Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38285 * 119.97259 * 2 1 4 4 C 1.38245 * 120.11020 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.05956 * 0.02562 * 4 3 2 6 6 C 1.38713 * 119.94095 * 0.02562 * 5 4 3 7 7 O 1.35896 * 120.05479 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97101 * 180.29119 * 2 1 3 9 9 C 1.50702 * 120.02894 * 0.02893 * 8 2 1 10 10 N 1.46899 * 109.46867 * 270.27063 * 9 8 2 11 11 C 1.46846 * 110.99808 * 294.20999 * 10 9 8 12 12 C 1.53045 * 109.52251 * 174.16249 * 11 10 9 13 13 C 1.53115 * 109.27555 * 59.17750 * 12 11 10 14 14 C 1.50707 * 109.57169 * 182.40718 * 13 12 11 15 15 H 1.08004 * 119.99870 * 119.71126 * 14 13 12 16 16 C 1.37874 * 120.00068 * 299.71780 * 14 13 12 17 17 N 1.31507 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46997 * 60.00169 * 18 16 14 20 20 H 1.48503 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47271 * 299.99820 * 18 16 14 22 22 C 1.53116 * 109.16322 * 302.34602 * 13 12 11 23 23 C 1.46842 * 110.99926 * 170.00057 * 10 9 8 24 24 H 1.08993 * 109.47040 * 90.00257 * 1 2 3 25 25 H 1.08995 * 109.47088 * 210.00577 * 1 2 3 26 26 H 1.09003 * 109.47008 * 330.00320 * 1 2 3 27 27 H 1.08007 * 119.94861 * 359.97438 * 3 2 1 28 28 H 1.08008 * 119.97143 * 180.02562 * 4 3 2 29 29 H 1.07991 * 120.03166 * 180.02562 * 5 4 3 30 30 H 0.96700 * 114.00170 * 89.99949 * 7 6 5 31 31 H 1.08993 * 109.47054 * 30.26951 * 9 8 2 32 32 H 1.08995 * 109.46853 * 150.27012 * 9 8 2 33 33 H 1.09000 * 109.46369 * 294.17674 * 11 10 9 34 34 H 1.09001 * 109.46458 * 54.14778 * 11 10 9 35 35 H 1.08997 * 109.49933 * 299.23444 * 12 11 10 36 36 H 1.08996 * 109.50244 * 179.12138 * 12 11 10 37 37 H 1.08994 * 109.52703 * 62.25373 * 13 12 11 38 38 H 0.97003 * 119.99723 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.50002 * 297.71447 * 22 13 12 40 40 H 1.08999 * 109.53712 * 177.61937 * 22 13 12 41 41 H 1.08997 * 109.46284 * 305.85156 * 23 10 9 42 42 H 1.09001 * 109.46464 * 65.83595 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5846 -1.1959 -0.0005 7 8 4.2658 -2.3718 -0.0011 8 6 2.1970 -1.1965 -0.0061 9 6 1.4435 -2.5016 -0.0134 10 7 1.1925 -2.9297 1.3692 11 6 2.4495 -3.2498 2.0575 12 6 2.1639 -3.5500 3.5308 13 6 1.1927 -4.7298 3.6272 14 6 0.8606 -4.9934 5.0734 15 1 -0.1621 -4.9253 5.4137 16 6 1.8624 -5.3214 5.9620 17 7 3.1077 -5.4047 5.5476 18 14 1.4508 -5.6475 7.7547 19 1 0.5032 -6.7873 7.8456 20 1 2.6944 -5.9780 8.4960 21 1 0.8275 -4.4371 8.3476 22 6 -0.0889 -4.3896 2.8616 23 6 0.2620 -4.0651 1.4078 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6565 2.1325 -0.0004 28 1 4.1176 2.1382 0.0010 29 1 5.3552 0.0102 0.0014 30 1 4.4626 -2.7127 0.8822 31 1 0.4935 -2.3697 -0.5311 32 1 2.0349 -3.2597 -0.5268 33 1 2.9069 -4.1224 1.5911 34 1 3.1296 -2.4011 1.9850 35 1 1.7192 -2.6731 4.0012 36 1 3.0951 -3.8028 4.0378 37 1 1.6526 -5.6168 3.1916 38 1 3.8125 -5.6358 6.1728 39 1 -0.5692 -3.5259 3.3216 40 1 -0.7679 -5.2418 2.8906 41 1 -0.6468 -3.8085 0.8635 42 1 0.7297 -4.9339 0.9447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877191327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = -44.774333 kcal Electronic energy + Delta-G solvation = -21962.173998 eV Core-core repulsion = 18905.758668 eV Total energy + Delta-G solvation = -3056.415329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31112 -39.38646 -37.83780 -35.92223 -34.03084 -32.80085 -31.49702 -31.06892 -28.27392 -27.63730 -25.91346 -23.82379 -23.41748 -22.69892 -21.47526 -20.41441 -18.96568 -18.40087 -17.15111 -17.08246 -16.82295 -16.41639 -15.92496 -15.50467 -15.13748 -14.78175 -14.49319 -14.36713 -14.24665 -14.04247 -13.65663 -13.39056 -13.12874 -13.03821 -12.83833 -12.62826 -12.58434 -12.42252 -12.34462 -12.06989 -12.00929 -11.86655 -11.37900 -11.23327 -10.81578 -10.65476 -10.37264 -9.62091 -9.44276 -9.14188 -8.07316 -6.20280 0.32149 0.40969 1.42019 1.42977 1.50483 2.44381 2.62914 3.10040 3.20159 3.38224 3.83050 3.94434 4.13252 4.17964 4.21612 4.30497 4.42309 4.47857 4.49568 4.63848 4.72739 4.75305 4.76074 4.86950 4.90797 4.96269 4.98394 5.07579 5.09594 5.23919 5.33197 5.38535 5.49133 5.53547 5.55687 5.62966 5.72499 5.96641 6.00629 6.02788 6.25397 6.31246 6.41393 6.68725 6.90844 7.47362 8.97124 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.004748 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.246749 B = 5895.557025 C = 6242.569852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.102 4.102 5 C -0.166 4.166 6 C 0.091 3.909 7 O -0.514 6.514 8 C -0.117 4.117 9 C 0.098 3.902 10 N -0.528 5.528 11 C 0.072 3.928 12 C -0.093 4.093 13 C 0.044 3.956 14 C -0.533 4.533 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.951 3.049 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.098 4.098 23 C 0.065 3.935 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.393 0.607 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.018 0.982 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.062 0.938 37 H -0.012 1.012 38 H 0.260 0.740 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 12.490 -12.618 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.120 4.120 5 C -0.184 4.184 6 C 0.046 3.954 7 O -0.328 6.328 8 C -0.118 4.118 9 C -0.029 4.029 10 N -0.253 5.253 11 C -0.055 4.055 12 C -0.131 4.131 13 C 0.026 3.974 14 C -0.571 4.571 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.136 4.136 23 C -0.063 4.063 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.252 0.748 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.006 0.994 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.978 12.862 -12.903 18.326 hybrid contribution 0.778 -1.398 1.291 2.056 sum -1.200 11.464 -11.612 16.362 Atomic orbital electron populations 1.20870 0.89603 1.03745 1.02974 1.19966 0.97407 0.91759 0.96979 1.21389 0.94494 0.98101 1.01388 1.21331 0.94471 0.98031 0.98151 1.21581 1.01080 0.91995 1.03783 1.18602 0.89931 0.85707 1.01114 1.84750 1.76256 1.36932 1.34826 1.20055 0.92724 0.95754 1.03241 1.20927 0.99649 0.92848 0.89499 1.62014 1.12759 1.36260 1.14255 1.22079 0.90858 0.97256 0.95342 1.21409 1.01246 0.97432 0.93019 1.18651 0.92313 0.92705 0.93760 1.21556 0.93571 1.46671 0.95331 0.93106 1.25714 0.95001 0.95206 1.02580 1.69997 1.00320 1.49391 1.35994 0.85719 0.77446 0.78733 0.80397 1.19734 1.20996 1.19751 1.21533 0.98140 0.99760 0.94165 1.22085 0.96125 0.90838 0.97212 0.89803 0.91362 0.90307 0.83297 0.82977 0.84660 0.74753 0.88337 0.94969 0.96399 0.92037 0.95389 0.91975 0.99414 0.93114 0.92913 0.92729 0.89029 0.96189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 9.18 71.24 0.65 -1.64 16 2 C -0.06 -1.47 5.88 -19.88 -0.12 -1.59 16 3 C -0.14 -2.82 9.70 22.28 0.22 -2.60 16 4 C -0.10 -2.09 10.04 22.25 0.22 -1.87 16 5 C -0.17 -4.10 9.99 22.37 0.22 -3.88 16 6 C 0.09 2.66 5.53 22.51 0.12 2.78 16 7 O -0.51 -15.67 12.02 -92.38 -1.11 -16.79 16 8 C -0.12 -3.34 4.89 -19.77 -0.10 -3.43 16 9 C 0.10 2.87 4.13 85.56 0.35 3.22 16 10 N -0.53 -18.17 4.59 -900.95 -4.14 -22.31 16 11 C 0.07 2.82 3.97 86.33 0.34 3.16 16 12 C -0.09 -4.45 5.12 30.65 0.16 -4.30 16 13 C 0.04 2.24 2.16 -11.46 -0.02 2.22 16 14 C -0.53 -29.77 8.56 25.60 0.22 -29.55 16 15 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 16 C 0.01 0.75 5.31 84.66 0.45 1.20 16 17 N -0.92 -53.23 11.37 21.44 0.24 -52.99 16 18 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C -0.10 -4.07 5.32 30.64 0.16 -3.90 16 23 C 0.06 2.23 5.46 86.33 0.47 2.70 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.57 6.67 -2.39 -0.02 1.56 16 26 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.14 2.91 8.06 -2.92 -0.02 2.89 16 30 H 0.39 11.07 6.55 -74.06 -0.49 10.59 16 31 H 0.10 2.47 6.57 -2.39 -0.02 2.45 16 32 H 0.03 1.02 7.51 -2.39 -0.02 1.00 16 33 H 0.02 0.72 7.99 -2.39 -0.02 0.70 16 34 H 0.06 2.23 4.69 -2.39 -0.01 2.22 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 3.34 6.18 -2.39 -0.01 3.33 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.57 8.02 -2.39 -0.02 2.55 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -63.43 325.43 0.90 -62.53 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.52 Total: 21.02 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.36 Total: -37.47 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -3.89 Total: -75.30 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.11 Total: -16.79 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.43 0.90 -62.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877191327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.757 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds