Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.94156 * 2 1 4 4 C 1.38125 * 120.05352 * 179.97438 * 3 2 1 5 5 C 1.38758 * 119.94246 * 359.76994 * 4 3 2 6 6 O 1.35902 * 120.05469 * 180.27493 * 5 4 3 7 7 C 1.38704 * 119.88676 * 0.48286 * 5 4 3 8 8 C 1.50706 * 120.02710 * 179.79580 * 7 5 4 9 9 N 1.46902 * 109.46577 * 284.72146 * 8 7 5 10 10 C 1.46842 * 111.00276 * 294.21004 * 9 8 7 11 11 C 1.53037 * 109.52367 * 174.16333 * 10 9 8 12 12 C 1.53120 * 109.27865 * 59.17943 * 11 10 9 13 13 C 1.53120 * 109.16082 * 302.34553 * 12 11 10 14 14 H 1.08997 * 109.50175 * 297.71372 * 13 12 11 15 15 C 1.50703 * 109.50362 * 177.59655 * 13 12 11 16 16 H 1.08002 * 119.99823 * 240.19601 * 15 13 12 17 17 C 1.37879 * 119.99862 * 60.19530 * 15 13 12 18 18 N 1.31508 * 120.00048 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99534 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47380 * 60.00234 * 19 17 15 21 21 H 1.48507 * 109.46922 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47389 * 299.99832 * 19 17 15 23 23 C 1.46850 * 110.99680 * 170.00071 * 9 8 7 24 24 C 1.38163 * 119.94742 * 359.51489 * 7 5 4 25 25 H 1.09000 * 109.47193 * 269.97626 * 1 2 3 26 26 H 1.09001 * 109.47058 * 29.97734 * 1 2 3 27 27 H 1.09003 * 109.47314 * 149.97662 * 1 2 3 28 28 H 1.07998 * 119.97582 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.03031 * 180.02562 * 4 3 2 30 30 H 0.96696 * 114.00021 * 270.20722 * 6 5 4 31 31 H 1.09000 * 109.47318 * 44.71654 * 8 7 5 32 32 H 1.09000 * 109.47161 * 164.72284 * 8 7 5 33 33 H 1.09005 * 109.46184 * 294.17602 * 10 9 8 34 34 H 1.08998 * 109.46697 * 54.14510 * 10 9 8 35 35 H 1.08996 * 109.50638 * 299.23489 * 11 10 9 36 36 H 1.08999 * 109.53439 * 179.13672 * 11 10 9 37 37 H 1.08997 * 109.52404 * 182.44177 * 12 11 10 38 38 H 1.08999 * 109.57857 * 62.28191 * 12 11 10 39 39 H 0.96998 * 119.99940 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46046 * 305.85403 * 23 9 8 41 41 H 1.08998 * 109.46430 * 65.81938 * 23 9 8 42 42 H 1.08006 * 119.97574 * 180.25353 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0059 6 8 5.6324 0.0000 0.0121 7 6 3.5787 -1.2005 0.0006 8 6 4.3303 -2.5068 0.0017 9 7 4.8857 -2.7532 -1.3357 10 6 3.8157 -2.9605 -2.3199 11 6 4.4230 -3.0688 -3.7204 12 6 5.4081 -4.2405 -3.7552 13 6 6.4847 -4.0238 -2.6882 14 1 7.0423 -3.1147 -2.9133 15 6 7.4249 -5.2016 -2.6757 16 1 7.5360 -5.7943 -1.7797 17 6 8.1433 -5.5223 -3.8080 18 7 8.0084 -4.8001 -4.8988 19 14 9.3092 -6.9817 -3.7921 20 1 8.5482 -8.2199 -3.4874 21 1 9.9564 -7.1126 -5.1223 22 1 10.3503 -6.7723 -2.7541 23 6 5.8176 -3.8880 -1.3176 24 6 2.1971 -1.1979 0.0001 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6559 2.1328 0.0004 29 1 4.1171 2.1370 0.0010 30 1 6.0297 0.0015 -0.8695 31 1 5.1411 -2.4589 0.7286 32 1 3.6510 -3.3166 0.2680 33 1 3.2791 -3.8798 -2.0847 34 1 3.1245 -2.1184 -2.2879 35 1 4.9481 -2.1446 -3.9618 36 1 3.6304 -3.2380 -4.4493 37 1 5.8753 -4.2946 -4.7384 38 1 4.8767 -5.1705 -3.5528 39 1 8.5135 -5.0260 -5.6955 40 1 6.5805 -3.7192 -0.5576 41 1 5.2717 -4.8027 -1.0871 42 1 1.6556 -2.1325 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -49.928511 kcal Electronic energy + Delta-G solvation = -21586.122573 eV Core-core repulsion = 18529.483742 eV Total energy + Delta-G solvation = -3056.638831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03701 -39.48869 -37.69179 -35.80716 -33.97975 -32.49777 -32.01689 -31.44618 -27.51132 -26.90840 -26.76290 -23.81256 -23.22467 -23.05459 -21.28584 -20.35957 -19.06035 -18.38312 -17.02730 -16.78316 -16.67733 -16.19995 -15.91116 -15.52663 -14.98694 -14.81223 -14.64965 -14.41467 -14.33652 -14.11626 -13.66639 -13.42083 -13.36339 -12.97714 -12.82474 -12.66153 -12.57791 -12.43677 -12.30886 -12.08884 -11.83833 -11.71802 -11.42433 -11.22040 -10.86123 -10.67330 -10.36973 -9.77525 -9.25169 -9.13462 -8.07320 -6.21189 0.34867 0.41907 1.42124 1.43159 1.50735 2.43141 2.64664 3.19589 3.20635 3.52936 3.79753 3.91726 4.07325 4.18820 4.23084 4.35223 4.39238 4.49903 4.57810 4.62508 4.67356 4.76784 4.82344 4.88953 4.89578 4.95451 4.98242 5.08875 5.16219 5.17927 5.27190 5.37407 5.42323 5.51967 5.63432 5.65258 5.69082 5.96043 6.00126 6.12746 6.20940 6.31912 6.46480 6.90749 6.91830 7.46507 8.97061 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.004088 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.003726 B = 6847.513415 C = 7117.955859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.107 4.107 4 C -0.152 4.152 5 C 0.103 3.897 6 O -0.509 6.509 7 C -0.109 4.109 8 C 0.102 3.898 9 N -0.534 5.534 10 C 0.070 3.930 11 C -0.108 4.108 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.000 1.000 15 C -0.538 4.538 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.083 3.917 24 C -0.109 4.109 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.024 0.976 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.055 0.945 41 H 0.014 0.986 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.852 10.693 8.392 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.125 4.125 4 C -0.171 4.171 5 C 0.058 3.942 6 O -0.321 6.321 7 C -0.110 4.110 8 C -0.026 4.026 9 N -0.258 5.258 10 C -0.058 4.058 11 C -0.146 4.146 12 C -0.141 4.141 13 C 0.037 3.963 14 H 0.018 0.982 15 C -0.577 4.577 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.045 4.045 24 C -0.127 4.127 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.168 0.832 29 H 0.156 0.844 30 H 0.259 0.741 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.579 11.105 8.677 20.277 hybrid contribution 0.846 -1.684 -0.516 1.954 sum -13.734 9.421 8.162 18.547 Atomic orbital electron populations 1.20806 0.89007 1.03665 1.03115 1.20209 0.97655 0.92474 0.99826 1.21201 0.93092 0.98710 0.99519 1.21614 0.95320 0.97593 1.02555 1.18522 0.83257 0.92170 1.00214 1.84662 1.16163 1.96406 1.34853 1.20140 0.94201 0.94385 1.02230 1.20850 0.97416 0.93298 0.91006 1.61912 1.17098 1.41300 1.05501 1.21986 0.92528 0.99311 0.91956 1.21565 0.98326 0.98762 0.95955 1.21456 0.95714 0.95016 1.01915 1.18556 0.92524 0.94723 0.90485 0.98208 1.21496 1.24554 1.13947 0.97690 0.93204 1.25682 0.98262 0.99074 0.95252 1.70018 1.42313 1.40495 1.02504 0.85704 0.79262 0.80026 0.77195 1.19751 1.20886 1.19753 1.21985 0.93888 0.89528 0.99085 1.21032 0.92344 0.98841 1.00503 0.90241 0.90216 0.91174 0.83237 0.84399 0.74116 0.90837 0.94078 0.95747 0.90201 0.93085 0.91423 0.92356 0.96025 0.93063 0.92644 0.96784 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.10 -1.98 5.88 -19.85 -0.12 -2.09 16 3 C -0.11 -2.04 9.69 22.25 0.22 -1.83 16 4 C -0.15 -3.48 9.99 22.37 0.22 -3.26 16 5 C 0.10 2.88 6.68 22.51 0.15 3.03 16 6 O -0.51 -15.13 12.83 -92.45 -1.19 -16.31 16 7 C -0.11 -3.02 4.43 -19.77 -0.09 -3.10 16 8 C 0.10 3.16 4.71 85.56 0.40 3.57 16 9 N -0.53 -19.28 4.65 -900.92 -4.19 -23.47 16 10 C 0.07 2.38 5.30 86.33 0.46 2.84 16 11 C -0.11 -4.18 6.09 30.65 0.19 -3.99 16 12 C -0.10 -4.95 5.03 30.67 0.15 -4.80 16 13 C 0.06 2.86 2.26 -11.49 -0.03 2.84 16 14 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 15 C -0.54 -30.16 8.56 25.60 0.22 -29.94 16 16 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 17 C 0.02 0.91 5.30 84.66 0.45 1.36 16 18 N -0.91 -53.23 11.36 21.45 0.24 -52.99 16 19 Si 0.95 44.02 29.54 68.60 2.03 46.04 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.08 3.55 4.68 86.32 0.40 3.96 16 24 C -0.11 -2.52 8.60 22.25 0.19 -2.33 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 27 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.40 10.56 9.06 -74.06 -0.67 9.89 16 31 H 0.07 2.42 7.84 -2.39 -0.02 2.40 16 32 H 0.04 1.21 7.93 -2.39 -0.02 1.19 16 33 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 2.43 6.55 -2.39 -0.02 2.41 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 3.18 6.17 -2.39 -0.01 3.16 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.06 2.40 8.02 -2.39 -0.02 2.38 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.13 2.69 8.00 -2.91 -0.02 2.66 16 Total: -1.00 -62.88 335.82 0.76 -62.12 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.32 Total: 19.05 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 3.54 Total: -34.45 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -3.94 Total: -76.45 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.19 Total: -16.31 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -62.88 0.76 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.194 kcal (2) G-P(sol) polarization free energy of solvation -62.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds