Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.97054 * 2 1 4 4 C 1.38243 * 120.11357 * 179.70006 * 3 2 1 5 5 C 1.38169 * 120.05563 * 0.29835 * 4 3 2 6 6 C 1.38714 * 119.93970 * 359.97438 * 5 4 3 7 7 O 1.35900 * 120.05533 * 180.02562 * 6 5 4 8 8 C 1.38123 * 119.97689 * 180.24931 * 2 1 3 9 9 C 1.50703 * 120.02420 * 0.02562 * 8 2 1 10 10 N 1.46900 * 109.47037 * 270.27559 * 9 8 2 11 11 C 1.46848 * 110.99781 * 294.21157 * 10 9 8 12 12 C 1.53041 * 109.52331 * 174.15965 * 11 10 9 13 13 C 1.53120 * 109.27695 * 59.17927 * 12 11 10 14 14 C 1.53121 * 109.16081 * 302.34734 * 13 12 11 15 15 H 1.09005 * 109.53160 * 297.69307 * 14 13 12 16 16 C 1.50699 * 109.50490 * 177.59594 * 14 13 12 17 17 H 1.07999 * 120.00460 * 245.63188 * 16 14 13 18 18 C 1.37879 * 119.99892 * 65.62233 * 16 14 13 19 19 N 1.31513 * 120.00216 * 9.56566 * 18 16 14 20 20 Si 1.86808 * 119.99913 * 189.55617 * 18 16 14 21 21 H 1.48492 * 109.46942 * 94.99269 * 20 18 16 22 22 H 1.48499 * 109.46883 * 214.99506 * 20 18 16 23 23 H 1.48506 * 109.47002 * 334.99473 * 20 18 16 24 24 C 1.46845 * 110.99978 * 170.00493 * 10 9 8 25 25 H 1.09001 * 109.46938 * 90.00419 * 1 2 3 26 26 H 1.09000 * 109.47228 * 210.00102 * 1 2 3 27 27 H 1.08999 * 109.47343 * 330.00365 * 1 2 3 28 28 H 1.07999 * 119.94377 * 359.97434 * 3 2 1 29 29 H 1.07999 * 119.97643 * 180.26950 * 4 3 2 30 30 H 1.07996 * 120.03177 * 179.97438 * 5 4 3 31 31 H 0.96701 * 114.00221 * 89.99897 * 7 6 5 32 32 H 1.09000 * 109.46896 * 30.27528 * 9 8 2 33 33 H 1.08993 * 109.46912 * 150.27656 * 9 8 2 34 34 H 1.09002 * 109.46533 * 294.17487 * 11 10 9 35 35 H 1.08999 * 109.46570 * 54.14254 * 11 10 9 36 36 H 1.08996 * 109.50363 * 299.24086 * 12 11 10 37 37 H 1.09002 * 109.50453 * 179.11630 * 12 11 10 38 38 H 1.08994 * 109.52779 * 182.43990 * 13 12 11 39 39 H 1.09012 * 109.57668 * 62.27960 * 13 12 11 40 40 H 0.97000 * 120.00349 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.45861 * 305.84851 * 24 10 9 42 42 H 1.08997 * 109.46631 * 65.81980 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0063 5 6 4.2752 0.0073 0.0063 6 6 3.5846 -1.1957 0.0006 7 8 4.2658 -2.3716 0.0012 8 6 2.1971 -1.1964 -0.0052 9 6 1.4436 -2.5016 -0.0115 10 7 1.1925 -2.9286 1.3715 11 6 2.4496 -3.2481 2.0600 12 6 2.1639 -3.5471 3.5335 13 6 1.1928 -4.7269 3.6309 14 6 -0.0889 -4.3873 2.8650 15 1 -0.5698 -3.5235 3.3241 16 6 -1.0268 -5.5662 2.9060 17 1 -1.2724 -6.0929 1.9957 18 6 -1.5714 -5.9724 4.1058 19 7 -1.4271 -5.2268 5.1795 20 14 -2.5145 -7.5818 4.2061 21 1 -1.6025 -8.6624 4.6598 22 1 -3.6336 -7.4404 5.1720 23 1 -3.0570 -7.9221 2.8662 24 6 0.2621 -4.0640 1.4109 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6564 2.1325 -0.0004 29 1 4.1174 2.1383 0.0106 30 1 5.3551 0.0104 0.0108 31 1 4.4590 -2.7139 0.8847 32 1 0.4935 -2.3701 -0.5293 33 1 2.0350 -3.2600 -0.5242 34 1 2.9070 -4.1211 1.5944 35 1 3.1296 -2.3995 1.9869 36 1 1.7191 -2.6699 4.0032 37 1 3.0951 -3.7995 4.0408 38 1 0.9526 -4.9157 4.6772 39 1 1.6522 -5.6150 3.1966 40 1 -1.8099 -5.5128 6.0236 41 1 -0.6467 -3.8079 0.8663 42 1 0.7297 -4.9331 0.9483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877622078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -28.380070 kcal Electronic energy + Delta-G solvation = -21917.266510 eV Core-core repulsion = 18861.562090 eV Total energy + Delta-G solvation = -3055.704421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25030 -37.90044 -36.84643 -34.12677 -32.63310 -31.59702 -30.13287 -29.66167 -26.99250 -25.62528 -24.93055 -22.46504 -21.73111 -21.58622 -20.30103 -18.74402 -17.90893 -16.39810 -16.09174 -16.02991 -15.47477 -14.59586 -14.50544 -14.07239 -13.77800 -13.55204 -13.28504 -13.10484 -12.74476 -12.56054 -12.34172 -12.11100 -11.97335 -11.67470 -11.63214 -11.25400 -11.12199 -10.94785 -10.73112 -10.68283 -10.28888 -10.18266 -9.91157 -9.47563 -9.07910 -8.76307 -8.56913 -8.50190 -8.29872 -7.65810 -6.00714 -4.02264 1.28503 1.36639 3.30856 3.38448 3.41103 3.60158 4.24824 4.42576 4.62671 4.86737 4.90680 5.04033 5.25832 5.31509 5.39753 5.54221 5.60756 5.66717 5.76203 5.78209 5.87727 5.92214 5.97036 6.11796 6.18096 6.32308 6.36727 6.40675 6.44351 6.50669 6.62002 6.68068 6.72552 6.88211 6.92257 7.16581 7.29451 7.62381 7.66639 7.73909 7.76958 8.00296 8.10924 8.47288 9.02191 9.60886 11.08418 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.004456 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.684033 B = 6282.601907 C = 6619.418453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.133 4.133 4 C -0.107 4.107 5 C -0.156 4.156 6 C 0.111 3.889 7 O -0.502 6.502 8 C -0.092 4.092 9 C 0.090 3.910 10 N -0.529 5.529 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.105 4.105 14 C 0.054 3.946 15 H 0.042 0.958 16 C -0.517 4.517 17 H 0.053 0.947 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.886 3.114 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.068 3.932 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.387 0.613 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.259 0.741 41 H 0.061 0.939 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 10.786 -8.719 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 C -0.151 4.151 4 C -0.126 4.126 5 C -0.174 4.174 6 C 0.066 3.934 7 O -0.314 6.314 8 C -0.093 4.093 9 C -0.038 4.038 10 N -0.254 5.254 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.143 4.143 14 C 0.035 3.965 15 H 0.060 0.940 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.714 3.286 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.059 4.059 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.803 11.212 -8.882 16.796 hybrid contribution 0.083 -1.620 0.251 1.641 sum 8.886 9.592 -8.630 15.667 Atomic orbital electron populations 1.20894 0.90717 1.04129 1.02023 1.19696 0.96435 0.91755 0.97037 1.21038 0.94149 0.97550 1.02388 1.20926 0.94213 0.97368 1.00048 1.21309 1.00123 0.91999 1.03989 1.18284 0.89493 0.85190 1.00436 1.84798 1.76131 1.36442 1.34075 1.20056 0.92553 0.95655 1.01018 1.20966 0.98914 0.92440 0.91438 1.62065 1.12560 1.38259 1.12472 1.22117 0.91097 0.97334 0.96064 1.21675 0.99166 1.00862 0.93860 1.21595 0.95682 0.94095 1.02947 1.18671 0.92509 0.97044 0.88227 0.94022 1.21116 1.27106 1.13868 0.93522 0.92830 1.24917 0.95890 0.96731 0.96007 1.69976 1.45646 1.36402 1.00358 0.86687 0.79552 0.84528 0.77881 1.20792 1.21315 1.19921 1.22339 0.93535 0.88631 1.01387 0.91499 0.89496 0.91635 0.86032 0.86009 0.85876 0.75441 0.90016 0.93905 0.95458 0.93082 0.91931 0.93504 0.90924 0.94851 0.93074 0.92077 0.96256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.18 36.00 0.33 -1.15 16 2 C -0.05 -0.65 5.88 -104.65 -0.62 -1.27 16 3 C -0.13 -1.56 9.70 -39.56 -0.38 -1.95 16 4 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 5 C -0.16 -1.90 9.99 -39.43 -0.39 -2.29 16 6 C 0.11 1.55 5.53 -39.22 -0.22 1.34 16 7 O -0.50 -6.87 12.03 -19.43 -0.23 -7.11 16 8 C -0.09 -1.35 4.89 -104.47 -0.51 -1.86 16 9 C 0.09 1.42 4.13 -4.97 -0.02 1.40 16 10 N -0.53 -9.54 4.59 -236.11 -1.08 -10.63 16 11 C 0.06 1.04 3.97 -3.83 -0.02 1.03 16 12 C -0.12 -2.22 6.09 -26.65 -0.16 -2.39 16 13 C -0.11 -2.41 5.09 -26.61 -0.14 -2.54 16 14 C 0.05 1.33 2.13 -91.69 -0.19 1.14 16 15 H 0.04 1.15 8.09 -51.93 -0.42 0.73 16 16 C -0.52 -14.02 8.48 -34.44 -0.29 -14.32 16 17 H 0.05 1.44 7.77 -52.49 -0.41 1.03 16 18 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 19 N -0.89 -25.28 12.19 55.43 0.68 -24.61 16 20 Si 0.89 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.07 1.41 4.68 -3.83 -0.02 1.39 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.24 6.67 -51.93 -0.35 0.90 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.39 4.37 6.53 45.56 0.30 4.67 16 32 H 0.08 1.23 6.57 -51.93 -0.34 0.89 16 33 H 0.04 0.70 7.51 -51.93 -0.39 0.31 16 34 H 0.03 0.46 7.98 -51.93 -0.41 0.04 16 35 H 0.05 0.77 4.69 -51.93 -0.24 0.53 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.86 6.99 -51.93 -0.36 1.50 16 39 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.26 8.02 -51.93 -0.42 0.84 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -29.14 326.79 -9.84 -38.98 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.98 Total: 3.67 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -3.12 Total: -21.33 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.41 Total: -35.23 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.23 Total: -7.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.14 -9.84 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.597 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds