Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38354 * 119.91382 * 2 1 4 4 C 1.38038 * 120.07944 * 180.02562 * 3 2 1 5 5 C 1.39049 * 119.91896 * 0.02562 * 4 3 2 6 6 N 1.39530 * 120.08182 * 179.97438 * 5 4 3 7 7 C 1.46508 * 119.99485 * 95.44032 * 6 5 4 8 8 C 1.53007 * 109.46486 * 275.69691 * 7 6 5 9 9 C 1.52995 * 109.46687 * 174.45195 * 8 7 6 10 10 C 1.53007 * 109.46923 * 294.44711 * 8 7 6 11 11 C 1.34771 * 120.00676 * 275.43032 * 6 5 4 12 12 O 1.21751 * 119.99574 * 0.02562 * 11 6 5 13 13 C 1.46161 * 120.00597 * 180.02562 * 11 6 5 14 14 H 1.08009 * 119.99686 * 0.02562 * 13 11 6 15 15 C 1.40123 * 120.00354 * 179.72653 * 13 11 6 16 16 N 1.30637 * 119.99807 * 0.28002 * 15 13 11 17 17 Si 1.86798 * 120.00001 * 180.27537 * 15 13 11 18 18 H 1.48500 * 109.47356 * 60.00231 * 17 15 13 19 19 H 1.48503 * 109.46955 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47509 * 300.00091 * 17 15 13 21 21 C 1.39012 * 119.83141 * 0.25380 * 5 4 3 22 22 C 1.50704 * 120.03942 * 179.75035 * 21 5 4 23 23 C 1.38081 * 119.91733 * 359.46965 * 21 5 4 24 24 H 1.08995 * 109.47037 * 90.00334 * 1 2 3 25 25 H 1.09000 * 109.46501 * 210.00043 * 1 2 3 26 26 H 1.08998 * 109.46792 * 329.99846 * 1 2 3 27 27 H 1.07998 * 119.95739 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.04111 * 179.97438 * 4 3 2 29 29 H 1.08993 * 109.47192 * 35.69646 * 7 6 5 30 30 H 1.09000 * 109.46769 * 155.69961 * 7 6 5 31 31 H 1.08990 * 109.47406 * 54.44983 * 8 7 6 32 32 H 1.09006 * 109.47639 * 59.99637 * 9 8 7 33 33 H 1.09007 * 109.47316 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47476 * 299.99925 * 9 8 7 35 35 H 1.08995 * 109.46691 * 60.00356 * 10 8 7 36 36 H 1.08994 * 109.46695 * 180.02562 * 10 8 7 37 37 H 1.08998 * 109.46730 * 300.00186 * 10 8 7 38 38 H 0.97002 * 119.99969 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47306 * 84.62850 * 22 21 5 40 40 H 1.09000 * 109.47021 * 204.62631 * 22 21 5 41 41 H 1.09004 * 109.47171 * 324.62463 * 22 21 5 42 42 H 1.07996 * 119.96076 * 180.27963 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5774 1.2032 -0.0005 5 6 4.2745 0.0000 -0.0016 6 7 5.6698 0.0001 -0.0027 7 6 6.4032 -0.1207 1.2598 8 6 6.5345 1.2594 1.9073 9 6 7.1768 1.1156 3.2884 10 6 7.4106 2.1540 1.0280 11 6 6.3428 0.1111 -1.1650 12 8 5.7333 0.2118 -2.2141 13 6 7.8045 0.1106 -1.1662 14 1 8.3452 0.0209 -0.2355 15 6 8.5042 0.2203 -2.3752 16 7 7.8502 0.3284 -3.5009 17 14 10.3722 0.2119 -2.3773 18 1 10.8622 -1.0627 -1.7936 19 1 10.8662 0.3404 -3.7718 20 1 10.8733 1.3518 -1.5681 21 6 3.5776 -1.2028 -0.0075 22 6 4.3284 -2.5095 -0.0144 23 6 2.1969 -1.1988 -0.0012 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6550 2.1333 0.0004 28 1 4.1154 2.1397 -0.0010 29 1 5.8626 -0.7873 1.9317 30 1 7.3958 -0.5270 1.0659 31 1 5.5464 1.7076 2.0110 32 1 8.1650 0.6673 3.1847 33 1 7.2700 2.0987 3.7500 34 1 6.5528 0.4782 3.9149 35 1 6.9530 2.2563 0.0440 36 1 7.5045 3.1369 1.4894 37 1 8.3987 1.7057 0.9243 38 1 8.3346 0.4040 -4.3379 39 1 4.5931 -2.7819 1.0073 40 1 3.6992 -3.2877 -0.4463 41 1 5.2358 -2.4042 -0.6091 42 1 1.6548 -2.1329 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846301791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = -45.106620 kcal Electronic energy + Delta-G solvation = -22231.708393 eV Core-core repulsion = 19175.278655 eV Total energy + Delta-G solvation = -3056.429738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15701 -39.12433 -37.13595 -35.22850 -34.42241 -33.41297 -32.28151 -28.97090 -28.07622 -27.81027 -27.29741 -26.02476 -23.27746 -22.29984 -21.15356 -20.63927 -18.49439 -17.69807 -17.39768 -16.81688 -16.14132 -15.86755 -15.41802 -15.11333 -14.93046 -14.75244 -14.35596 -14.05138 -14.02245 -13.80838 -13.57916 -13.33658 -13.20049 -13.07908 -12.87700 -12.72495 -12.61393 -12.44595 -12.23500 -12.18723 -12.14140 -12.00194 -11.75141 -11.67158 -11.30896 -10.88617 -9.79218 -9.62781 -9.31155 -9.07953 -8.25157 -6.77024 0.46048 0.52356 1.39013 1.41774 1.52423 2.23607 2.49360 2.81650 2.85202 3.65403 3.94629 4.02043 4.03703 4.07734 4.18973 4.31917 4.40713 4.56993 4.60216 4.69048 4.73261 4.76750 4.85639 4.87235 4.90948 4.93192 4.99368 5.04987 5.12838 5.17136 5.22624 5.29671 5.36737 5.37451 5.48769 5.54753 5.65064 5.71180 5.80801 5.85616 6.06575 6.20933 6.73467 6.91879 7.44040 8.53846 8.72448 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.006466 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.692567 B = 4329.445310 C = 5061.878304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.132 4.132 5 C 0.141 3.859 6 N -0.599 5.599 7 C 0.131 3.869 8 C -0.105 4.105 9 C -0.133 4.133 10 C -0.129 4.129 11 C 0.552 3.448 12 O -0.629 6.629 13 C -0.548 4.548 14 H 0.095 0.905 15 C 0.031 3.969 16 N -0.823 5.823 17 Si 0.983 3.017 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.253 1.253 21 C -0.107 4.107 22 C -0.097 4.097 23 C -0.120 4.120 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.271 0.729 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 -1.422 13.100 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.151 4.151 5 C 0.050 3.950 6 N -0.330 5.330 7 C 0.008 3.992 8 C -0.125 4.125 9 C -0.191 4.191 10 C -0.187 4.187 11 C 0.360 3.640 12 O -0.516 6.516 13 C -0.584 4.584 14 H 0.113 0.887 15 C -0.184 4.184 16 N -0.452 5.452 17 Si 0.803 3.197 18 H -0.176 1.176 19 H -0.204 1.204 20 H -0.176 1.176 21 C -0.109 4.109 22 C -0.154 4.154 23 C -0.138 4.138 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.861 -1.364 12.349 14.193 hybrid contribution 0.983 0.324 -0.716 1.259 sum -5.878 -1.040 11.633 13.075 Atomic orbital electron populations 1.20775 0.88362 1.03961 1.02874 1.20269 0.97863 0.92249 0.99386 1.21104 0.92668 0.98985 1.01687 1.21466 0.95401 0.97036 1.01241 1.17792 0.84708 0.92728 0.99740 1.45415 1.02003 1.78070 1.07562 1.21564 0.97038 0.96681 0.83875 1.21462 0.98896 0.95977 0.96153 1.21702 1.00836 1.02359 0.94181 1.21720 0.99764 0.98788 0.98378 1.18548 0.88949 0.75677 0.80804 1.90596 1.71177 1.56893 1.32899 1.21339 0.89484 1.52916 0.94697 0.88730 1.26907 1.05587 0.91556 0.94332 1.70197 1.39189 1.36595 0.99268 0.85273 0.75828 0.80445 0.78122 1.17639 1.20421 1.17649 1.20504 0.94927 0.95174 1.00276 1.20577 0.99067 0.93491 1.02238 1.21064 0.92131 0.98920 1.01664 0.90877 0.90007 0.90324 0.84223 0.88334 0.91329 0.90289 0.92774 0.92067 0.91711 0.91728 0.95885 0.92690 0.92679 0.91929 0.89844 0.90345 0.94886 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.01 71.24 0.71 -1.32 16 2 C -0.10 -2.87 5.89 -19.82 -0.12 -2.99 16 3 C -0.13 -4.19 9.69 22.25 0.22 -3.97 16 4 C -0.13 -5.44 9.80 22.42 0.22 -5.22 16 5 C 0.14 6.21 4.43 38.30 0.17 6.38 16 6 N -0.60 -27.91 1.41 -636.24 -0.90 -28.80 16 7 C 0.13 4.87 4.87 86.38 0.42 5.29 16 8 C -0.11 -3.43 3.10 -10.79 -0.03 -3.47 16 9 C -0.13 -3.19 9.19 71.98 0.66 -2.53 16 10 C -0.13 -4.79 7.79 71.98 0.56 -4.23 16 11 C 0.55 32.02 6.13 86.30 0.53 32.55 16 12 O -0.63 -43.19 14.99 -4.51 -0.07 -43.26 16 13 C -0.55 -30.16 7.10 24.79 0.18 -29.99 16 14 H 0.09 4.65 4.67 -2.91 -0.01 4.63 16 15 C 0.03 1.72 5.50 85.33 0.47 2.19 16 16 N -0.82 -50.80 11.82 21.85 0.26 -50.54 16 17 Si 0.98 40.81 29.56 68.60 2.03 42.84 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 21 C -0.11 -4.14 5.90 -19.71 -0.12 -4.26 16 22 C -0.10 -3.42 9.70 71.24 0.69 -2.73 16 23 C -0.12 -3.78 9.33 22.25 0.21 -3.57 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.30 8.08 -2.39 -0.02 1.29 16 26 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 27 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 29 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 30 H 0.08 3.04 5.78 -2.39 -0.01 3.03 16 31 H 0.05 1.84 7.96 -2.39 -0.02 1.83 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.02 1.04 6.34 -2.39 -0.02 1.03 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 2.04 7.02 -2.39 -0.02 2.03 16 38 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.08 2.34 8.05 -2.39 -0.02 2.32 16 41 H 0.03 1.43 7.38 -2.38 -0.02 1.41 16 42 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -76.73 340.31 7.08 -69.65 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.99 Total: 27.97 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.77 Total: -17.85 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -0.64 Total: -79.34 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.07 Total: -43.26 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -76.73 7.08 -69.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846301791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.542 kcal (2) G-P(sol) polarization free energy of solvation -76.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds