Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00147 * 2 1 4 4 C 1.38204 * 120.00058 * 180.20951 * 3 2 1 5 5 C 1.38260 * 120.00013 * 359.85556 * 4 3 2 6 6 C 1.38212 * 120.00188 * 359.95730 * 5 4 3 7 7 C 1.38209 * 120.00218 * 179.81127 * 2 1 3 8 8 C 1.50703 * 119.99878 * 0.02562 * 7 2 1 9 9 H 1.08996 * 110.36875 * 37.37490 * 8 7 2 10 10 C 1.54380 * 110.51138 * 274.95415 * 8 7 2 11 11 C 1.54257 * 105.06252 * 217.31704 * 10 8 7 12 12 C 1.54372 * 105.06268 * 0.02562 * 11 10 8 13 13 N 1.48561 * 104.59608 * 23.84805 * 12 11 10 14 14 C 1.46893 * 111.00650 * 200.96005 * 13 12 11 15 15 C 1.53004 * 109.47285 * 285.42576 * 14 13 12 16 16 H 1.09000 * 109.47211 * 59.98987 * 15 14 13 17 17 O 1.42898 * 109.46678 * 299.99467 * 15 14 13 18 18 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 15 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 15 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 H 1.08999 * 109.47555 * 270.18851 * 1 2 3 27 27 H 1.09003 * 109.47448 * 30.19052 * 1 2 3 28 28 H 1.09003 * 109.46847 * 150.18747 * 1 2 3 29 29 H 1.07997 * 119.99547 * 0.04572 * 3 2 1 30 30 H 1.07997 * 120.00035 * 179.83175 * 4 3 2 31 31 H 1.08006 * 119.99970 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.99835 * 179.97438 * 6 5 4 33 33 H 1.09003 * 110.32408 * 336.21769 * 10 8 7 34 34 H 1.09010 * 110.32014 * 98.31824 * 10 8 7 35 35 H 1.09005 * 110.32256 * 118.90343 * 11 10 8 36 36 H 1.08998 * 110.32614 * 241.10376 * 11 10 8 37 37 H 1.08998 * 110.41365 * 265.07431 * 12 11 10 38 38 H 1.09002 * 110.41579 * 142.63023 * 12 11 10 39 39 H 1.09000 * 109.47823 * 165.41937 * 14 13 12 40 40 H 1.09007 * 109.47029 * 45.41706 * 14 13 12 41 41 H 0.96702 * 114.00549 * 300.00185 * 17 15 14 42 42 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0044 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0018 7 6 2.1980 -1.1969 0.0039 8 6 1.4445 -2.5020 0.0077 9 1 0.5519 -2.4265 -0.6132 10 6 1.0654 -2.9036 1.4493 11 6 1.2225 -4.4376 1.4925 12 6 1.6839 -4.8338 0.0737 13 7 2.3175 -3.6052 -0.4706 14 6 2.3624 -3.6420 -1.9384 15 6 3.4518 -4.6163 -2.3911 16 1 3.2296 -5.6128 -2.0092 17 8 4.7170 -4.1841 -1.8865 18 6 3.4975 -4.6545 -3.8969 19 1 2.8173 -4.0451 -4.4734 20 6 4.4035 -5.4721 -4.5385 21 7 4.4397 -5.5095 -5.8527 22 14 5.5797 -6.5265 -3.5414 23 1 4.9550 -7.8467 -3.2732 24 1 6.8389 -6.7205 -4.3044 25 1 5.8803 -5.8504 -2.2538 26 1 -0.3634 0.0034 1.0276 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 1.6582 2.1326 0.0007 30 1 4.1203 2.1326 -0.0071 31 1 5.3516 0.0000 -0.0096 32 1 4.1206 -2.1322 -0.0033 33 1 1.7414 -2.4335 2.1635 34 1 0.0343 -2.6209 1.6623 35 1 1.9756 -4.7204 2.2281 36 1 0.2681 -4.9095 1.7262 37 1 0.8289 -5.1231 -0.5373 38 1 2.4094 -5.6459 0.1227 39 1 2.5847 -2.6455 -2.3203 40 1 1.3974 -3.9717 -2.3234 41 1 4.9797 -3.3030 -2.1861 42 1 5.0773 -6.0844 -6.3041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809572252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -41.646220 kcal Electronic energy + Delta-G solvation = -22038.260562 eV Core-core repulsion = 18981.980877 eV Total energy + Delta-G solvation = -3056.279684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05338 -39.20451 -37.61562 -34.41832 -33.88322 -33.06115 -32.45028 -29.83885 -28.82557 -27.51532 -26.32955 -23.88811 -22.68284 -22.24894 -21.25985 -20.83762 -19.34294 -17.66705 -16.97991 -16.73645 -16.44327 -16.13933 -15.93936 -15.76103 -15.21669 -14.87752 -14.74567 -14.37667 -14.01814 -13.84210 -13.78375 -13.49835 -13.23210 -13.11634 -12.93424 -12.87694 -12.47514 -12.37592 -12.21674 -12.08383 -11.80825 -11.69618 -11.61705 -11.28721 -11.06513 -10.81299 -10.12981 -9.54989 -9.36491 -9.30089 -8.36490 -6.51162 0.53979 0.62987 1.38567 1.44137 1.75493 2.43500 2.93525 3.00928 3.05070 3.72001 3.78337 3.98595 4.09379 4.10753 4.16385 4.21837 4.29338 4.36664 4.40779 4.51469 4.53781 4.69065 4.75848 4.81968 4.87028 4.93266 4.96956 5.00921 5.03169 5.05587 5.23175 5.28763 5.31467 5.38894 5.43824 5.48505 5.68834 5.76639 5.81521 6.05785 6.09941 6.18070 6.28388 6.61087 7.20576 7.35314 8.77952 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.005779 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.663089 B = 4843.746830 C = 5482.091822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.085 4.085 8 C 0.097 3.903 9 H 0.056 0.944 10 C -0.103 4.103 11 C -0.114 4.114 12 C 0.025 3.975 13 N -0.500 5.500 14 C 0.050 3.950 15 C 0.217 3.783 16 H 0.046 0.954 17 O -0.569 6.569 18 C -0.567 4.567 19 H 0.032 0.968 20 C 0.030 3.970 21 N -0.940 5.940 22 Si 0.939 3.061 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.204 1.204 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.024 0.976 41 H 0.362 0.638 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 10.679 17.701 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.122 4.122 7 C -0.085 4.085 8 C -0.011 4.011 9 H 0.073 0.927 10 C -0.141 4.141 11 C -0.151 4.151 12 C -0.103 4.103 13 N -0.223 5.223 14 C -0.079 4.079 15 C 0.158 3.842 16 H 0.064 0.936 17 O -0.375 6.375 18 C -0.605 4.605 19 H 0.050 0.950 20 C -0.170 4.170 21 N -0.580 5.580 22 Si 0.763 3.237 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.126 1.126 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.208 0.792 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.714 10.089 18.033 21.727 hybrid contribution -0.166 -0.292 -1.378 1.418 sum -6.880 9.797 16.655 20.511 Atomic orbital electron populations 1.20856 0.90025 1.02971 1.03135 1.20010 0.97123 0.92443 1.00041 1.21234 0.94459 0.97797 1.01544 1.21390 0.94680 0.98391 0.99936 1.21391 1.00558 0.92717 1.01417 1.21245 0.94306 0.98664 0.98022 1.19626 0.93931 0.93659 1.01289 1.21601 0.93079 0.89310 0.97144 0.92659 1.22250 1.02176 0.95684 0.94002 1.22270 1.02141 0.95461 0.95273 1.23178 0.97244 0.93478 0.96369 1.65258 1.46145 1.02722 1.08209 1.22572 0.98013 0.99793 0.87504 1.19374 0.81636 0.93320 0.89850 0.93576 1.86586 1.38328 1.37226 1.75322 1.21849 1.19938 1.26101 0.92606 0.94962 1.25842 0.98466 0.97181 0.95499 1.70088 1.37780 1.40186 1.09912 0.85978 0.77570 0.78005 0.82119 1.21147 1.22405 1.12627 0.89714 0.90574 0.92086 0.84153 0.84286 0.85418 0.85908 0.91321 0.89308 0.90748 0.89343 0.94196 0.91180 0.92510 0.95764 0.79171 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.60 71.23 0.68 -1.40 16 2 C -0.10 -2.31 5.88 -19.87 -0.12 -2.43 16 3 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 4 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.14 -3.77 10.05 22.27 0.22 -3.54 16 6 C -0.10 -3.15 9.30 22.27 0.21 -2.94 16 7 C -0.08 -2.38 4.59 -19.87 -0.09 -2.48 16 8 C 0.10 2.67 1.90 44.31 0.08 2.75 16 9 H 0.06 1.55 6.19 -2.39 -0.01 1.54 16 10 C -0.10 -2.24 6.54 31.49 0.21 -2.03 16 11 C -0.11 -2.47 7.00 31.49 0.22 -2.25 16 12 C 0.03 0.74 5.91 86.45 0.51 1.25 16 13 N -0.50 -16.56 3.57 -860.97 -3.08 -19.64 16 14 C 0.05 2.01 4.31 86.31 0.37 2.38 16 15 C 0.22 10.16 2.37 29.85 0.07 10.23 16 16 H 0.05 2.23 6.89 -2.39 -0.02 2.21 16 17 O -0.57 -25.63 10.02 -148.98 -1.49 -27.12 16 18 C -0.57 -32.46 9.34 25.60 0.24 -32.23 16 19 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 20 C 0.03 1.75 5.47 84.65 0.46 2.21 16 21 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 22 Si 0.94 45.99 26.99 68.60 1.85 47.85 16 23 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.20 -9.60 5.31 99.48 0.53 -9.07 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 28 H 0.06 1.20 6.09 -2.39 -0.01 1.18 16 29 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.12 4.17 7.18 -2.91 -0.02 4.15 16 33 H 0.07 1.54 7.86 -2.39 -0.02 1.52 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 38 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 39 H 0.06 2.40 7.78 -2.39 -0.02 2.38 16 40 H 0.02 1.00 7.77 -2.38 -0.02 0.98 16 41 H 0.36 15.08 9.04 -74.06 -0.67 14.41 16 42 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -67.46 331.59 1.25 -66.21 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.15 Total: 27.52 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.51 Total: -35.83 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -2.78 Total: -78.62 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.49 Total: -27.12 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.85 Total: 47.85 kcal Total: -67.46 1.25 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.563 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds