Wall clock time and date at job start Mon Mar 30 2020 02:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38290 * 119.97271 * 2 1 4 4 C 1.38251 * 120.11123 * 180.02562 * 3 2 1 5 5 C 1.38163 * 120.05527 * 0.24024 * 4 3 2 6 6 C 1.38718 * 119.94360 * 359.46174 * 5 4 3 7 7 O 1.35897 * 120.05492 * 180.25498 * 6 5 4 8 8 C 1.38122 * 119.97406 * 179.97438 * 2 1 3 9 9 C 1.50700 * 120.02346 * 0.02562 * 8 2 1 10 10 N 1.46897 * 109.47557 * 90.00279 * 9 8 2 11 11 C 1.46894 * 111.00156 * 179.97438 * 10 9 8 12 12 H 1.08994 * 110.43491 * 327.53475 * 11 10 9 13 13 C 1.54268 * 110.48798 * 90.22529 * 11 10 9 14 14 C 1.53870 * 106.59842 * 142.28697 * 13 11 10 15 15 C 1.54269 * 106.60348 * 0.02562 * 14 13 11 16 16 H 1.09000 * 110.48579 * 95.06461 * 15 14 13 17 17 C 1.50700 * 110.59683 * 217.66021 * 15 14 13 18 18 H 1.08004 * 120.00031 * 114.84208 * 17 15 14 19 19 C 1.37874 * 119.99893 * 294.82986 * 17 15 14 20 20 N 1.31513 * 120.00298 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 119.99913 * 0.02562 * 19 17 15 22 22 H 1.48506 * 109.47369 * 89.99954 * 21 19 17 23 23 H 1.48500 * 109.47109 * 209.99321 * 21 19 17 24 24 H 1.48501 * 109.47551 * 329.99545 * 21 19 17 25 25 C 1.54891 * 104.19053 * 336.38738 * 15 14 13 26 26 H 1.08998 * 109.47220 * 89.99370 * 1 2 3 27 27 H 1.08995 * 109.47386 * 209.99850 * 1 2 3 28 28 H 1.09009 * 109.46901 * 329.99713 * 1 2 3 29 29 H 1.07998 * 119.94582 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.96904 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.03052 * 179.74049 * 5 4 3 32 32 H 0.96704 * 114.00242 * 270.29898 * 7 6 5 33 33 H 1.09008 * 109.46890 * 210.00260 * 9 8 2 34 34 H 1.09000 * 109.47132 * 329.99717 * 9 8 2 35 35 H 1.00905 * 110.99723 * 303.95123 * 10 9 8 36 36 H 1.08997 * 110.03159 * 261.57363 * 13 11 10 37 37 H 1.08997 * 110.03069 * 23.00257 * 13 11 10 38 38 H 1.08997 * 110.03090 * 240.71220 * 14 13 11 39 39 H 1.09009 * 110.03158 * 119.28678 * 14 13 11 40 40 H 0.96996 * 120.00197 * 180.02562 * 20 19 17 41 41 H 1.08994 * 110.76214 * 279.62691 * 25 15 14 42 42 H 1.09001 * 110.91425 * 156.32769 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2752 0.0071 -0.0061 6 6 3.5845 -1.1959 0.0002 7 8 4.2658 -2.3718 0.0000 8 6 2.1970 -1.1965 0.0005 9 6 1.4435 -2.5016 0.0005 10 7 1.1992 -2.9260 -1.3844 11 6 0.4655 -4.1980 -1.4235 12 1 0.7385 -4.8212 -0.5720 13 6 -1.0559 -3.9434 -1.4441 14 6 -1.6662 -5.0022 -2.3790 15 6 -0.4946 -5.8638 -2.8935 16 1 -0.3792 -6.7567 -2.2791 17 6 -0.7083 -6.2418 -4.3366 18 1 -0.0360 -5.8724 -5.0968 19 6 -1.7618 -7.0595 -4.6862 20 7 -1.9481 -7.3899 -5.9455 21 14 -2.9248 -7.6982 -3.3713 22 1 -4.0481 -6.7425 -3.1974 23 1 -3.4596 -9.0208 -3.7835 24 1 -2.1914 -7.8390 -2.0877 25 6 0.7438 -4.9444 -2.7517 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6565 2.1325 0.0004 30 1 4.1176 2.1382 -0.0010 31 1 5.3552 0.0102 -0.0107 32 1 4.4628 -2.7121 -0.8835 33 1 2.0324 -3.2611 0.5148 34 1 0.4909 -2.3711 0.5140 35 1 0.7104 -2.2103 -1.9011 36 1 -1.4661 -4.0509 -0.4399 37 1 -1.2620 -2.9439 -1.8270 38 1 -2.1686 -4.5165 -3.2155 39 1 -2.3727 -5.6236 -1.8285 40 1 -2.6895 -7.9648 -6.1915 41 1 0.8015 -4.2428 -3.5838 42 1 1.6588 -5.5324 -2.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877564073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:38 Heat of formation + Delta-G solvation = -32.471517 kcal Electronic energy + Delta-G solvation = -21175.496812 eV Core-core repulsion = 18119.614973 eV Total energy + Delta-G solvation = -3055.881839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19063 -38.02396 -36.90105 -34.85040 -32.71833 -31.92202 -30.29910 -28.34062 -27.54187 -26.94170 -24.68443 -23.07699 -22.03819 -20.92344 -19.89820 -19.09680 -18.03864 -16.69981 -16.39086 -16.19652 -15.59146 -14.97278 -14.89946 -14.17225 -14.04674 -13.65247 -13.48317 -13.36181 -12.93306 -12.74659 -12.48098 -12.45943 -12.17692 -11.81400 -11.77779 -11.61411 -11.23156 -10.93521 -10.75788 -10.47060 -10.26992 -10.05432 -9.96110 -9.67894 -9.39240 -8.93647 -8.82199 -8.65827 -8.52068 -8.06569 -6.03728 -4.01852 1.13055 1.15351 3.30256 3.39120 3.41197 3.43498 4.19058 4.45050 4.47279 4.64751 4.71291 4.86839 4.98652 5.16239 5.21797 5.35000 5.36101 5.40898 5.47639 5.54006 5.59909 5.68969 5.71246 5.82780 6.01668 6.02470 6.23285 6.26421 6.31874 6.39161 6.44965 6.49311 6.59660 6.69466 6.76222 6.84520 6.96073 7.22440 7.35392 7.60139 7.62293 7.65300 7.83889 8.58430 9.01351 9.59751 11.09740 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.003753 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.795201 B = 7458.496925 C = 7799.554205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.104 4.104 5 C -0.156 4.156 6 C 0.131 3.869 7 O -0.497 6.497 8 C -0.105 4.105 9 C 0.095 3.905 10 N -0.675 5.675 11 C 0.079 3.921 12 H 0.074 0.926 13 C -0.146 4.146 14 C -0.127 4.127 15 C 0.009 3.991 16 H 0.030 0.970 17 C -0.506 4.506 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.879 3.121 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.265 1.265 25 C -0.087 4.087 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.339 0.661 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 16.291 13.648 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.066 4.066 3 C -0.151 4.151 4 C -0.122 4.122 5 C -0.175 4.175 6 C 0.086 3.914 7 O -0.308 6.308 8 C -0.106 4.106 9 C -0.033 4.033 10 N -0.305 5.305 11 C -0.031 4.031 12 H 0.092 0.908 13 C -0.186 4.186 14 C -0.166 4.166 15 C -0.010 4.010 16 H 0.048 0.952 17 C -0.544 4.544 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.190 1.190 25 C -0.125 4.125 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.254 0.746 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.157 0.843 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.404 15.927 14.067 22.851 hybrid contribution -1.626 -0.094 0.372 1.671 sum 6.778 15.833 14.439 22.474 Atomic orbital electron populations 1.20909 0.91115 1.03003 1.02816 1.19711 0.96057 0.92254 0.98555 1.20994 0.94223 0.97404 1.02518 1.20967 0.94159 0.97558 0.99502 1.21396 1.00367 0.92025 1.03686 1.18240 0.89236 0.85358 0.98565 1.84711 1.75830 1.36172 1.34109 1.20036 0.93201 0.95043 1.02305 1.20862 0.97689 0.93338 0.91437 1.60701 1.52846 1.05594 1.11329 1.22609 0.90589 0.89876 0.99995 0.90779 1.22830 0.96997 0.99583 0.99146 1.22562 0.99584 0.96855 0.97571 1.19971 0.90464 0.93421 0.97137 0.95178 1.21052 1.12728 1.29383 0.91217 0.90849 1.25008 0.97491 0.95720 0.94983 1.69908 1.31019 1.36974 1.16399 0.86908 0.81548 0.77993 0.82802 1.20478 1.22078 1.18977 1.22344 0.98369 0.97447 0.94375 0.90731 0.91049 0.91445 0.86022 0.85877 0.85658 0.74647 0.89845 0.94225 0.84291 0.93462 0.92694 0.91521 0.94275 0.92789 0.91694 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.60 36.00 0.35 -0.77 16 2 C -0.07 -0.70 5.88 -104.65 -0.62 -1.31 16 3 C -0.13 -1.28 9.70 -39.56 -0.38 -1.67 16 4 C -0.10 -0.97 10.04 -39.60 -0.40 -1.36 16 5 C -0.16 -1.62 9.99 -39.43 -0.39 -2.02 16 6 C 0.13 1.56 6.68 -39.21 -0.26 1.30 16 7 O -0.50 -5.82 12.55 -19.42 -0.24 -6.06 16 8 C -0.10 -1.26 5.41 -104.47 -0.56 -1.82 16 9 C 0.10 1.19 5.04 -4.98 -0.03 1.17 16 10 N -0.67 -9.35 6.35 -106.25 -0.67 -10.02 16 11 C 0.08 1.27 3.19 -66.07 -0.21 1.06 16 12 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 13 C -0.15 -2.42 6.50 -25.61 -0.17 -2.59 16 14 C -0.13 -2.66 4.88 -25.61 -0.13 -2.79 16 15 C 0.01 0.22 2.28 -90.11 -0.21 0.01 16 16 H 0.03 0.72 7.06 -51.93 -0.37 0.35 16 17 C -0.51 -14.12 8.95 -34.44 -0.31 -14.43 16 18 H 0.07 2.22 8.01 -52.48 -0.42 1.80 16 19 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 21 Si 0.88 21.82 24.88 -169.99 -4.23 17.59 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.26 -6.31 6.41 56.52 0.36 -5.95 16 25 C -0.09 -1.70 5.96 -24.75 -0.15 -1.85 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.68 5.94 -51.93 -0.31 0.37 16 28 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.40 3.48 9.06 45.56 0.41 3.90 16 33 H 0.08 1.12 7.47 -51.92 -0.39 0.73 16 34 H 0.04 0.48 5.94 -51.93 -0.31 0.17 16 35 H 0.34 4.63 8.06 -39.29 -0.32 4.32 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.84 7.52 -51.93 -0.39 0.45 16 38 H 0.07 1.49 7.84 -51.93 -0.41 1.08 16 39 H 0.04 0.82 6.05 -51.92 -0.31 0.51 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -30.77 331.73 -8.69 -39.46 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.76 Total: 6.21 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.56 Total: -25.18 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.10 Total: -37.02 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.24 Total: -6.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.23 Total: 17.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.77 -8.69 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877564073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.989 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds