Wall clock time and date at job start Mon Mar 30 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00147 * 2 1 4 4 C 1.38204 * 120.00058 * 180.20951 * 3 2 1 5 5 C 1.38260 * 120.00013 * 359.85556 * 4 3 2 6 6 C 1.38212 * 120.00188 * 359.95730 * 5 4 3 7 7 C 1.38209 * 120.00218 * 179.81127 * 2 1 3 8 8 C 1.50703 * 119.99878 * 0.02562 * 7 2 1 9 9 H 1.08996 * 110.36875 * 37.37490 * 8 7 2 10 10 C 1.54380 * 110.51138 * 274.95415 * 8 7 2 11 11 C 1.54257 * 105.06252 * 217.31704 * 10 8 7 12 12 C 1.54372 * 105.06268 * 0.02562 * 11 10 8 13 13 N 1.48561 * 104.59608 * 23.84805 * 12 11 10 14 14 C 1.46893 * 111.00650 * 200.96005 * 13 12 11 15 15 C 1.53004 * 109.47285 * 285.42576 * 14 13 12 16 16 H 1.09000 * 109.47211 * 59.98987 * 15 14 13 17 17 O 1.42898 * 109.46678 * 299.99467 * 15 14 13 18 18 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 15 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 15 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 H 1.08999 * 109.47555 * 270.18851 * 1 2 3 27 27 H 1.09003 * 109.47448 * 30.19052 * 1 2 3 28 28 H 1.09003 * 109.46847 * 150.18747 * 1 2 3 29 29 H 1.07997 * 119.99547 * 0.04572 * 3 2 1 30 30 H 1.07997 * 120.00035 * 179.83175 * 4 3 2 31 31 H 1.08006 * 119.99970 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.99835 * 179.97438 * 6 5 4 33 33 H 1.09003 * 110.32408 * 336.21769 * 10 8 7 34 34 H 1.09010 * 110.32014 * 98.31824 * 10 8 7 35 35 H 1.09005 * 110.32256 * 118.90343 * 11 10 8 36 36 H 1.08998 * 110.32614 * 241.10376 * 11 10 8 37 37 H 1.08998 * 110.41365 * 265.07431 * 12 11 10 38 38 H 1.09002 * 110.41579 * 142.63023 * 12 11 10 39 39 H 1.09000 * 109.47823 * 165.41937 * 14 13 12 40 40 H 1.09007 * 109.47029 * 45.41706 * 14 13 12 41 41 H 0.96702 * 114.00549 * 300.00185 * 17 15 14 42 42 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0044 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0018 7 6 2.1980 -1.1969 0.0039 8 6 1.4445 -2.5020 0.0077 9 1 0.5519 -2.4265 -0.6132 10 6 1.0654 -2.9036 1.4493 11 6 1.2225 -4.4376 1.4925 12 6 1.6839 -4.8338 0.0737 13 7 2.3175 -3.6052 -0.4706 14 6 2.3624 -3.6420 -1.9384 15 6 3.4518 -4.6163 -2.3911 16 1 3.2296 -5.6128 -2.0092 17 8 4.7170 -4.1841 -1.8865 18 6 3.4975 -4.6545 -3.8969 19 1 2.8173 -4.0451 -4.4734 20 6 4.4035 -5.4721 -4.5385 21 7 4.4397 -5.5095 -5.8527 22 14 5.5797 -6.5265 -3.5414 23 1 4.9550 -7.8467 -3.2732 24 1 6.8389 -6.7205 -4.3044 25 1 5.8803 -5.8504 -2.2538 26 1 -0.3634 0.0034 1.0276 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 1.6582 2.1326 0.0007 30 1 4.1203 2.1326 -0.0071 31 1 5.3516 0.0000 -0.0096 32 1 4.1206 -2.1322 -0.0033 33 1 1.7414 -2.4335 2.1635 34 1 0.0343 -2.6209 1.6623 35 1 1.9756 -4.7204 2.2281 36 1 0.2681 -4.9095 1.7262 37 1 0.8289 -5.1231 -0.5373 38 1 2.4094 -5.6459 0.1227 39 1 2.5847 -2.6455 -2.3203 40 1 1.3974 -3.9717 -2.3234 41 1 4.9797 -3.3030 -2.1861 42 1 5.0773 -6.0844 -6.3041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:15 Heat of formation + Delta-G solvation = -22.030397 kcal Electronic energy + Delta-G solvation = -22037.409956 eV Core-core repulsion = 18981.980877 eV Total energy + Delta-G solvation = -3055.429078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94753 -38.01582 -35.85153 -32.88342 -32.19484 -31.73925 -31.39741 -28.03229 -27.76672 -26.57786 -24.56352 -22.70778 -21.33512 -21.08139 -19.81893 -19.74236 -17.30441 -16.59604 -15.64620 -15.16557 -15.04947 -14.68756 -14.31595 -14.26124 -14.05117 -13.83278 -13.21424 -12.94567 -12.86082 -12.49664 -12.42386 -12.32264 -12.09890 -11.96059 -11.50820 -11.35804 -11.02936 -10.93430 -10.86491 -10.65026 -10.60082 -10.33317 -10.27859 -9.84576 -9.00281 -8.59133 -8.52664 -8.39197 -8.22431 -7.91409 -6.10086 -4.21077 1.54252 1.65240 3.41304 3.50939 3.78999 3.96203 4.29208 4.56860 4.80209 4.87755 4.97807 5.03830 5.15846 5.20942 5.26209 5.31140 5.37024 5.47466 5.60487 5.69056 5.74489 5.80310 5.88535 5.91070 5.94154 5.96826 6.02372 6.08628 6.21495 6.27825 6.34649 6.35465 6.39450 6.65251 6.68006 6.81043 6.88128 7.19086 7.28672 7.41204 7.49371 7.71568 8.32630 8.86843 9.14053 9.55178 11.00695 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.005779 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.663089 B = 4843.746830 C = 5482.091822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.068 4.068 8 C 0.096 3.904 9 H 0.058 0.942 10 C -0.111 4.111 11 C -0.123 4.123 12 C 0.033 3.967 13 N -0.493 5.493 14 C 0.030 3.970 15 C 0.207 3.793 16 H 0.050 0.950 17 O -0.570 6.570 18 C -0.565 4.565 19 H 0.070 0.930 20 C 0.084 3.916 21 N -0.895 5.895 22 Si 0.871 3.129 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.214 1.214 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.352 0.648 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 9.756 15.297 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.068 4.068 8 C -0.013 4.013 9 H 0.075 0.925 10 C -0.149 4.149 11 C -0.161 4.161 12 C -0.095 4.095 13 N -0.217 5.217 14 C -0.098 4.098 15 C 0.149 3.851 16 H 0.068 0.932 17 O -0.375 6.375 18 C -0.603 4.603 19 H 0.088 0.912 20 C -0.121 4.121 21 N -0.532 5.532 22 Si 0.697 3.303 23 H -0.216 1.216 24 H -0.224 1.224 25 H -0.137 1.137 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.198 0.802 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.071 9.153 15.611 19.088 hybrid contribution -0.322 -0.102 -0.596 0.685 sum -6.392 9.052 15.015 18.662 Atomic orbital electron populations 1.20820 0.91844 1.02604 1.01920 1.19688 0.95657 0.92770 1.00752 1.20861 0.94268 0.96961 1.02646 1.21066 0.94243 0.97919 1.00966 1.21207 0.99853 0.92625 1.01221 1.21329 0.93768 0.98873 0.96131 1.19516 0.94042 0.92955 1.00331 1.21538 0.93757 0.90126 0.95831 0.92464 1.22262 1.00822 0.95892 0.95890 1.22298 1.00874 0.95359 0.97573 1.23087 0.97699 0.94411 0.94296 1.65337 1.44536 1.01002 1.10809 1.23008 0.99944 1.01785 0.85044 1.19619 0.80230 0.92421 0.92865 0.93181 1.86654 1.38680 1.36463 1.75673 1.21527 1.21221 1.27347 0.90162 0.91233 1.24981 0.96627 0.95773 0.94674 1.69966 1.36401 1.38692 1.08142 0.87029 0.79982 0.79749 0.83505 1.21580 1.22355 1.13667 0.91468 0.91910 0.91473 0.86723 0.86732 0.86360 0.83762 0.91127 0.91758 0.91176 0.91772 0.94045 0.89897 0.91266 0.94827 0.80177 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.60 36.00 0.35 -0.87 16 2 C -0.09 -1.15 5.88 -104.63 -0.62 -1.77 16 3 C -0.13 -1.59 9.70 -39.58 -0.38 -1.98 16 4 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 5 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 6 C -0.08 -1.26 9.30 -39.58 -0.37 -1.63 16 7 C -0.07 -0.99 4.59 -104.62 -0.48 -1.47 16 8 C 0.10 1.38 1.90 -67.21 -0.13 1.25 16 9 H 0.06 0.83 6.19 -51.93 -0.32 0.51 16 10 C -0.11 -1.34 6.54 -25.35 -0.17 -1.50 16 11 C -0.12 -1.49 7.00 -25.35 -0.18 -1.67 16 12 C 0.03 0.50 5.91 -2.19 -0.01 0.49 16 13 N -0.49 -8.25 3.57 -223.48 -0.80 -9.05 16 14 C 0.03 0.60 4.31 -3.83 -0.02 0.58 16 15 C 0.21 4.81 2.37 -27.88 -0.07 4.74 16 16 H 0.05 1.21 6.89 -51.93 -0.36 0.86 16 17 O -0.57 -12.94 10.02 -35.23 -0.35 -13.29 16 18 C -0.56 -15.74 9.34 -34.44 -0.32 -16.06 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 21 N -0.89 -27.53 13.96 55.43 0.77 -26.76 16 22 Si 0.87 22.01 26.99 -169.99 -4.59 17.42 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.21 -5.30 5.31 56.52 0.30 -5.00 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.07 0.73 6.09 -51.93 -0.32 0.41 16 29 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.14 2.40 7.18 -52.49 -0.38 2.03 16 33 H 0.07 0.87 7.86 -51.93 -0.41 0.47 16 34 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.63 7.75 -51.93 -0.40 0.23 16 38 H 0.08 1.34 7.85 -51.93 -0.41 0.93 16 39 H 0.07 1.42 7.78 -51.93 -0.40 1.01 16 40 H 0.03 0.68 7.77 -51.93 -0.40 0.27 16 41 H 0.35 7.34 9.04 45.56 0.41 7.75 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -30.95 331.59 -9.27 -40.22 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.02 Total: 8.11 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.28 Total: -21.66 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.02 Total: -35.80 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.35 Total: -13.29 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.59 Total: 17.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.95 -9.27 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.194 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds