73736 * 7 6 5 10 10 C 1.55139 * 103.01796 * 141.68875 * 9 7 6 11 11 C 1.54909 * 101.65485 * 324.34259 * 10 9 7 12 12 N 1.47449 * 109.88730 * 244.50662 * 7 6 5 13 13 C 1.46901 * 110.99942 * 3.85167 * 12 7 6 14 14 C 1.52997 * 109.46715 * 164.25242 * 13 12 7 15 15 H 1.08998 * 109.47876 * 59.99831 * 14 13 12 16 16 O 1.42906 * 109.47007 * 299.99346 * 14 13 12 17 17 C 1.50702 * 109.47019 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99856 * 359.97438 * 17 14 13 19 19 C 1.37872 * 120.00292 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99909 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.46974 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.46819 * 299.99315 * 21 19 17 24 24 H 1.48497 * 109.47246 * 59.99469 * 21 19 17 25 25 C 1.38211 * 120.00362 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47294 * 270.01787 * 1 2 3 27 27 H 1.08994 * 109.47526 * 30.02783 * 1 2 3 28 28 H 1.09002 * 109.46725 * 150.02874 * 1 2 3 29 29 H 1.08005 * 119.99998 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00107 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00317 * 180.24987 * 5 4 3 32 32 H 1.08997 * 110.70360 * 260.07204 * 9 7 6 33 33 H 1.08999 * 110.70359 * 23.30571 * 9 7 6 34 34 H 1.08992 * 110.99124 * 82.44289 * 10 9 7 35 35 H 1.09007 * 110.98761 * 206.25748 * 10 9 7 36 36 H 1.08994 * 110.37502 * 278.24430 * 11 10 9 37 37 H 1.08998 * 110.36988 * 155.90176 * 11 10 9 38 38 H 1.08993 * 109.46921 * 44.25010 * 13 12 7 39 39 H 1.09003 * 109.47108 * 284.24775 * 13 12 7 40 40 H 0.96698 * 114.00491 * 300.00602 * 16 14 13 41 41 H 0.97000 * 119.99882 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.00093 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1976 -0.0005 5 6 4.2717 0.0003 0.0038 6 6 3.5807 -1.1968 -0.0010 7 6 4.3343 -2.5018 -0.0010 8 1 5.4031 -2.3153 0.1033 9 6 3.8412 -3.3929 1.1585 10 6 3.8490 -4.8135 0.5351 11 6 3.4211 -4.5174 -0.9239 12 7 4.0726 -3.2321 -1.2549 13 6 3.2357 -2.4362 -2.1628 14 6 3.3065 -3.0281 -3.5719 15 1 2.9455 -4.0564 -3.5527 16 8 4.6599 -3.0068 -4.0301 17 6 2.4485 -2.2113 -4.5035 18 1 1.9066 -1.3558 -4.1279 19 6 2.3544 -2.5566 -5.8349 20 7 3.0138 -3.5986 -6.2921 21 14 1.2903 -1.5445 -6.9895 22 1 1.3591 -2.1189 -8.3572 23 1 -0.1160 -1.5662 -6.5131 24 1 1.7825 -0.1437 -7.0161 25 6 2.1981 -1.1969 0.0005 26 1 -0.3634 0.0003 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.6581 2.1327 -0.0004 30 1 4.1202 2.1329 -0.0010 31 1 5.3517 0.0003 0.0075 32 1 4.5268 -3.3393 2.0041 33 1 2.8327 -3.1098 1.4600 34 1 4.8475 -5.2491 0.5686 35 1 3.1254 -5.4611 1.0304 36 1 2.3374 -4.4216 -0.9896 37 1 3.7744 -5.3045 -1.5901 38 1 3.5968 -1.4080 -2.1820 39 1 2.2034 -2.4524 -1.8134 40 1 5.0469 -2.1217 -4.0726 41 1 2.9480 -3.8413 -7.2290 42 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:12 Heat of formation + Delta-G solvation = -22.601866 kcal Electronic energy + Delta-G solvation = -22177.991154 eV Core-core repulsion = 19122.537295 eV Total energy + Delta-G solvation = -3055.453859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25307 -37.85014 -35.39796 -32.82989 -32.02993 -31.64841 -31.14266 -27.85468 -27.40647 -26.74367 -24.43131 -22.65169 -21.44166 -21.26789 -20.25128 -19.03370 -16.92481 -16.39314 -15.75223 -15.27783 -14.84903 -14.53777 -14.33291 -14.11076 -13.99088 -13.60268 -13.22311 -13.02017 -12.78712 -12.54118 -12.30265 -11.99252 -11.93187 -11.52754 -11.46076 -11.04982 -10.91465 -10.86824 -10.82333 -10.73805 -10.57374 -10.45848 -10.23643 -9.98910 -9.00811 -8.52654 -8.48596 -8.35963 -7.99348 -7.52384 -5.93726 -4.11415 1.53987 1.59097 3.31607 3.36763 3.38644 3.89370 4.40508 4.65814 4.76225 4.88181 5.00037 5.02306 5.08013 5.27754 5.33310 5.34766 5.46571 5.62084 5.66589 5.68028 5.76808 5.79949 5.90534 5.94552 6.05229 6.08214 6.16689 6.25075 6.29081 6.39009 6.42773 6.47899 6.62621 6.69955 6.75772 6.85396 6.96067 7.20216 7.53354 7.68919 7.84673 7.96692 8.29448 8.92682 9.53949 9.71069 11.10421 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.006927 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.093030 B = 4040.924410 C = 5154.910952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.079 4.079 7 C 0.106 3.894 8 H 0.086 0.914 9 C -0.134 4.134 10 C -0.129 4.129 11 C 0.044 3.956 12 N -0.504 5.504 13 C 0.026 3.974 14 C 0.239 3.761 15 H 0.050 0.950 16 O -0.554 6.554 17 C -0.570 4.570 18 H 0.052 0.948 19 C 0.080 3.920 20 N -0.859 5.859 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.104 4.104 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.341 0.659 41 H 0.260 0.740 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 4.913 15.927 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.002 4.002 8 H 0.104 0.896 9 C -0.173 4.173 10 C -0.167 4.167 11 C -0.084 4.084 12 N -0.227 5.227 13 C -0.101 4.101 14 C 0.181 3.819 15 H 0.067 0.933 16 O -0.356 6.356 17 C -0.609 4.609 18 H 0.070 0.930 19 C -0.126 4.126 20 N -0.495 5.495 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.123 4.123 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.183 0.817 41 H 0.070 0.930 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.477 4.016 15.460 15.980 hybrid contribution -1.397 1.430 -0.392 2.037 sum -1.874 5.446 15.068 16.131 Atomic orbital electron populations 1.20774 0.91471 1.03014 1.01748 1.19830 0.95909 0.93110 0.99791 1.20938 0.94282 0.97217 1.02000 1.21038 0.94244 0.97770 1.00510 1.20986 0.99673 0.91896 1.01144 1.20172 0.93851 0.95480 0.98508 1.21566 0.98910 0.89493 0.90263 0.89601 1.22913 1.01423 0.95239 0.97690 1.22726 1.01845 0.96275 0.95900 1.23081 0.96862 0.93377 0.95111 1.63983 1.45736 1.03124 1.09888 1.23494 0.93541 0.97061 0.95996 1.19283 0.80994 0.96106 0.85530 0.93250 1.86551 1.28863 1.30722 1.89417 1.21618 1.30412 1.14379 0.94472 0.92969 1.25007 0.94738 0.94628 0.98198 1.70076 1.39684 1.25127 1.14622 0.86788 0.81065 0.80706 0.80110 1.21194 1.20268 1.20184 1.20839 0.93640 0.97354 1.00440 0.91601 0.91640 0.91423 0.86580 0.86408 0.86251 0.91183 0.91377 0.90808 0.91320 0.94042 0.90030 0.91589 0.94770 0.81664 0.93041 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 2 C -0.09 -1.23 5.88 -104.62 -0.62 -1.85 16 3 C -0.13 -1.70 9.70 -39.58 -0.38 -2.08 16 4 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 5 C -0.12 -1.69 9.55 -39.58 -0.38 -2.07 16 6 C -0.08 -1.21 2.97 -104.62 -0.31 -1.52 16 7 C 0.11 1.62 3.64 -67.87 -0.25 1.37 16 8 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 9 C -0.13 -1.71 6.33 -24.91 -0.16 -1.87 16 10 C -0.13 -1.68 7.08 -24.59 -0.17 -1.86 16 11 C 0.04 0.73 6.07 -2.29 -0.01 0.72 16 12 N -0.50 -9.37 4.99 -224.72 -1.12 -10.49 16 13 C 0.03 0.56 3.03 -3.82 -0.01 0.55 16 14 C 0.24 6.25 2.89 -27.88 -0.08 6.17 16 15 H 0.05 1.42 7.70 -51.93 -0.40 1.02 16 16 O -0.55 -15.00 12.60 -35.23 -0.44 -15.45 16 17 C -0.57 -16.06 8.76 -34.44 -0.30 -16.36 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.08 2.30 5.40 -17.82 -0.10 2.20 16 20 N -0.86 -25.97 12.84 55.43 0.71 -25.26 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C -0.10 -1.60 5.99 -39.59 -0.24 -1.84 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.52 7.97 -52.49 -0.42 1.10 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.86 6.58 -51.93 -0.34 0.52 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.04 0.71 7.53 -51.93 -0.39 0.32 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.07 1.46 6.47 -51.93 -0.34 1.12 16 39 H 0.03 0.73 5.36 -51.93 -0.28 0.45 16 40 H 0.34 8.42 9.04 45.56 0.41 8.84 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.12 1.79 6.76 -52.49 -0.35 1.43 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -31.42 333.01 -9.76 -41.18 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.86 Total: 9.76 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.05 Total: -21.38 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.41 Total: -35.74 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.44 Total: -15.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.42 -9.76 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.582 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds