Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.94069 * 2 1 4 4 C 1.38119 * 120.05321 * 180.02562 * 3 2 1 5 5 C 1.38752 * 119.94359 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05472 * 179.97438 * 5 4 3 7 7 C 1.38713 * 119.89198 * 359.97438 * 5 4 3 8 8 C 1.50694 * 120.02981 * 179.97438 * 7 5 4 9 9 N 1.46896 * 109.47516 * 75.86854 * 8 7 5 10 10 C 1.46847 * 110.99560 * 75.49420 * 9 8 7 11 11 C 1.53045 * 109.52416 * 185.84480 * 10 9 8 12 12 C 1.53126 * 109.27226 * 300.81651 * 11 10 9 13 13 C 1.53117 * 109.16120 * 57.65459 * 12 11 10 14 14 H 1.09004 * 109.50410 * 62.32088 * 13 12 11 15 15 C 1.50700 * 109.50496 * 182.40429 * 13 12 11 16 16 H 1.07993 * 120.00150 * 120.00064 * 15 13 12 17 17 C 1.37886 * 119.99694 * 299.99809 * 15 13 12 18 18 N 1.31512 * 119.99659 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99987 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47078 * 89.99631 * 19 17 15 21 21 H 1.48497 * 109.47429 * 209.99684 * 19 17 15 22 22 H 1.48501 * 109.47169 * 330.00116 * 19 17 15 23 23 C 1.46847 * 111.00149 * 199.70046 * 9 8 7 24 24 C 1.38160 * 119.93826 * 0.25453 * 7 5 4 25 25 H 1.08997 * 109.46973 * 90.00445 * 1 2 3 26 26 H 1.09001 * 109.46938 * 210.00182 * 1 2 3 27 27 H 1.08996 * 109.47232 * 330.00045 * 1 2 3 28 28 H 1.07995 * 119.97056 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.03274 * 179.97438 * 4 3 2 30 30 H 0.96707 * 113.99514 * 275.03853 * 6 5 4 31 31 H 1.09004 * 109.47305 * 315.86671 * 8 7 5 32 32 H 1.09003 * 109.47124 * 195.87582 * 8 7 5 33 33 H 1.09000 * 109.47079 * 65.82485 * 10 9 8 34 34 H 1.09007 * 109.46429 * 305.85229 * 10 9 8 35 35 H 1.09000 * 109.50511 * 60.75576 * 11 10 9 36 36 H 1.08991 * 109.50322 * 180.88143 * 11 10 9 37 37 H 1.09001 * 109.52084 * 177.55736 * 12 11 10 38 38 H 1.08994 * 109.52287 * 297.68352 * 12 11 10 39 39 H 0.97004 * 119.99752 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.46191 * 54.14786 * 23 9 8 41 41 H 1.09002 * 109.46522 * 294.17277 * 23 9 8 42 42 H 1.08007 * 119.96858 * 179.74617 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6324 0.0001 -0.0016 7 6 3.5788 -1.2006 0.0005 8 6 4.3304 -2.5067 0.0000 9 7 4.8692 -2.7622 1.3424 10 6 3.8099 -3.2011 2.2598 11 6 4.3762 -3.3169 3.6769 12 6 5.5293 -4.3245 3.6796 13 6 6.5967 -3.8694 2.6806 14 1 6.9985 -2.9050 2.9914 15 6 7.7080 -4.8862 2.6336 16 1 7.9437 -5.3861 1.7058 17 6 8.4239 -5.1781 3.7753 18 7 9.3941 -6.0651 3.7342 19 14 8.0158 -4.3139 5.3802 20 1 6.9942 -5.0985 6.1191 21 1 9.2442 -4.1984 6.2066 22 1 7.4844 -2.9577 5.0910 23 6 5.9660 -3.7374 1.2924 24 6 2.1972 -1.1978 -0.0037 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6559 2.1328 -0.0004 29 1 4.1172 2.1371 -0.0010 30 1 6.0250 0.0773 -0.8820 31 1 5.1501 -2.4539 -0.7166 32 1 3.6545 -3.3147 -0.2802 33 1 3.4311 -4.1717 1.9397 34 1 2.9980 -2.4738 2.2517 35 1 4.7427 -2.3436 4.0031 36 1 3.5937 -3.6577 4.3548 37 1 5.9639 -4.3780 4.6778 38 1 5.1551 -5.3070 3.3921 39 1 9.8975 -6.2707 4.5375 40 1 6.7200 -3.3998 0.5815 41 1 5.5771 -4.7056 0.9768 42 1 1.6558 -2.1324 -0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -44.664510 kcal Electronic energy + Delta-G solvation = -21646.070441 eV Core-core repulsion = 18589.659874 eV Total energy + Delta-G solvation = -3056.410567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01157 -39.65832 -37.72588 -35.85311 -34.21204 -32.53297 -32.07356 -31.90736 -27.61491 -26.94033 -26.75642 -24.09970 -23.09925 -23.01711 -21.26533 -20.49383 -19.12819 -18.82249 -17.28364 -16.95072 -16.44510 -16.22202 -15.91720 -15.53231 -15.30527 -14.91471 -14.80650 -14.66025 -14.27051 -14.23777 -13.77088 -13.68439 -13.38247 -13.02485 -12.89896 -12.69304 -12.59655 -12.40753 -12.29186 -12.00104 -11.90519 -11.75538 -11.46817 -11.24326 -11.01412 -10.80379 -10.62251 -9.76485 -9.21021 -9.11695 -8.31195 -6.33938 0.37389 0.43037 1.27983 1.35202 1.46587 2.32126 2.66127 3.04739 3.20451 3.47161 3.82300 3.92408 4.02094 4.07930 4.10532 4.24745 4.32460 4.43940 4.49162 4.57128 4.60691 4.66931 4.77013 4.79120 4.83316 4.90141 4.94603 4.97952 5.03146 5.12107 5.17195 5.22038 5.28880 5.42962 5.44346 5.63019 5.64705 5.70101 5.73003 6.02734 6.18443 6.29484 6.36935 6.73029 7.01264 7.31698 8.85671 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.004508 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.976766 B = 6210.237448 C = 6451.069178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.109 4.109 4 C -0.157 4.157 5 C 0.107 3.893 6 O -0.504 6.504 7 C -0.107 4.107 8 C 0.103 3.897 9 N -0.537 5.537 10 C 0.066 3.934 11 C -0.113 4.113 12 C -0.120 4.120 13 C 0.021 3.979 14 H 0.018 0.982 15 C -0.517 4.517 16 H 0.035 0.965 17 C 0.016 3.984 18 N -0.949 5.949 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.298 1.298 22 H -0.255 1.255 23 C 0.093 3.907 24 C -0.107 4.107 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.266 0.734 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.909 14.654 -8.683 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.175 4.175 5 C 0.062 3.938 6 O -0.316 6.316 7 C -0.109 4.109 8 C -0.024 4.024 9 N -0.262 5.262 10 C -0.062 4.062 11 C -0.151 4.151 12 C -0.158 4.158 13 C 0.002 3.998 14 H 0.036 0.964 15 C -0.556 4.556 16 H 0.053 0.947 17 C -0.181 4.181 18 N -0.590 5.590 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.226 1.226 22 H -0.179 1.179 23 C -0.035 4.035 24 C -0.125 4.125 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.256 0.744 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.650 14.937 -7.820 25.891 hybrid contribution 0.638 -0.898 -0.040 1.102 sum -19.012 14.039 -7.860 24.906 Atomic orbital electron populations 1.20801 0.89114 1.03559 1.03132 1.20201 0.97590 0.92541 1.00003 1.21186 0.93193 0.98679 0.99609 1.21631 0.95348 0.97669 1.02894 1.18511 0.83162 0.92143 1.00002 1.84926 1.16130 1.95959 1.34559 1.20149 0.94153 0.94379 1.02178 1.20821 0.97723 0.93457 0.90440 1.61848 1.09857 1.45599 1.08867 1.22026 0.93346 0.98484 0.92295 1.21612 0.97614 0.98947 0.96944 1.21907 0.96703 0.98750 0.98434 1.19047 0.92631 0.94984 0.93126 0.96381 1.21324 1.15928 1.22389 0.95957 0.94673 1.25792 0.94449 0.95345 1.02562 1.70040 1.23425 1.35253 1.30246 0.85819 0.76523 0.80504 0.79428 1.19095 1.22566 1.17924 1.21758 0.92227 0.91811 0.97662 1.21029 0.92361 0.98792 1.00338 0.90168 0.91153 0.90470 0.83525 0.84552 0.74396 0.90536 0.93387 0.94858 0.89915 0.92694 0.89894 0.94813 0.92943 0.92538 0.92401 0.96344 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.57 16 2 C -0.10 -1.86 5.88 -19.85 -0.12 -1.98 16 3 C -0.11 -1.94 9.69 22.25 0.22 -1.73 16 4 C -0.16 -3.35 9.99 22.36 0.22 -3.13 16 5 C 0.11 2.76 6.68 22.51 0.15 2.91 16 6 O -0.50 -13.82 12.82 -92.45 -1.19 -15.00 16 7 C -0.11 -2.75 4.83 -19.77 -0.10 -2.85 16 8 C 0.10 2.94 4.76 85.56 0.41 3.34 16 9 N -0.54 -18.99 4.58 -900.91 -4.12 -23.11 16 10 C 0.07 2.11 5.29 86.33 0.46 2.57 16 11 C -0.11 -3.99 6.09 30.65 0.19 -3.80 16 12 C -0.12 -5.28 4.73 30.68 0.15 -5.14 16 13 C 0.02 1.05 1.85 -11.49 -0.02 1.03 16 14 H 0.02 0.95 7.21 -2.38 -0.02 0.94 16 15 C -0.52 -30.59 9.15 25.60 0.23 -30.35 16 16 H 0.03 2.26 7.99 -2.91 -0.02 2.24 16 17 C 0.02 0.93 5.45 84.66 0.46 1.39 16 18 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 19 Si 0.95 47.37 24.35 68.60 1.67 49.04 16 20 H -0.26 -12.46 6.89 99.48 0.69 -11.78 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 22 H -0.25 -12.27 6.53 99.48 0.65 -11.62 16 23 C 0.09 3.92 4.65 86.33 0.40 4.33 16 24 C -0.11 -2.26 8.71 22.25 0.19 -2.06 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 28 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.40 7.04 9.06 -74.05 -0.67 6.37 16 31 H 0.08 2.18 7.64 -2.39 -0.02 2.16 16 32 H 0.05 1.25 7.82 -2.39 -0.02 1.23 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 2.33 6.99 -2.38 -0.02 2.32 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.03 1.55 3.34 -2.39 -0.01 1.54 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.06 2.49 7.93 -2.39 -0.02 2.48 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.13 2.41 8.01 -2.91 -0.02 2.39 16 Total: -1.00 -71.73 329.41 0.47 -71.26 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.25 Total: 14.34 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.55 Total: -36.03 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -3.82 Total: -83.61 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.19 Total: -15.00 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.67 Total: 49.04 kcal Total: -71.73 0.47 -71.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.594 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds