Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38354 * 119.91382 * 2 1 4 4 C 1.38038 * 120.07944 * 180.02562 * 3 2 1 5 5 C 1.39049 * 119.91896 * 0.02562 * 4 3 2 6 6 N 1.39530 * 120.08182 * 179.97438 * 5 4 3 7 7 C 1.46508 * 119.99485 * 95.44032 * 6 5 4 8 8 C 1.53007 * 109.46486 * 275.69691 * 7 6 5 9 9 C 1.52995 * 109.46687 * 174.45195 * 8 7 6 10 10 C 1.53007 * 109.46923 * 294.44711 * 8 7 6 11 11 C 1.34771 * 120.00676 * 275.43032 * 6 5 4 12 12 O 1.21751 * 119.99574 * 0.02562 * 11 6 5 13 13 C 1.46161 * 120.00597 * 180.02562 * 11 6 5 14 14 H 1.08009 * 119.99686 * 0.02562 * 13 11 6 15 15 C 1.40123 * 120.00354 * 179.72653 * 13 11 6 16 16 N 1.30637 * 119.99807 * 0.28002 * 15 13 11 17 17 Si 1.86798 * 120.00001 * 180.27537 * 15 13 11 18 18 H 1.48500 * 109.47356 * 60.00231 * 17 15 13 19 19 H 1.48503 * 109.46955 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47509 * 300.00091 * 17 15 13 21 21 C 1.39012 * 119.83141 * 0.25380 * 5 4 3 22 22 C 1.50704 * 120.03942 * 179.75035 * 21 5 4 23 23 C 1.38081 * 119.91733 * 359.46965 * 21 5 4 24 24 H 1.08995 * 109.47037 * 90.00334 * 1 2 3 25 25 H 1.09000 * 109.46501 * 210.00043 * 1 2 3 26 26 H 1.08998 * 109.46792 * 329.99846 * 1 2 3 27 27 H 1.07998 * 119.95739 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.04111 * 179.97438 * 4 3 2 29 29 H 1.08993 * 109.47192 * 35.69646 * 7 6 5 30 30 H 1.09000 * 109.46769 * 155.69961 * 7 6 5 31 31 H 1.08990 * 109.47406 * 54.44983 * 8 7 6 32 32 H 1.09006 * 109.47639 * 59.99637 * 9 8 7 33 33 H 1.09007 * 109.47316 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47476 * 299.99925 * 9 8 7 35 35 H 1.08995 * 109.46691 * 60.00356 * 10 8 7 36 36 H 1.08994 * 109.46695 * 180.02562 * 10 8 7 37 37 H 1.08998 * 109.46730 * 300.00186 * 10 8 7 38 38 H 0.97002 * 119.99969 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47306 * 84.62850 * 22 21 5 40 40 H 1.09000 * 109.47021 * 204.62631 * 22 21 5 41 41 H 1.09004 * 109.47171 * 324.62463 * 22 21 5 42 42 H 1.07996 * 119.96076 * 180.27963 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5774 1.2032 -0.0005 5 6 4.2745 0.0000 -0.0016 6 7 5.6698 0.0001 -0.0027 7 6 6.4032 -0.1207 1.2598 8 6 6.5345 1.2594 1.9073 9 6 7.1768 1.1156 3.2884 10 6 7.4106 2.1540 1.0280 11 6 6.3428 0.1111 -1.1650 12 8 5.7333 0.2118 -2.2141 13 6 7.8045 0.1106 -1.1662 14 1 8.3452 0.0209 -0.2355 15 6 8.5042 0.2203 -2.3752 16 7 7.8502 0.3284 -3.5009 17 14 10.3722 0.2119 -2.3773 18 1 10.8622 -1.0627 -1.7936 19 1 10.8662 0.3404 -3.7718 20 1 10.8733 1.3518 -1.5681 21 6 3.5776 -1.2028 -0.0075 22 6 4.3284 -2.5095 -0.0144 23 6 2.1969 -1.1988 -0.0012 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6550 2.1333 0.0004 28 1 4.1154 2.1397 -0.0010 29 1 5.8626 -0.7873 1.9317 30 1 7.3958 -0.5270 1.0659 31 1 5.5464 1.7076 2.0110 32 1 8.1650 0.6673 3.1847 33 1 7.2700 2.0987 3.7500 34 1 6.5528 0.4782 3.9149 35 1 6.9530 2.2563 0.0440 36 1 7.5045 3.1369 1.4894 37 1 8.3987 1.7057 0.9243 38 1 8.3346 0.4040 -4.3379 39 1 4.5931 -2.7819 1.0073 40 1 3.6992 -3.2877 -0.4463 41 1 5.2358 -2.4042 -0.6091 42 1 1.6548 -2.1329 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846301791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = -27.553792 kcal Electronic energy + Delta-G solvation = -22230.947246 eV Core-core repulsion = 19175.278655 eV Total energy + Delta-G solvation = -3055.668591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.59344 -37.50536 -35.37946 -33.68260 -32.45724 -31.89377 -30.88007 -27.25400 -26.73455 -26.38661 -25.77363 -24.46184 -21.78673 -20.69389 -19.70352 -19.08035 -16.64610 -15.88176 -15.61633 -15.35621 -14.52863 -14.39989 -13.88393 -13.66706 -13.52186 -13.44607 -12.78865 -12.69116 -12.61416 -12.30577 -12.15883 -11.85464 -11.74243 -11.60627 -11.33510 -11.20543 -11.07583 -11.02761 -10.77768 -10.63026 -10.55589 -10.40216 -10.29048 -10.19264 -9.71469 -8.86470 -8.22243 -7.87748 -7.58310 -7.35673 -6.21435 -4.65458 1.87480 1.94608 3.13024 3.18998 3.19746 4.05280 4.24427 4.48049 4.53866 5.19212 5.25475 5.38173 5.44883 5.45597 5.59654 5.64909 5.74328 5.77715 5.80544 5.92718 5.96482 6.03446 6.11011 6.13644 6.17907 6.24789 6.33465 6.36206 6.45746 6.52051 6.54649 6.64161 6.75822 6.89122 6.92921 7.03719 7.20220 7.33049 7.39882 7.44115 7.66533 8.18798 8.48295 8.99660 9.36699 10.56273 10.74856 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.006466 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.692567 B = 4329.445310 C = 5061.878304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.124 4.124 4 C -0.110 4.110 5 C 0.182 3.818 6 N -0.605 5.605 7 C 0.134 3.866 8 C -0.113 4.113 9 C -0.142 4.142 10 C -0.137 4.137 11 C 0.561 3.439 12 O -0.568 6.568 13 C -0.535 4.535 14 H 0.075 0.925 15 C 0.088 3.912 16 N -0.765 5.765 17 Si 0.902 3.098 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.267 1.267 21 C -0.087 4.087 22 C -0.105 4.105 23 C -0.119 4.119 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 -0.828 10.637 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.129 4.129 5 C 0.091 3.909 6 N -0.339 5.339 7 C 0.011 3.989 8 C -0.133 4.133 9 C -0.200 4.200 10 C -0.194 4.194 11 C 0.368 3.632 12 O -0.449 6.449 13 C -0.572 4.572 14 H 0.093 0.907 15 C -0.132 4.132 16 N -0.394 5.394 17 Si 0.726 3.274 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.089 4.089 22 C -0.162 4.162 23 C -0.138 4.138 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.269 -0.764 9.807 11.664 hybrid contribution 0.957 0.127 -0.001 0.966 sum -5.312 -0.637 9.806 11.170 Atomic orbital electron populations 1.20697 0.91883 1.01940 1.01780 1.19745 0.95402 0.93233 1.02054 1.20776 0.93835 0.96998 1.02616 1.21447 0.93845 0.98075 0.99577 1.17475 0.85252 0.91274 0.96928 1.45776 1.01040 1.79412 1.07713 1.21371 0.97695 0.94914 0.84961 1.21547 0.99228 0.97887 0.94595 1.21775 1.00650 1.00950 0.96593 1.21831 1.00254 0.97031 1.00257 1.18242 0.88234 0.76418 0.80288 1.90663 1.69926 1.54115 1.30203 1.20912 0.89275 1.53342 0.93663 0.90680 1.25719 0.99573 0.92793 0.95114 1.69997 1.36502 1.34629 0.98250 0.86524 0.83477 0.79504 0.77873 1.19253 1.20619 1.19166 1.20240 0.93469 0.95492 0.99676 1.20640 1.00713 0.93295 1.01532 1.20673 0.93119 0.97041 1.02976 0.91721 0.92129 0.92098 0.86825 0.86533 0.93397 0.89378 0.92118 0.92689 0.93221 0.93360 0.91201 0.94885 0.92248 0.92051 0.92073 0.92574 0.90575 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.10 -1.65 5.89 -104.55 -0.62 -2.27 16 3 C -0.12 -2.10 9.69 -39.61 -0.38 -2.48 16 4 C -0.11 -2.18 9.80 -39.35 -0.39 -2.56 16 5 C 0.18 3.87 4.43 -83.77 -0.37 3.49 16 6 N -0.61 -13.47 1.41 -115.09 -0.16 -13.63 16 7 C 0.13 2.47 4.87 -4.03 -0.02 2.45 16 8 C -0.11 -1.86 3.10 -90.61 -0.28 -2.14 16 9 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 10 C -0.14 -2.49 7.79 37.16 0.29 -2.20 16 11 C 0.56 15.33 6.13 -13.08 -0.08 15.25 16 12 O -0.57 -18.20 14.99 5.14 0.08 -18.12 16 13 C -0.54 -14.16 7.10 -35.70 -0.25 -14.42 16 14 H 0.08 1.81 4.67 -52.48 -0.25 1.56 16 15 C 0.09 2.37 5.50 -17.35 -0.10 2.27 16 16 N -0.77 -22.44 11.82 55.55 0.66 -21.78 16 17 Si 0.90 19.57 29.56 -169.99 -5.02 14.55 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 C -0.09 -1.68 5.90 -104.39 -0.62 -2.30 16 22 C -0.11 -1.86 9.70 36.01 0.35 -1.51 16 23 C -0.12 -2.01 9.33 -39.61 -0.37 -2.38 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.09 1.68 5.78 -51.93 -0.30 1.38 16 31 H 0.06 1.03 7.96 -51.93 -0.41 0.61 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.54 6.34 -51.93 -0.33 1.21 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 1.10 7.02 -51.93 -0.36 0.74 16 38 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 41 H 0.08 1.60 7.38 -51.93 -0.38 1.21 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -32.39 340.31 -8.11 -40.50 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.65 Total: 4.59 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.13 Total: -11.23 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.49 Total: -35.41 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.08 Total: -18.12 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.39 -8.11 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846301791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.942 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds