Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38289 * 119.97392 * 2 1 4 4 C 1.38239 * 120.11072 * 180.25529 * 3 2 1 5 5 C 1.38163 * 120.05513 * 359.76929 * 4 3 2 6 6 C 1.38708 * 119.94675 * 359.97438 * 5 4 3 7 7 O 1.35901 * 120.05903 * 180.02562 * 6 5 4 8 8 C 1.38120 * 119.97032 * 179.74733 * 2 1 3 9 9 C 1.50703 * 120.03015 * 359.97438 * 8 2 1 10 10 N 1.46901 * 109.47304 * 260.44936 * 9 8 2 11 11 C 1.46900 * 111.00162 * 193.76872 * 10 9 8 12 12 C 1.50691 * 109.46960 * 158.68471 * 11 10 9 13 13 H 1.07997 * 120.00432 * 1.06689 * 12 11 10 14 14 C 1.37880 * 120.00084 * 181.07019 * 12 11 10 15 15 N 1.31516 * 119.99839 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00193 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47098 * 89.99948 * 16 14 12 18 18 H 1.48498 * 109.46902 * 209.99929 * 16 14 12 19 19 H 1.48497 * 109.47321 * 329.99731 * 16 14 12 20 20 C 1.46900 * 110.99616 * 69.81560 * 10 9 8 21 21 C 1.53005 * 109.46756 * 200.77921 * 20 10 9 22 22 C 1.53002 * 117.50067 * 246.05903 * 21 20 10 23 23 C 1.53002 * 117.49919 * 177.39782 * 21 20 10 24 24 H 1.09004 * 109.47395 * 273.09845 * 1 2 3 25 25 H 1.08998 * 109.47337 * 33.09476 * 1 2 3 26 26 H 1.08998 * 109.47135 * 153.09341 * 1 2 3 27 27 H 1.07998 * 119.94143 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97157 * 179.75011 * 4 3 2 29 29 H 1.08006 * 120.02869 * 180.02562 * 5 4 3 30 30 H 0.96699 * 114.00371 * 269.98240 * 7 6 5 31 31 H 1.09004 * 109.47314 * 140.44513 * 9 8 2 32 32 H 1.09000 * 109.47092 * 20.45141 * 9 8 2 33 33 H 1.09003 * 109.46877 * 278.68563 * 11 10 9 34 34 H 1.09006 * 109.46822 * 38.68470 * 11 10 9 35 35 H 0.96995 * 120.00415 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47507 * 80.78378 * 20 10 9 37 37 H 1.09004 * 109.47585 * 320.77450 * 20 10 9 38 38 H 1.09003 * 115.55149 * 31.73038 * 21 20 10 39 39 H 1.08997 * 117.49356 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.50227 * 145.02019 * 22 21 20 41 41 H 1.09002 * 117.49732 * 214.97989 * 23 21 20 42 42 H 1.08998 * 117.49737 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0053 5 6 4.2751 0.0070 -0.0059 6 6 3.5845 -1.1959 -0.0005 7 8 4.2657 -2.3719 -0.0005 8 6 2.1970 -1.1965 0.0053 9 6 1.4435 -2.5016 0.0116 10 7 1.3982 -3.0343 1.3799 11 6 0.9688 -4.4391 1.3840 12 6 1.4190 -5.0982 2.6622 13 1 1.9540 -4.5259 3.4056 14 6 1.1479 -6.4319 2.8828 15 7 0.4960 -7.1288 1.9778 16 14 1.7065 -7.2491 4.4669 17 1 0.6414 -7.1187 5.4935 18 1 1.9764 -8.6872 4.2135 19 1 2.9458 -6.5911 4.9531 20 6 0.5285 -2.2155 2.2350 21 6 0.8888 -2.4512 3.7032 22 6 -0.1581 -3.1321 4.5870 23 6 0.1318 -1.6386 4.7556 24 1 -0.3634 0.0555 1.0262 25 1 -0.3634 0.8609 -0.5611 26 1 -0.3633 -0.9164 -0.4650 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1381 -0.0094 29 1 5.3552 0.0101 -0.0096 30 1 4.4592 -2.7144 -0.8838 31 1 1.9478 -3.2155 -0.6397 32 1 0.4278 -2.3365 -0.3478 33 1 -0.1179 -4.4871 1.3136 34 1 1.4113 -4.9568 0.5329 35 1 0.3049 -8.0670 2.1330 36 1 -0.5120 -2.4934 2.0671 37 1 0.6671 -1.1620 1.9915 38 1 1.9369 -2.6768 3.8997 39 1 -1.1037 -3.4118 4.1226 40 1 0.2012 -3.8055 5.3652 41 1 0.6818 -1.3300 5.6446 42 1 -0.6226 -0.9358 4.4020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876692174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = -5.050656 kcal Electronic energy + Delta-G solvation = -22018.242251 eV Core-core repulsion = 18963.549470 eV Total energy + Delta-G solvation = -3054.692781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07557 -39.06319 -37.68177 -36.74602 -34.76210 -33.39778 -31.42860 -29.19938 -28.46942 -27.41468 -25.61225 -23.18895 -23.05284 -22.58726 -21.54318 -21.03822 -18.87641 -18.38303 -17.21850 -16.87128 -16.81325 -16.27212 -16.14544 -15.77069 -15.38286 -14.91684 -14.42623 -14.30000 -14.20803 -13.93143 -13.71037 -13.45136 -13.04836 -12.95172 -12.76100 -12.61846 -12.44448 -12.34905 -12.24664 -12.19784 -12.01700 -11.73440 -11.34088 -11.10352 -10.93241 -10.60712 -10.37676 -9.53423 -9.35784 -8.90873 -8.10562 -6.14694 0.43367 0.43912 1.38761 1.39799 1.50619 2.43592 2.73973 3.07776 3.21847 3.43214 3.47532 3.89212 3.93831 4.07678 4.14099 4.17337 4.25990 4.38201 4.43715 4.61027 4.67362 4.67936 4.76010 4.77730 4.82670 4.85332 4.93430 4.99691 5.12014 5.14338 5.20918 5.30187 5.32899 5.35897 5.52397 5.55788 5.62074 5.75220 5.79823 6.05821 6.17952 6.48173 6.70281 6.98736 7.00817 7.51650 9.00469 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.005843 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.470892 B = 4790.685356 C = 5340.024721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.100 4.100 5 C -0.165 4.165 6 C 0.113 3.887 7 O -0.506 6.506 8 C -0.116 4.116 9 C 0.098 3.902 10 N -0.528 5.528 11 C 0.214 3.786 12 C -0.484 4.484 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.941 5.941 16 Si 0.951 3.049 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.102 3.898 21 C -0.130 4.130 22 C -0.174 4.174 23 C -0.163 4.163 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.397 0.603 31 H 0.060 0.940 32 H 0.041 0.959 33 H -0.039 1.039 34 H -0.004 1.004 35 H 0.259 0.741 36 H 0.012 0.988 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 18.570 -4.025 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.118 4.118 5 C -0.183 4.183 6 C 0.068 3.932 7 O -0.317 6.317 8 C -0.117 4.117 9 C -0.030 4.030 10 N -0.251 5.251 11 C 0.088 3.912 12 C -0.523 4.523 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.584 5.584 16 Si 0.777 3.223 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.026 4.026 21 C -0.149 4.149 22 C -0.211 4.211 23 C -0.200 4.200 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.255 0.745 31 H 0.078 0.922 32 H 0.059 0.941 33 H -0.021 1.021 34 H 0.014 0.986 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.625 18.449 -3.268 18.919 hybrid contribution -0.521 -1.639 -0.254 1.739 sum 2.104 16.809 -3.522 17.303 Atomic orbital electron populations 1.21027 0.90453 1.03413 1.02899 1.19897 0.96762 0.92119 0.98695 1.21290 0.94535 0.97636 1.01596 1.21310 0.94299 0.98032 0.98143 1.21590 1.01041 0.91818 1.03859 1.18557 0.89425 0.85847 0.99357 1.84907 1.75882 1.36879 1.34080 1.20061 0.93540 0.94789 1.03347 1.20880 0.97582 0.93480 0.91035 1.61982 1.52134 1.02730 1.08286 1.19408 0.91270 0.84122 0.96401 1.21465 1.33605 0.94241 1.02954 0.91539 1.25717 0.95993 0.98112 0.99678 1.70079 1.43236 1.08742 1.36295 0.85650 0.78838 0.77478 0.80335 1.19888 1.21185 1.19447 1.21629 0.92467 0.97095 0.91428 1.22007 0.96769 1.04275 0.91873 1.22711 1.00087 0.95313 1.03015 1.23128 1.03111 0.93254 1.00516 0.90760 0.88920 0.92289 0.83161 0.82796 0.84509 0.74517 0.92162 0.94132 1.02100 0.98574 0.93225 0.96944 0.89685 0.89973 0.90664 0.90579 0.87789 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.70 71.24 0.62 -2.07 16 2 C -0.07 -1.90 5.08 -19.88 -0.10 -2.01 16 3 C -0.13 -2.74 9.71 22.28 0.22 -2.52 16 4 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16 5 C -0.16 -4.09 9.99 22.36 0.22 -3.87 16 6 C 0.11 3.52 6.68 22.51 0.15 3.67 16 7 O -0.51 -16.85 12.73 -92.43 -1.18 -18.03 16 8 C -0.12 -3.70 4.82 -19.77 -0.10 -3.80 16 9 C 0.10 3.68 4.53 85.56 0.39 4.07 16 10 N -0.53 -23.60 4.39 -905.34 -3.97 -27.57 16 11 C 0.21 11.66 4.78 85.55 0.41 12.06 16 12 C -0.48 -27.72 7.61 25.60 0.19 -27.53 16 13 H 0.07 3.80 5.53 -2.91 -0.02 3.78 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 16 Si 0.95 46.04 29.54 68.60 2.03 48.06 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.10 4.01 4.83 86.30 0.42 4.42 16 21 C -0.13 -5.16 3.92 -10.79 -0.04 -5.20 16 22 C -0.17 -6.72 9.43 30.62 0.29 -6.43 16 23 C -0.16 -4.97 10.25 30.62 0.31 -4.66 16 24 H 0.07 1.64 6.82 -2.38 -0.02 1.63 16 25 H 0.09 1.49 8.11 -2.39 -0.02 1.47 16 26 H 0.06 1.46 5.75 -2.39 -0.01 1.45 16 27 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.40 9.41 9.06 -74.06 -0.67 8.74 16 31 H 0.06 2.38 7.41 -2.39 -0.02 2.36 16 32 H 0.04 1.46 5.52 -2.39 -0.01 1.44 16 33 H -0.04 -2.28 7.69 -2.39 -0.02 -2.30 16 34 H 0.00 -0.23 7.65 -2.38 -0.02 -0.25 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.01 0.51 7.43 -2.39 -0.02 0.50 16 37 H 0.09 2.93 4.11 -2.39 -0.01 2.92 16 38 H 0.08 3.67 7.13 -2.39 -0.02 3.66 16 39 H 0.07 3.03 8.04 -2.39 -0.02 3.01 16 40 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -70.21 334.23 1.18 -69.03 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.35 Total: 21.27 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.67 Total: -35.10 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -3.69 Total: -85.23 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.18 Total: -18.03 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -70.21 1.18 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876692174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.979 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds