Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.94069 * 2 1 4 4 C 1.38119 * 120.05321 * 180.02562 * 3 2 1 5 5 C 1.38752 * 119.94359 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05472 * 179.97438 * 5 4 3 7 7 C 1.38713 * 119.89198 * 359.97438 * 5 4 3 8 8 C 1.50694 * 120.02981 * 179.97438 * 7 5 4 9 9 N 1.46896 * 109.47516 * 75.86854 * 8 7 5 10 10 C 1.46847 * 110.99560 * 75.49420 * 9 8 7 11 11 C 1.53045 * 109.52416 * 185.84480 * 10 9 8 12 12 C 1.53126 * 109.27226 * 300.81651 * 11 10 9 13 13 C 1.53117 * 109.16120 * 57.65459 * 12 11 10 14 14 H 1.09004 * 109.50410 * 62.32088 * 13 12 11 15 15 C 1.50700 * 109.50496 * 182.40429 * 13 12 11 16 16 H 1.07993 * 120.00150 * 120.00064 * 15 13 12 17 17 C 1.37886 * 119.99694 * 299.99809 * 15 13 12 18 18 N 1.31512 * 119.99659 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99987 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47078 * 89.99631 * 19 17 15 21 21 H 1.48497 * 109.47429 * 209.99684 * 19 17 15 22 22 H 1.48501 * 109.47169 * 330.00116 * 19 17 15 23 23 C 1.46847 * 111.00149 * 199.70046 * 9 8 7 24 24 C 1.38160 * 119.93826 * 0.25453 * 7 5 4 25 25 H 1.08997 * 109.46973 * 90.00445 * 1 2 3 26 26 H 1.09001 * 109.46938 * 210.00182 * 1 2 3 27 27 H 1.08996 * 109.47232 * 330.00045 * 1 2 3 28 28 H 1.07995 * 119.97056 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.03274 * 179.97438 * 4 3 2 30 30 H 0.96707 * 113.99514 * 275.03853 * 6 5 4 31 31 H 1.09004 * 109.47305 * 315.86671 * 8 7 5 32 32 H 1.09003 * 109.47124 * 195.87582 * 8 7 5 33 33 H 1.09000 * 109.47079 * 65.82485 * 10 9 8 34 34 H 1.09007 * 109.46429 * 305.85229 * 10 9 8 35 35 H 1.09000 * 109.50511 * 60.75576 * 11 10 9 36 36 H 1.08991 * 109.50322 * 180.88143 * 11 10 9 37 37 H 1.09001 * 109.52084 * 177.55736 * 12 11 10 38 38 H 1.08994 * 109.52287 * 297.68352 * 12 11 10 39 39 H 0.97004 * 119.99752 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.46191 * 54.14786 * 23 9 8 41 41 H 1.09002 * 109.46522 * 294.17277 * 23 9 8 42 42 H 1.08007 * 119.96858 * 179.74617 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6324 0.0001 -0.0016 7 6 3.5788 -1.2006 0.0005 8 6 4.3304 -2.5067 0.0000 9 7 4.8692 -2.7622 1.3424 10 6 3.8099 -3.2011 2.2598 11 6 4.3762 -3.3169 3.6769 12 6 5.5293 -4.3245 3.6796 13 6 6.5967 -3.8694 2.6806 14 1 6.9985 -2.9050 2.9914 15 6 7.7080 -4.8862 2.6336 16 1 7.9437 -5.3861 1.7058 17 6 8.4239 -5.1781 3.7753 18 7 9.3941 -6.0651 3.7342 19 14 8.0158 -4.3139 5.3802 20 1 6.9942 -5.0985 6.1191 21 1 9.2442 -4.1984 6.2066 22 1 7.4844 -2.9577 5.0910 23 6 5.9660 -3.7374 1.2924 24 6 2.1972 -1.1978 -0.0037 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6559 2.1328 -0.0004 29 1 4.1172 2.1371 -0.0010 30 1 6.0250 0.0773 -0.8820 31 1 5.1501 -2.4539 -0.7166 32 1 3.6545 -3.3147 -0.2802 33 1 3.4311 -4.1717 1.9397 34 1 2.9980 -2.4738 2.2517 35 1 4.7427 -2.3436 4.0031 36 1 3.5937 -3.6577 4.3548 37 1 5.9639 -4.3780 4.6778 38 1 5.1551 -5.3070 3.3921 39 1 9.8975 -6.2707 4.5375 40 1 6.7200 -3.3998 0.5815 41 1 5.5771 -4.7056 0.9768 42 1 1.6558 -2.1324 -0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -21.922813 kcal Electronic energy + Delta-G solvation = -21645.084287 eV Core-core repulsion = 18589.659874 eV Total energy + Delta-G solvation = -3055.424413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03549 -38.17589 -36.81142 -34.22691 -32.36125 -31.67593 -30.84262 -30.17618 -26.62635 -25.84758 -24.86300 -22.70989 -22.13741 -21.36746 -20.17882 -18.78676 -18.18132 -16.67174 -16.05810 -15.72707 -15.32834 -15.09726 -14.24420 -14.18408 -13.89275 -13.63665 -13.53043 -13.44020 -13.04210 -12.74324 -12.65715 -12.22523 -12.13452 -11.75307 -11.68411 -11.63192 -11.08441 -11.02611 -10.98543 -10.47181 -10.29052 -10.00365 -9.89302 -9.62312 -9.06652 -8.86563 -8.85228 -8.45799 -8.33420 -7.70574 -6.01797 -4.00243 1.24435 1.30726 3.33470 3.44782 3.49900 3.56203 4.31479 4.48415 4.51099 4.75431 4.79725 4.87849 5.20122 5.20860 5.30559 5.41649 5.46210 5.52367 5.60247 5.62563 5.67516 5.75598 5.89732 5.96621 6.03833 6.06423 6.21116 6.27752 6.35704 6.39931 6.48689 6.53885 6.59479 6.68454 6.83542 6.88605 6.91944 7.27778 7.49395 7.68480 7.74303 7.83901 7.94524 8.57993 9.01477 9.61708 11.11520 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.004508 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.976766 B = 6210.237448 C = 6451.069178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.110 4.110 4 C -0.150 4.150 5 C 0.127 3.873 6 O -0.481 6.481 7 C -0.089 4.089 8 C 0.100 3.900 9 N -0.528 5.528 10 C 0.064 3.936 11 C -0.119 4.119 12 C -0.122 4.122 13 C 0.021 3.979 14 H 0.036 0.964 15 C -0.512 4.512 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.904 5.904 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.263 1.263 23 C 0.080 3.920 24 C -0.102 4.102 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.382 0.618 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.720 12.830 -9.108 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.169 4.169 5 C 0.081 3.919 6 O -0.289 6.289 7 C -0.090 4.090 8 C -0.028 4.028 9 N -0.252 5.252 10 C -0.064 4.064 11 C -0.157 4.157 12 C -0.159 4.159 13 C 0.001 3.999 14 H 0.054 0.946 15 C -0.550 4.550 16 H 0.090 0.910 17 C -0.131 4.131 18 N -0.542 5.542 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.188 1.188 23 C -0.046 4.046 24 C -0.120 4.120 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.237 0.763 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.438 13.101 -8.219 22.570 hybrid contribution -0.356 -0.352 0.224 0.549 sum -16.794 12.749 -7.995 22.550 Atomic orbital electron populations 1.20747 0.91300 1.02662 1.02049 1.19844 0.95980 0.93052 1.01345 1.20823 0.93563 0.97441 1.01043 1.21438 0.94585 0.97821 1.03014 1.18267 0.83296 0.91334 0.98956 1.84988 1.15387 1.95826 1.32730 1.20222 0.93410 0.95266 1.00144 1.20825 0.97451 0.92089 0.92430 1.61917 1.09765 1.46945 1.06577 1.22003 0.93392 0.97418 0.93592 1.21641 0.98303 1.00680 0.95034 1.22018 0.96030 0.97716 1.00143 1.19154 0.92968 0.97504 0.90240 0.94566 1.21012 1.14573 1.22079 0.97383 0.91006 1.24973 0.94611 0.94628 0.98873 1.69903 1.21947 1.33337 1.29054 0.86830 0.76437 0.81215 0.83713 1.20784 1.22674 1.18762 1.22085 0.91235 0.91177 1.00140 1.20847 0.93026 0.97588 1.00573 0.91434 0.91639 0.91715 0.86136 0.85707 0.76267 0.90232 0.94540 0.95635 0.92022 0.91882 0.92962 0.93642 0.92647 0.92757 0.91460 0.95809 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.10 -1.09 5.88 -104.60 -0.62 -1.70 16 3 C -0.11 -1.16 9.69 -39.61 -0.38 -1.55 16 4 C -0.15 -1.75 9.99 -39.43 -0.39 -2.15 16 5 C 0.13 1.72 6.68 -39.22 -0.26 1.45 16 6 O -0.48 -6.64 12.82 -19.43 -0.25 -6.89 16 7 C -0.09 -1.22 4.83 -104.48 -0.50 -1.72 16 8 C 0.10 1.48 4.76 -4.98 -0.02 1.46 16 9 N -0.53 -9.60 4.58 -236.11 -1.08 -10.68 16 10 C 0.06 1.10 5.29 -3.83 -0.02 1.08 16 11 C -0.12 -2.24 6.09 -26.64 -0.16 -2.40 16 12 C -0.12 -2.73 4.73 -26.61 -0.13 -2.86 16 13 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 14 H 0.04 0.95 7.21 -51.93 -0.37 0.57 16 15 C -0.51 -14.63 9.15 -34.44 -0.31 -14.95 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 19 Si 0.89 22.77 24.35 -169.99 -4.14 18.63 16 20 H -0.28 -7.00 6.89 56.52 0.39 -6.61 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.26 -6.59 6.53 56.52 0.37 -6.22 16 23 C 0.08 1.68 4.65 -3.83 -0.02 1.66 16 24 C -0.10 -1.21 8.71 -39.61 -0.34 -1.56 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.38 3.35 9.06 45.56 0.41 3.76 16 31 H 0.08 1.13 7.64 -51.93 -0.40 0.74 16 32 H 0.04 0.51 7.82 -51.93 -0.41 0.10 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.98 6.99 -51.93 -0.36 0.61 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.08 3.34 -51.93 -0.17 0.91 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.12 1.29 8.01 -52.48 -0.42 0.87 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -32.77 329.41 -8.76 -41.53 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.95 Total: 1.24 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -3.08 Total: -21.44 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.31 Total: -38.04 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.25 Total: -6.89 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.77 -8.76 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.604 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds