Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38285 * 119.97259 * 2 1 4 4 C 1.38245 * 120.11020 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.05956 * 0.02562 * 4 3 2 6 6 C 1.38713 * 119.94095 * 0.02562 * 5 4 3 7 7 O 1.35896 * 120.05479 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97101 * 180.29119 * 2 1 3 9 9 C 1.50702 * 120.02894 * 0.02893 * 8 2 1 10 10 N 1.46899 * 109.46867 * 270.27063 * 9 8 2 11 11 C 1.46846 * 110.99808 * 294.20999 * 10 9 8 12 12 C 1.53045 * 109.52251 * 174.16249 * 11 10 9 13 13 C 1.53115 * 109.27555 * 59.17750 * 12 11 10 14 14 C 1.50707 * 109.57169 * 182.40718 * 13 12 11 15 15 H 1.08004 * 119.99870 * 119.71126 * 14 13 12 16 16 C 1.37874 * 120.00068 * 299.71780 * 14 13 12 17 17 N 1.31507 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46997 * 60.00169 * 18 16 14 20 20 H 1.48503 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47271 * 299.99820 * 18 16 14 22 22 C 1.53116 * 109.16322 * 302.34602 * 13 12 11 23 23 C 1.46842 * 110.99926 * 170.00057 * 10 9 8 24 24 H 1.08993 * 109.47040 * 90.00257 * 1 2 3 25 25 H 1.08995 * 109.47088 * 210.00577 * 1 2 3 26 26 H 1.09003 * 109.47008 * 330.00320 * 1 2 3 27 27 H 1.08007 * 119.94861 * 359.97438 * 3 2 1 28 28 H 1.08008 * 119.97143 * 180.02562 * 4 3 2 29 29 H 1.07991 * 120.03166 * 180.02562 * 5 4 3 30 30 H 0.96700 * 114.00170 * 89.99949 * 7 6 5 31 31 H 1.08993 * 109.47054 * 30.26951 * 9 8 2 32 32 H 1.08995 * 109.46853 * 150.27012 * 9 8 2 33 33 H 1.09000 * 109.46369 * 294.17674 * 11 10 9 34 34 H 1.09001 * 109.46458 * 54.14778 * 11 10 9 35 35 H 1.08997 * 109.49933 * 299.23444 * 12 11 10 36 36 H 1.08996 * 109.50244 * 179.12138 * 12 11 10 37 37 H 1.08994 * 109.52703 * 62.25373 * 13 12 11 38 38 H 0.97003 * 119.99723 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.50002 * 297.71447 * 22 13 12 40 40 H 1.08999 * 109.53712 * 177.61937 * 22 13 12 41 41 H 1.08997 * 109.46284 * 305.85156 * 23 10 9 42 42 H 1.09001 * 109.46464 * 65.83595 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5846 -1.1959 -0.0005 7 8 4.2658 -2.3718 -0.0011 8 6 2.1970 -1.1965 -0.0061 9 6 1.4435 -2.5016 -0.0134 10 7 1.1925 -2.9297 1.3692 11 6 2.4495 -3.2498 2.0575 12 6 2.1639 -3.5500 3.5308 13 6 1.1927 -4.7298 3.6272 14 6 0.8606 -4.9934 5.0734 15 1 -0.1621 -4.9253 5.4137 16 6 1.8624 -5.3214 5.9620 17 7 3.1077 -5.4047 5.5476 18 14 1.4508 -5.6475 7.7547 19 1 0.5032 -6.7873 7.8456 20 1 2.6944 -5.9780 8.4960 21 1 0.8275 -4.4371 8.3476 22 6 -0.0889 -4.3896 2.8616 23 6 0.2620 -4.0651 1.4078 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6565 2.1325 -0.0004 28 1 4.1176 2.1382 0.0010 29 1 5.3552 0.0102 0.0014 30 1 4.4626 -2.7127 0.8822 31 1 0.4935 -2.3697 -0.5311 32 1 2.0349 -3.2597 -0.5268 33 1 2.9069 -4.1224 1.5911 34 1 3.1296 -2.4011 1.9850 35 1 1.7192 -2.6731 4.0012 36 1 3.0951 -3.8028 4.0378 37 1 1.6526 -5.6168 3.1916 38 1 3.8125 -5.6358 6.1728 39 1 -0.5692 -3.5259 3.3216 40 1 -0.7679 -5.2418 2.8906 41 1 -0.6468 -3.8085 0.8635 42 1 0.7297 -4.9339 0.9447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877191327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = -27.258428 kcal Electronic energy + Delta-G solvation = -21961.414451 eV Core-core repulsion = 18905.758668 eV Total energy + Delta-G solvation = -3055.655783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20812 -37.89049 -36.77139 -34.25879 -32.60746 -31.35310 -29.83066 -29.80996 -27.06923 -26.26941 -24.35169 -22.20717 -21.94735 -21.52776 -20.33689 -18.68630 -17.81888 -16.40365 -16.04636 -15.97435 -15.45975 -14.75709 -14.42782 -14.13090 -13.90527 -13.44498 -13.25132 -12.91602 -12.78156 -12.58402 -12.35255 -12.11403 -11.89163 -11.66272 -11.43342 -11.26821 -11.23749 -10.92470 -10.71371 -10.49528 -10.28051 -10.18050 -9.96514 -9.43431 -8.98264 -8.71788 -8.57111 -8.46077 -8.28778 -7.72456 -5.97077 -4.02075 1.32923 1.39282 3.33192 3.37708 3.40614 3.63263 4.32054 4.45550 4.57210 4.87052 4.92132 5.07345 5.25155 5.33365 5.39323 5.59537 5.64666 5.68683 5.72030 5.79819 5.87271 5.91212 6.04690 6.10985 6.15876 6.26301 6.29295 6.45356 6.50366 6.55182 6.62311 6.71725 6.84850 6.91466 7.07615 7.15811 7.41979 7.60623 7.66758 7.76708 7.82855 8.04987 8.14654 8.48631 9.01230 9.62272 11.09207 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.004748 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.246749 B = 5895.557025 C = 6242.569852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.155 4.155 6 C 0.116 3.884 7 O -0.503 6.503 8 C -0.093 4.093 9 C 0.090 3.910 10 N -0.527 5.527 11 C 0.056 3.944 12 C -0.104 4.104 13 C 0.049 3.951 14 C -0.510 4.510 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.106 4.106 23 C 0.060 3.940 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.392 0.608 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.026 0.974 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.259 0.741 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 10.610 -11.946 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.153 4.153 4 C -0.124 4.124 5 C -0.174 4.174 6 C 0.071 3.929 7 O -0.317 6.317 8 C -0.094 4.094 9 C -0.037 4.037 10 N -0.252 5.252 11 C -0.071 4.071 12 C -0.142 4.142 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.067 4.067 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.252 0.748 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.968 10.978 -12.218 16.454 hybrid contribution 0.455 -0.863 1.104 1.473 sum -0.513 10.115 -11.115 15.037 Atomic orbital electron populations 1.20858 0.90952 1.03827 1.01832 1.19644 0.96257 0.91814 0.97468 1.21008 0.94171 0.97459 1.02644 1.20930 0.94202 0.97393 0.99892 1.21338 1.00254 0.91996 1.03764 1.18291 0.89502 0.85331 0.99758 1.84763 1.76045 1.36302 1.34585 1.19984 0.92607 0.95433 1.01397 1.20951 0.98671 0.92777 0.91338 1.62057 1.13907 1.36694 1.12521 1.22375 0.89656 0.97062 0.98010 1.21672 1.03284 0.98798 0.90469 1.18668 0.90286 0.93562 0.94480 1.21172 0.93594 1.46392 0.93693 0.92826 1.24954 0.95098 0.95367 0.98528 1.69856 0.99601 1.48961 1.34788 0.86702 0.77561 0.78707 0.85270 1.20376 1.21379 1.20327 1.21677 1.00243 0.99846 0.92602 1.22132 0.94711 0.90725 0.99182 0.91619 0.89853 0.91692 0.86100 0.85995 0.85775 0.74838 0.90363 0.93834 0.95558 0.93364 0.93861 0.88986 0.96143 0.93063 0.92489 0.93155 0.92403 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.18 36.01 0.33 -1.01 16 2 C -0.05 -0.68 5.88 -104.65 -0.62 -1.30 16 3 C -0.13 -1.61 9.70 -39.56 -0.38 -2.00 16 4 C -0.11 -1.24 10.04 -39.61 -0.40 -1.64 16 5 C -0.15 -2.03 9.99 -39.43 -0.39 -2.43 16 6 C 0.12 1.73 5.53 -39.21 -0.22 1.52 16 7 O -0.50 -7.59 12.02 -19.41 -0.23 -7.82 16 8 C -0.09 -1.39 4.89 -104.47 -0.51 -1.90 16 9 C 0.09 1.38 4.13 -4.98 -0.02 1.36 16 10 N -0.53 -9.24 4.59 -236.12 -1.08 -10.32 16 11 C 0.06 1.07 3.97 -3.83 -0.02 1.06 16 12 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 13 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 14 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 17 N -0.89 -25.20 11.37 55.43 0.63 -24.57 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.11 -2.19 5.32 -26.65 -0.14 -2.33 16 23 C 0.06 1.06 5.46 -3.84 -0.02 1.04 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.07 6.67 -51.93 -0.35 0.72 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.39 5.33 6.55 45.56 0.30 5.63 16 31 H 0.08 1.07 6.57 -51.93 -0.34 0.73 16 32 H 0.04 0.70 7.51 -51.93 -0.39 0.31 16 33 H 0.03 0.51 7.99 -51.93 -0.41 0.10 16 34 H 0.05 0.86 4.69 -51.93 -0.24 0.62 16 35 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.09 2.37 6.18 -51.93 -0.32 2.05 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -29.00 325.43 -9.85 -38.86 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.94 Total: 4.56 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -3.11 Total: -21.83 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.45 Total: -34.90 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.23 Total: -7.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.00 -9.85 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877191327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.597 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds