Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38289 * 119.97392 * 2 1 4 4 C 1.38239 * 120.11072 * 180.25529 * 3 2 1 5 5 C 1.38163 * 120.05513 * 359.76929 * 4 3 2 6 6 C 1.38708 * 119.94675 * 359.97438 * 5 4 3 7 7 O 1.35901 * 120.05903 * 180.02562 * 6 5 4 8 8 C 1.38120 * 119.97032 * 179.74733 * 2 1 3 9 9 C 1.50703 * 120.03015 * 359.97438 * 8 2 1 10 10 N 1.46901 * 109.47304 * 260.44936 * 9 8 2 11 11 C 1.46900 * 111.00162 * 193.76872 * 10 9 8 12 12 C 1.50691 * 109.46960 * 158.68471 * 11 10 9 13 13 H 1.07997 * 120.00432 * 1.06689 * 12 11 10 14 14 C 1.37880 * 120.00084 * 181.07019 * 12 11 10 15 15 N 1.31516 * 119.99839 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00193 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47098 * 89.99948 * 16 14 12 18 18 H 1.48498 * 109.46902 * 209.99929 * 16 14 12 19 19 H 1.48497 * 109.47321 * 329.99731 * 16 14 12 20 20 C 1.46900 * 110.99616 * 69.81560 * 10 9 8 21 21 C 1.53005 * 109.46756 * 200.77921 * 20 10 9 22 22 C 1.53002 * 117.50067 * 246.05903 * 21 20 10 23 23 C 1.53002 * 117.49919 * 177.39782 * 21 20 10 24 24 H 1.09004 * 109.47395 * 273.09845 * 1 2 3 25 25 H 1.08998 * 109.47337 * 33.09476 * 1 2 3 26 26 H 1.08998 * 109.47135 * 153.09341 * 1 2 3 27 27 H 1.07998 * 119.94143 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97157 * 179.75011 * 4 3 2 29 29 H 1.08006 * 120.02869 * 180.02562 * 5 4 3 30 30 H 0.96699 * 114.00371 * 269.98240 * 7 6 5 31 31 H 1.09004 * 109.47314 * 140.44513 * 9 8 2 32 32 H 1.09000 * 109.47092 * 20.45141 * 9 8 2 33 33 H 1.09003 * 109.46877 * 278.68563 * 11 10 9 34 34 H 1.09006 * 109.46822 * 38.68470 * 11 10 9 35 35 H 0.96995 * 120.00415 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47507 * 80.78378 * 20 10 9 37 37 H 1.09004 * 109.47585 * 320.77450 * 20 10 9 38 38 H 1.09003 * 115.55149 * 31.73038 * 21 20 10 39 39 H 1.08997 * 117.49356 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.50227 * 145.02019 * 22 21 20 41 41 H 1.09002 * 117.49732 * 214.97989 * 23 21 20 42 42 H 1.08998 * 117.49737 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0053 5 6 4.2751 0.0070 -0.0059 6 6 3.5845 -1.1959 -0.0005 7 8 4.2657 -2.3719 -0.0005 8 6 2.1970 -1.1965 0.0053 9 6 1.4435 -2.5016 0.0116 10 7 1.3982 -3.0343 1.3799 11 6 0.9688 -4.4391 1.3840 12 6 1.4190 -5.0982 2.6622 13 1 1.9540 -4.5259 3.4056 14 6 1.1479 -6.4319 2.8828 15 7 0.4960 -7.1288 1.9778 16 14 1.7065 -7.2491 4.4669 17 1 0.6414 -7.1187 5.4935 18 1 1.9764 -8.6872 4.2135 19 1 2.9458 -6.5911 4.9531 20 6 0.5285 -2.2155 2.2350 21 6 0.8888 -2.4512 3.7032 22 6 -0.1581 -3.1321 4.5870 23 6 0.1318 -1.6386 4.7556 24 1 -0.3634 0.0555 1.0262 25 1 -0.3634 0.8609 -0.5611 26 1 -0.3633 -0.9164 -0.4650 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1381 -0.0094 29 1 5.3552 0.0101 -0.0096 30 1 4.4592 -2.7144 -0.8838 31 1 1.9478 -3.2155 -0.6397 32 1 0.4278 -2.3365 -0.3478 33 1 -0.1179 -4.4871 1.3136 34 1 1.4113 -4.9568 0.5329 35 1 0.3049 -8.0670 2.1330 36 1 -0.5120 -2.4934 2.0671 37 1 0.6671 -1.1620 1.9915 38 1 1.9369 -2.6768 3.8997 39 1 -1.1037 -3.4118 4.1226 40 1 0.2012 -3.8055 5.3652 41 1 0.6818 -1.3300 5.6446 42 1 -0.6226 -0.9358 4.4020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876692174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = 15.223792 kcal Electronic energy + Delta-G solvation = -22017.363085 eV Core-core repulsion = 18963.549470 eV Total energy + Delta-G solvation = -3053.813615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92817 -37.51725 -36.53646 -35.20928 -32.89327 -31.99570 -30.18863 -27.31442 -27.18597 -26.18106 -23.88932 -21.69574 -21.63770 -21.18706 -20.26460 -19.45333 -17.71755 -16.38208 -16.05822 -15.59644 -15.18139 -14.77208 -14.55405 -14.37184 -13.79851 -13.45343 -13.21089 -13.04940 -12.75536 -12.60176 -12.27473 -11.85427 -11.69820 -11.55920 -11.24165 -11.05315 -11.01965 -10.82633 -10.60666 -10.51112 -10.38962 -10.11790 -9.84205 -9.49469 -9.10166 -8.86192 -8.45454 -8.31505 -8.26416 -7.15544 -5.90427 -3.87437 1.46317 1.50388 3.37378 3.43896 3.48695 3.78564 4.47749 4.52333 4.59299 4.93208 4.99500 5.08087 5.19169 5.32002 5.44499 5.44870 5.55522 5.65477 5.69235 5.71299 5.81224 5.93172 6.01925 6.07549 6.15106 6.17966 6.27802 6.31798 6.38723 6.51384 6.55313 6.64664 6.68792 6.80489 6.85087 7.03826 7.12593 7.32149 7.39409 7.96388 8.03898 8.21242 8.30601 8.66106 9.19233 9.74405 11.20885 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.005843 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.470892 B = 4790.685356 C = 5340.024721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.109 4.109 5 C -0.158 4.158 6 C 0.134 3.866 7 O -0.480 6.480 8 C -0.091 4.091 9 C 0.094 3.906 10 N -0.519 5.519 11 C 0.196 3.804 12 C -0.482 4.482 13 H 0.069 0.931 14 C 0.052 3.948 15 N -0.906 5.906 16 Si 0.889 3.111 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.094 3.906 21 C -0.106 4.106 22 C -0.156 4.156 23 C -0.207 4.207 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.382 0.618 31 H 0.075 0.925 32 H 0.034 0.966 33 H -0.010 1.010 34 H 0.025 0.975 35 H 0.258 0.742 36 H 0.024 0.976 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 15.457 -4.960 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.070 4.070 3 C -0.154 4.154 4 C -0.128 4.128 5 C -0.177 4.177 6 C 0.089 3.911 7 O -0.289 6.289 8 C -0.092 4.092 9 C -0.033 4.033 10 N -0.243 5.243 11 C 0.071 3.929 12 C -0.521 4.521 13 H 0.087 0.913 14 C -0.147 4.147 15 N -0.547 5.547 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.035 4.035 21 C -0.125 4.125 22 C -0.193 4.193 23 C -0.245 4.245 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.237 0.763 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.008 0.992 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.291 15.315 -4.194 16.043 hybrid contribution -0.449 -0.760 0.112 0.890 sum 1.841 14.555 -4.082 15.228 Atomic orbital electron populations 1.21014 0.91480 1.02784 1.02611 1.19662 0.95879 0.92271 0.99146 1.20911 0.94176 0.97202 1.03086 1.20870 0.94118 0.97333 1.00465 1.21373 1.00136 0.92141 1.04049 1.18264 0.89283 0.85292 0.98255 1.84973 1.75677 1.35959 1.32280 1.20204 0.93307 0.95355 1.00350 1.20935 0.96870 0.92317 0.93203 1.62058 1.51915 1.04560 1.05791 1.19794 0.93511 0.81376 0.98196 1.21243 1.34246 0.94006 1.02583 0.91280 1.24929 0.95844 0.97397 0.96568 1.69953 1.41931 1.08455 1.34372 0.86635 0.79054 0.78570 0.84016 1.20898 1.21537 1.19898 1.21650 0.93631 0.96404 0.91772 1.22076 0.97957 1.01447 0.91017 1.22761 1.00764 0.92761 1.03002 1.23059 1.04517 0.95155 1.01777 0.90762 0.91812 0.90888 0.86384 0.86256 0.85948 0.76273 0.90635 0.94774 0.99241 0.95652 0.93278 0.95835 0.91989 0.87451 0.89554 0.89680 0.89896 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.70 36.01 0.31 -1.17 16 2 C -0.07 -0.96 5.08 -104.65 -0.53 -1.49 16 3 C -0.14 -1.67 9.71 -39.56 -0.38 -2.05 16 4 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 5 C -0.16 -2.13 9.99 -39.44 -0.39 -2.52 16 6 C 0.13 2.11 6.68 -39.22 -0.26 1.85 16 7 O -0.48 -7.75 12.73 -19.43 -0.25 -8.00 16 8 C -0.09 -1.46 4.82 -104.47 -0.50 -1.96 16 9 C 0.09 1.71 4.53 -4.97 -0.02 1.69 16 10 N -0.52 -11.17 4.39 -237.51 -1.04 -12.22 16 11 C 0.20 5.05 4.78 -4.98 -0.02 5.03 16 12 C -0.48 -13.32 7.61 -34.44 -0.26 -13.59 16 13 H 0.07 1.92 5.53 -52.49 -0.29 1.63 16 14 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 15 N -0.91 -27.02 13.29 55.43 0.74 -26.28 16 16 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.09 1.83 4.83 -3.82 -0.02 1.81 16 21 C -0.11 -2.11 3.92 -90.61 -0.36 -2.47 16 22 C -0.16 -3.02 9.43 -26.69 -0.25 -3.27 16 23 C -0.21 -3.43 10.25 -26.69 -0.27 -3.71 16 24 H 0.07 0.91 6.82 -51.93 -0.35 0.56 16 25 H 0.06 0.63 8.11 -51.93 -0.42 0.20 16 26 H 0.07 0.93 5.75 -51.93 -0.30 0.63 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.38 4.25 9.06 45.56 0.41 4.66 16 31 H 0.08 1.38 7.41 -51.93 -0.38 1.00 16 32 H 0.03 0.59 5.52 -51.93 -0.29 0.30 16 33 H -0.01 -0.28 7.69 -51.93 -0.40 -0.68 16 34 H 0.03 0.70 7.65 -51.93 -0.40 0.30 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.02 0.48 7.43 -51.93 -0.39 0.09 16 37 H 0.06 1.10 4.11 -51.93 -0.21 0.89 16 38 H 0.11 2.37 7.13 -51.93 -0.37 2.00 16 39 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -31.54 334.23 -9.48 -41.02 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.48 Total: 5.59 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -3.46 Total: -22.19 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.31 Total: -38.50 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.25 Total: -8.00 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.54 -9.48 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876692174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.245 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds