Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.97054 * 2 1 4 4 C 1.38243 * 120.11357 * 179.70006 * 3 2 1 5 5 C 1.38169 * 120.05563 * 0.29835 * 4 3 2 6 6 C 1.38714 * 119.93970 * 359.97438 * 5 4 3 7 7 O 1.35900 * 120.05533 * 180.02562 * 6 5 4 8 8 C 1.38123 * 119.97689 * 180.24931 * 2 1 3 9 9 C 1.50703 * 120.02420 * 0.02562 * 8 2 1 10 10 N 1.46900 * 109.47037 * 270.27559 * 9 8 2 11 11 C 1.46848 * 110.99781 * 294.21157 * 10 9 8 12 12 C 1.53041 * 109.52331 * 174.15965 * 11 10 9 13 13 C 1.53120 * 109.27695 * 59.17927 * 12 11 10 14 14 C 1.53121 * 109.16081 * 302.34734 * 13 12 11 15 15 H 1.09005 * 109.53160 * 297.69307 * 14 13 12 16 16 C 1.50699 * 109.50490 * 177.59594 * 14 13 12 17 17 H 1.07999 * 120.00460 * 245.63188 * 16 14 13 18 18 C 1.37879 * 119.99892 * 65.62233 * 16 14 13 19 19 N 1.31513 * 120.00216 * 9.56566 * 18 16 14 20 20 Si 1.86808 * 119.99913 * 189.55617 * 18 16 14 21 21 H 1.48492 * 109.46942 * 94.99269 * 20 18 16 22 22 H 1.48499 * 109.46883 * 214.99506 * 20 18 16 23 23 H 1.48506 * 109.47002 * 334.99473 * 20 18 16 24 24 C 1.46845 * 110.99978 * 170.00493 * 10 9 8 25 25 H 1.09001 * 109.46938 * 90.00419 * 1 2 3 26 26 H 1.09000 * 109.47228 * 210.00102 * 1 2 3 27 27 H 1.08999 * 109.47343 * 330.00365 * 1 2 3 28 28 H 1.07999 * 119.94377 * 359.97434 * 3 2 1 29 29 H 1.07999 * 119.97643 * 180.26950 * 4 3 2 30 30 H 1.07996 * 120.03177 * 179.97438 * 5 4 3 31 31 H 0.96701 * 114.00221 * 89.99897 * 7 6 5 32 32 H 1.09000 * 109.46896 * 30.27528 * 9 8 2 33 33 H 1.08993 * 109.46912 * 150.27656 * 9 8 2 34 34 H 1.09002 * 109.46533 * 294.17487 * 11 10 9 35 35 H 1.08999 * 109.46570 * 54.14254 * 11 10 9 36 36 H 1.08996 * 109.50363 * 299.24086 * 12 11 10 37 37 H 1.09002 * 109.50453 * 179.11630 * 12 11 10 38 38 H 1.08994 * 109.52779 * 182.43990 * 13 12 11 39 39 H 1.09012 * 109.57668 * 62.27960 * 13 12 11 40 40 H 0.97000 * 120.00349 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.45861 * 305.84851 * 24 10 9 42 42 H 1.08997 * 109.46631 * 65.81980 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0063 5 6 4.2752 0.0073 0.0063 6 6 3.5846 -1.1957 0.0006 7 8 4.2658 -2.3716 0.0012 8 6 2.1971 -1.1964 -0.0052 9 6 1.4436 -2.5016 -0.0115 10 7 1.1925 -2.9286 1.3715 11 6 2.4496 -3.2481 2.0600 12 6 2.1639 -3.5471 3.5335 13 6 1.1928 -4.7269 3.6309 14 6 -0.0889 -4.3873 2.8650 15 1 -0.5698 -3.5235 3.3241 16 6 -1.0268 -5.5662 2.9060 17 1 -1.2724 -6.0929 1.9957 18 6 -1.5714 -5.9724 4.1058 19 7 -1.4271 -5.2268 5.1795 20 14 -2.5145 -7.5818 4.2061 21 1 -1.6025 -8.6624 4.6598 22 1 -3.6336 -7.4404 5.1720 23 1 -3.0570 -7.9221 2.8662 24 6 0.2621 -4.0640 1.4109 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6564 2.1325 -0.0004 29 1 4.1174 2.1383 0.0106 30 1 5.3551 0.0104 0.0108 31 1 4.4590 -2.7139 0.8847 32 1 0.4935 -2.3701 -0.5293 33 1 2.0350 -3.2600 -0.5242 34 1 2.9070 -4.1211 1.5944 35 1 3.1296 -2.3995 1.9869 36 1 1.7191 -2.6699 4.0032 37 1 3.0951 -3.7995 4.0408 38 1 0.9526 -4.9157 4.6772 39 1 1.6522 -5.6150 3.1966 40 1 -1.8099 -5.5128 6.0236 41 1 -0.6467 -3.8079 0.8663 42 1 0.7297 -4.9331 0.9483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877622078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = -46.152997 kcal Electronic energy + Delta-G solvation = -21918.037202 eV Core-core repulsion = 18861.562090 eV Total energy + Delta-G solvation = -3056.475113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31765 -39.39665 -37.83486 -35.75654 -34.17406 -32.90981 -31.75195 -30.98863 -27.99235 -26.93093 -26.82738 -23.89357 -23.30050 -22.71680 -21.45717 -20.44898 -18.95701 -18.41301 -17.15071 -17.05255 -16.88738 -16.34467 -15.77007 -15.52230 -15.09294 -14.96739 -14.47487 -14.32020 -14.29487 -14.05646 -13.65128 -13.47122 -13.41061 -12.90215 -12.83308 -12.68107 -12.59191 -12.54123 -12.26525 -12.19536 -11.91750 -11.75851 -11.40497 -11.26546 -10.84119 -10.68530 -10.41073 -9.61239 -9.43977 -9.10002 -8.12066 -6.20644 0.33042 0.41404 1.40540 1.42115 1.51975 2.42899 2.64986 3.13916 3.18428 3.37520 3.82194 3.94394 4.10597 4.12886 4.18945 4.27866 4.39655 4.48490 4.55199 4.58911 4.69425 4.74094 4.77812 4.84856 4.86464 4.92606 4.98084 5.03110 5.09593 5.14409 5.36375 5.37807 5.42763 5.49733 5.54972 5.63948 5.73960 5.93288 5.98375 6.04489 6.16114 6.28736 6.46003 6.73719 6.92144 7.46053 8.96706 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.004456 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.684033 B = 6282.601907 C = 6619.418453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.100 4.100 5 C -0.160 4.160 6 C 0.096 3.904 7 O -0.511 6.511 8 C -0.116 4.116 9 C 0.098 3.902 10 N -0.535 5.535 11 C 0.068 3.932 12 C -0.110 4.110 13 C -0.098 4.098 14 C 0.054 3.946 15 H 0.002 0.998 16 C -0.537 4.537 17 H 0.051 0.949 18 C 0.019 3.981 19 N -0.916 5.916 20 Si 0.949 3.051 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.082 3.918 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.395 0.605 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.031 0.969 40 H 0.260 0.740 41 H 0.057 0.943 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 11.936 -9.685 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.153 4.153 4 C -0.118 4.118 5 C -0.178 4.178 6 C 0.052 3.948 7 O -0.325 6.325 8 C -0.117 4.117 9 C -0.029 4.029 10 N -0.259 5.259 11 C -0.060 4.060 12 C -0.148 4.148 13 C -0.136 4.136 14 C 0.035 3.965 15 H 0.020 0.980 16 C -0.575 4.575 17 H 0.069 0.931 18 C -0.180 4.180 19 N -0.555 5.555 20 Si 0.775 3.225 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.045 4.045 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.255 0.745 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.124 12.365 -9.858 18.777 hybrid contribution -0.310 -1.895 0.537 1.994 sum 9.814 10.470 -9.321 17.112 Atomic orbital electron populations 1.20860 0.90463 1.03416 1.02709 1.19906 0.96883 0.92170 0.97322 1.21357 0.94749 0.97780 1.01414 1.21338 0.94124 0.98336 0.98038 1.21581 1.01206 0.91640 1.03393 1.18483 0.89354 0.85889 1.01121 1.84779 1.76073 1.36711 1.34894 1.20017 0.93048 0.95222 1.03366 1.20876 0.99171 0.93203 0.89634 1.61990 1.12873 1.36676 1.14409 1.22091 0.90957 0.98644 0.94309 1.21586 0.99114 0.98312 0.95768 1.21413 0.96014 0.95809 1.00389 1.18566 0.92702 0.94662 0.90545 0.98024 1.21489 1.27752 1.14734 0.93566 0.93100 1.25669 0.96946 0.99749 0.95672 1.70101 1.46662 1.37938 1.00803 0.85687 0.78289 0.80522 0.78032 1.20224 1.20979 1.19223 1.21999 0.94316 0.89641 0.98586 0.90142 0.92146 0.90327 0.83620 0.82806 0.84024 0.74519 0.89942 0.94557 0.94820 0.90587 0.93347 0.90689 0.94247 0.95038 0.93062 0.92459 0.96609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.18 71.23 0.65 -2.13 16 2 C -0.06 -1.57 5.88 -19.88 -0.12 -1.68 16 3 C -0.14 -2.75 9.70 22.28 0.22 -2.54 16 4 C -0.10 -1.86 10.04 22.25 0.22 -1.63 16 5 C -0.16 -3.41 9.99 22.37 0.22 -3.19 16 6 C 0.10 2.51 5.53 22.51 0.12 2.63 16 7 O -0.51 -13.10 12.03 -92.43 -1.11 -14.21 16 8 C -0.12 -3.25 4.89 -19.77 -0.10 -3.35 16 9 C 0.10 3.07 4.13 85.56 0.35 3.43 16 10 N -0.54 -19.35 4.59 -900.93 -4.14 -23.49 16 11 C 0.07 2.22 3.97 86.33 0.34 2.56 16 12 C -0.11 -4.12 6.09 30.65 0.19 -3.94 16 13 C -0.10 -4.61 5.09 30.67 0.16 -4.45 16 14 C 0.05 2.76 2.13 -11.49 -0.02 2.73 16 15 H 0.00 0.09 8.09 -2.38 -0.02 0.07 16 16 C -0.54 -29.91 8.48 25.60 0.22 -29.69 16 17 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 18 C 0.02 1.05 5.22 84.66 0.44 1.50 16 19 N -0.92 -53.86 12.19 21.45 0.26 -53.59 16 20 Si 0.95 43.89 29.55 68.60 2.03 45.92 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C 0.08 3.49 4.68 86.33 0.40 3.90 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.74 6.67 -2.39 -0.02 1.73 16 27 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 28 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 31 H 0.40 8.14 6.53 -74.06 -0.48 7.65 16 32 H 0.08 2.51 6.57 -2.39 -0.02 2.49 16 33 H 0.04 1.17 7.51 -2.39 -0.02 1.16 16 34 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 35 H 0.08 2.16 4.69 -2.39 -0.01 2.14 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.04 2.09 6.99 -2.39 -0.02 2.07 16 39 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -64.09 326.79 0.87 -63.22 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.52 Total: 18.01 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 3.31 Total: -35.86 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -3.88 Total: -77.08 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.11 Total: -14.21 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.09 0.87 -63.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.070 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds