Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.94156 * 2 1 4 4 C 1.38125 * 120.05352 * 179.97438 * 3 2 1 5 5 C 1.38758 * 119.94246 * 359.76994 * 4 3 2 6 6 O 1.35902 * 120.05469 * 180.27493 * 5 4 3 7 7 C 1.38704 * 119.88676 * 0.48286 * 5 4 3 8 8 C 1.50706 * 120.02710 * 179.79580 * 7 5 4 9 9 N 1.46902 * 109.46577 * 284.72146 * 8 7 5 10 10 C 1.46842 * 111.00276 * 294.21004 * 9 8 7 11 11 C 1.53037 * 109.52367 * 174.16333 * 10 9 8 12 12 C 1.53120 * 109.27865 * 59.17943 * 11 10 9 13 13 C 1.53120 * 109.16082 * 302.34553 * 12 11 10 14 14 H 1.08997 * 109.50175 * 297.71372 * 13 12 11 15 15 C 1.50703 * 109.50362 * 177.59655 * 13 12 11 16 16 H 1.08002 * 119.99823 * 240.19601 * 15 13 12 17 17 C 1.37879 * 119.99862 * 60.19530 * 15 13 12 18 18 N 1.31508 * 120.00048 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99534 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47380 * 60.00234 * 19 17 15 21 21 H 1.48507 * 109.46922 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47389 * 299.99832 * 19 17 15 23 23 C 1.46850 * 110.99680 * 170.00071 * 9 8 7 24 24 C 1.38163 * 119.94742 * 359.51489 * 7 5 4 25 25 H 1.09000 * 109.47193 * 269.97626 * 1 2 3 26 26 H 1.09001 * 109.47058 * 29.97734 * 1 2 3 27 27 H 1.09003 * 109.47314 * 149.97662 * 1 2 3 28 28 H 1.07998 * 119.97582 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.03031 * 180.02562 * 4 3 2 30 30 H 0.96696 * 114.00021 * 270.20722 * 6 5 4 31 31 H 1.09000 * 109.47318 * 44.71654 * 8 7 5 32 32 H 1.09000 * 109.47161 * 164.72284 * 8 7 5 33 33 H 1.09005 * 109.46184 * 294.17602 * 10 9 8 34 34 H 1.08998 * 109.46697 * 54.14510 * 10 9 8 35 35 H 1.08996 * 109.50638 * 299.23489 * 11 10 9 36 36 H 1.08999 * 109.53439 * 179.13672 * 11 10 9 37 37 H 1.08997 * 109.52404 * 182.44177 * 12 11 10 38 38 H 1.08999 * 109.57857 * 62.28191 * 12 11 10 39 39 H 0.96998 * 119.99940 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46046 * 305.85403 * 23 9 8 41 41 H 1.08998 * 109.46430 * 65.81938 * 23 9 8 42 42 H 1.08006 * 119.97574 * 180.25353 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0059 6 8 5.6324 0.0000 0.0121 7 6 3.5787 -1.2005 0.0006 8 6 4.3303 -2.5068 0.0017 9 7 4.8857 -2.7532 -1.3357 10 6 3.8157 -2.9605 -2.3199 11 6 4.4230 -3.0688 -3.7204 12 6 5.4081 -4.2405 -3.7552 13 6 6.4847 -4.0238 -2.6882 14 1 7.0423 -3.1147 -2.9133 15 6 7.4249 -5.2016 -2.6757 16 1 7.5360 -5.7943 -1.7797 17 6 8.1433 -5.5223 -3.8080 18 7 8.0084 -4.8001 -4.8988 19 14 9.3092 -6.9817 -3.7921 20 1 8.5482 -8.2199 -3.4874 21 1 9.9564 -7.1126 -5.1223 22 1 10.3503 -6.7723 -2.7541 23 6 5.8176 -3.8880 -1.3176 24 6 2.1971 -1.1979 0.0001 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6559 2.1328 0.0004 29 1 4.1171 2.1370 0.0010 30 1 6.0297 0.0015 -0.8695 31 1 5.1411 -2.4589 0.7286 32 1 3.6510 -3.3166 0.2680 33 1 3.2791 -3.8798 -2.0847 34 1 3.1245 -2.1184 -2.2879 35 1 4.9481 -2.1446 -3.9618 36 1 3.6304 -3.2380 -4.4493 37 1 5.8753 -4.2946 -4.7384 38 1 4.8767 -5.1705 -3.5528 39 1 8.5135 -5.0260 -5.6955 40 1 6.5805 -3.7192 -0.5576 41 1 5.2717 -4.8027 -1.0871 42 1 1.6556 -2.1325 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -32.426714 kcal Electronic energy + Delta-G solvation = -21585.363638 eV Core-core repulsion = 18529.483742 eV Total energy + Delta-G solvation = -3055.879896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97875 -37.95213 -36.68376 -34.10543 -32.30737 -31.58154 -30.65401 -29.70278 -26.50192 -25.65115 -24.91249 -22.42325 -21.95027 -21.52759 -20.13872 -18.60262 -18.00168 -16.36882 -15.97554 -15.60186 -15.16673 -14.71255 -14.51482 -14.11409 -13.74250 -13.55373 -13.53721 -13.15186 -12.84175 -12.65554 -12.42597 -12.15070 -11.89834 -11.68622 -11.53014 -11.37254 -11.05082 -10.92084 -10.67100 -10.65695 -10.21908 -10.10734 -9.82505 -9.46071 -9.06335 -8.79048 -8.69854 -8.29109 -8.27678 -7.67034 -5.96464 -4.02525 1.30842 1.37307 3.33135 3.37786 3.40339 3.61609 4.41707 4.50480 4.62420 4.81395 4.86510 4.94056 5.26058 5.28688 5.33682 5.46822 5.57636 5.66925 5.70216 5.73980 5.86810 5.89049 6.05360 6.07820 6.14553 6.26582 6.34892 6.41605 6.53111 6.56407 6.65083 6.73319 6.76124 6.89891 6.97966 7.22342 7.40592 7.67393 7.75933 7.82322 7.94744 8.09037 8.18159 8.49303 9.01241 9.61719 11.09487 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.004088 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.003726 B = 6847.513415 C = 7117.955859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.148 4.148 5 C 0.128 3.872 6 O -0.495 6.495 7 C -0.091 4.091 8 C 0.095 3.905 9 N -0.531 5.531 10 C 0.062 3.938 11 C -0.116 4.116 12 C -0.111 4.111 13 C 0.057 3.943 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.068 3.932 24 C -0.102 4.102 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.398 0.602 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.830 10.012 7.711 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.129 4.129 4 C -0.166 4.166 5 C 0.082 3.918 6 O -0.306 6.306 7 C -0.092 4.092 8 C -0.033 4.033 9 N -0.256 5.256 10 C -0.066 4.066 11 C -0.154 4.154 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.059 4.059 24 C -0.120 4.120 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.256 0.744 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.545 10.416 7.983 18.155 hybrid contribution 0.259 -1.543 -0.319 1.597 sum -12.286 8.873 7.664 16.983 Atomic orbital electron populations 1.20744 0.91324 1.02624 1.02032 1.19833 0.95964 0.93047 1.01446 1.20817 0.93539 0.97411 1.01116 1.21401 0.94496 0.97788 1.02958 1.18249 0.83468 0.91268 0.98778 1.84679 1.15366 1.96275 1.34322 1.20224 0.93431 0.95342 1.00189 1.20928 0.97516 0.91898 0.92919 1.62003 1.16770 1.43042 1.03760 1.22052 0.92736 0.98287 0.93537 1.21661 0.98746 1.01170 0.93801 1.21655 0.95373 0.93594 1.04245 1.18646 0.92437 0.97149 0.87969 0.94790 1.21117 1.23597 1.13064 0.97637 0.92920 1.24921 0.96738 0.96505 0.95599 1.69877 1.41634 1.39142 1.02086 0.86696 0.81253 0.83165 0.77077 1.20410 1.21333 1.20293 1.22328 0.93449 0.88497 1.01601 1.20856 0.93050 0.97583 1.00557 0.91457 0.91728 0.91660 0.86133 0.85713 0.74445 0.89750 0.94881 0.96066 0.92351 0.92267 0.93671 0.89180 0.95222 0.93027 0.92122 0.96351 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.10 -1.16 5.88 -104.60 -0.62 -1.78 16 3 C -0.11 -1.23 9.69 -39.61 -0.38 -1.61 16 4 C -0.15 -1.83 9.99 -39.43 -0.39 -2.22 16 5 C 0.13 1.83 6.68 -39.22 -0.26 1.57 16 6 O -0.50 -7.28 12.83 -19.43 -0.25 -7.53 16 7 C -0.09 -1.32 4.43 -104.47 -0.46 -1.78 16 8 C 0.10 1.50 4.71 -4.97 -0.02 1.48 16 9 N -0.53 -9.63 4.65 -236.11 -1.10 -10.73 16 10 C 0.06 1.09 5.30 -3.84 -0.02 1.07 16 11 C -0.12 -2.26 6.09 -26.65 -0.16 -2.43 16 12 C -0.11 -2.60 5.03 -26.61 -0.13 -2.74 16 13 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.22 11.36 55.43 0.63 -24.59 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.07 1.43 4.68 -3.83 -0.02 1.42 16 24 C -0.10 -1.30 8.60 -39.61 -0.34 -1.64 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.40 5.06 9.06 45.56 0.41 5.47 16 31 H 0.08 1.37 7.84 -51.93 -0.41 0.97 16 32 H 0.03 0.50 7.93 -51.93 -0.41 0.09 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.06 1.28 8.02 -51.93 -0.42 0.86 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.12 1.40 8.00 -52.48 -0.42 0.98 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -28.85 335.82 -9.82 -38.66 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.09 Total: 3.65 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -3.05 Total: -20.74 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.47 Total: -35.32 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.25 Total: -7.53 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.85 -9.82 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds