Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 119.97459 * 2 1 4 4 C 1.38250 * 120.11168 * 180.02562 * 3 2 1 5 5 C 1.38158 * 120.05410 * 359.97438 * 4 3 2 6 6 C 1.38711 * 119.94786 * 0.03976 * 5 4 3 7 7 O 1.35901 * 120.05828 * 180.02562 * 6 5 4 8 8 C 1.38125 * 119.96685 * 180.02562 * 2 1 3 9 9 C 1.50697 * 120.03032 * 359.70650 * 8 2 1 10 10 N 1.46892 * 109.47413 * 90.00277 * 9 8 2 11 11 C 1.46849 * 111.00552 * 66.04309 * 10 9 8 12 12 C 1.53035 * 109.52474 * 185.84126 * 11 10 9 13 13 C 1.53115 * 109.27830 * 300.82156 * 12 11 10 14 14 C 1.53118 * 109.16214 * 57.65728 * 13 12 11 15 15 H 1.08994 * 109.50629 * 62.28540 * 14 13 12 16 16 C 1.50702 * 109.50332 * 182.36643 * 14 13 12 17 17 H 1.08003 * 120.00168 * 119.99916 * 16 14 13 18 18 C 1.37877 * 119.99748 * 299.99735 * 16 14 13 19 19 N 1.31516 * 120.00290 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99723 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47337 * 90.00118 * 20 18 16 22 22 H 1.48501 * 109.46689 * 209.99972 * 20 18 16 23 23 H 1.48498 * 109.46933 * 329.99286 * 20 18 16 24 24 C 1.46848 * 111.00298 * 190.25754 * 10 9 8 25 25 H 1.08991 * 109.47294 * 269.98009 * 1 2 3 26 26 H 1.09005 * 109.46748 * 29.97601 * 1 2 3 27 27 H 1.09001 * 109.47027 * 149.97162 * 1 2 3 28 28 H 1.07999 * 119.94699 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.96840 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.02403 * 179.97438 * 5 4 3 31 31 H 0.96701 * 113.99785 * 269.95941 * 7 6 5 32 32 H 1.08998 * 109.47107 * 210.00078 * 9 8 2 33 33 H 1.09005 * 109.46849 * 329.99396 * 9 8 2 34 34 H 1.08997 * 109.45832 * 305.85605 * 11 10 9 35 35 H 1.08999 * 109.45524 * 65.82493 * 11 10 9 36 36 H 1.09003 * 109.50363 * 60.76067 * 12 11 10 37 37 H 1.09004 * 109.50119 * 180.87923 * 12 11 10 38 38 H 1.09003 * 109.52444 * 177.55799 * 13 12 11 39 39 H 1.08997 * 109.52230 * 297.68800 * 13 12 11 40 40 H 0.97000 * 120.00090 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.46263 * 294.17443 * 24 10 9 42 42 H 1.09006 * 109.45953 * 54.13661 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2751 0.0070 -0.0005 6 6 3.5845 -1.1960 -0.0008 7 8 4.2657 -2.3719 -0.0003 8 6 2.1969 -1.1966 -0.0005 9 6 1.4434 -2.5016 0.0056 10 7 1.1924 -2.9287 -1.3773 11 6 2.4490 -3.2541 -2.0640 12 6 2.1641 -3.5529 -3.5376 13 6 1.1880 -4.7286 -3.6354 14 6 -0.0933 -4.3829 -2.8716 15 1 -0.5692 -3.5173 -3.3320 16 6 -1.0365 -5.5575 -2.9138 17 1 -1.3574 -6.0258 -1.9949 18 6 -1.4900 -6.0342 -4.1254 19 7 -1.0998 -5.4637 -5.2443 20 14 -2.6599 -7.4897 -4.1777 21 1 -4.0610 -7.0006 -4.1274 22 1 -2.4463 -8.2514 -5.4345 23 1 -2.4019 -8.3741 -3.0130 24 6 0.2571 -4.0601 -1.4173 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 1.6566 2.1324 0.0004 29 1 4.1176 2.1381 -0.0001 30 1 5.3552 0.0101 -0.0014 31 1 4.4628 -2.7127 -0.8836 32 1 2.0347 -3.2602 0.5184 33 1 0.4933 -2.3701 0.5235 34 1 3.1325 -2.4082 -1.9906 35 1 2.9020 -4.1286 -1.5970 36 1 1.7236 -2.6741 -4.0086 37 1 3.0949 -3.8096 -4.0434 38 1 0.9484 -4.9171 -4.6820 39 1 1.6440 -5.6178 -3.2002 40 1 -1.4186 -5.7993 -6.0967 41 1 0.7204 -4.9308 -0.9534 42 1 -0.6513 -3.7996 -0.8740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877622079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = -27.228183 kcal Electronic energy + Delta-G solvation = -21925.043777 eV Core-core repulsion = 18869.389306 eV Total energy + Delta-G solvation = -3055.654471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24163 -37.88565 -36.84204 -34.14206 -32.63629 -31.55293 -30.12972 -29.62434 -26.99005 -25.60049 -24.94960 -22.43084 -21.71618 -21.57592 -20.29302 -18.70528 -17.90470 -16.39868 -16.08923 -16.02502 -15.45263 -14.60132 -14.49315 -14.07709 -13.77444 -13.53580 -13.27848 -13.08940 -12.73704 -12.56920 -12.35472 -12.09712 -11.93678 -11.67092 -11.59613 -11.25263 -11.10508 -10.95245 -10.68843 -10.66599 -10.28832 -10.13513 -9.83077 -9.47764 -9.10774 -8.71229 -8.56497 -8.50105 -8.30320 -7.64835 -5.97421 -4.03640 1.28764 1.36780 3.30954 3.37802 3.40711 3.60440 4.25308 4.42140 4.63268 4.86805 4.90896 5.04306 5.25930 5.32694 5.39695 5.56560 5.60835 5.68452 5.76513 5.78766 5.88320 5.93011 5.99505 6.12069 6.21577 6.31716 6.38808 6.41166 6.45810 6.51106 6.66628 6.72272 6.74353 6.88340 6.95684 7.20942 7.38241 7.64603 7.67324 7.74762 7.79918 8.07964 8.17261 8.47957 9.00411 9.60792 11.08478 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.004456 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.083921 B = 6282.023183 C = 6635.098962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.133 4.133 4 C -0.107 4.107 5 C -0.156 4.156 6 C 0.111 3.889 7 O -0.502 6.502 8 C -0.091 4.091 9 C 0.090 3.910 10 N -0.529 5.529 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.056 3.944 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.067 3.933 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.387 0.613 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.259 0.741 41 H 0.020 0.980 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 11.120 8.749 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.050 4.050 3 C -0.151 4.151 4 C -0.126 4.126 5 C -0.174 4.174 6 C 0.066 3.934 7 O -0.314 6.314 8 C -0.092 4.092 9 C -0.038 4.038 10 N -0.254 5.254 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.037 3.963 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.059 4.059 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.246 0.754 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.169 11.518 8.906 16.695 hybrid contribution -0.042 -1.510 -0.177 1.521 sum 8.127 10.008 8.729 15.569 Atomic orbital electron populations 1.20892 0.90743 1.04093 1.02016 1.19691 0.96421 0.91765 0.97106 1.21034 0.94149 0.97538 1.02400 1.20925 0.94212 0.97367 1.00066 1.21308 1.00128 0.91994 1.03975 1.18290 0.89498 0.85195 1.00412 1.84799 1.76096 1.36450 1.34085 1.20058 0.92561 0.95648 1.00968 1.20965 0.98887 0.92448 0.91470 1.62055 1.12458 1.38357 1.12496 1.22126 0.91010 0.97239 0.96239 1.21692 0.99280 1.00972 0.93634 1.21649 0.94959 0.93691 1.04532 1.18653 0.92906 0.96518 0.88203 0.94783 1.21147 1.26985 1.14839 0.92372 0.92852 1.24925 0.96283 0.96837 0.95726 1.69890 1.44380 1.41080 0.97370 0.86635 0.81399 0.82810 0.77378 1.20709 1.21294 1.20020 1.22339 0.93448 0.88751 1.01402 0.91502 0.91645 0.89530 0.86040 0.86008 0.85873 0.75424 0.93907 0.90052 0.93182 0.95492 0.92106 0.93564 0.89084 0.95141 0.93072 0.96186 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.19 36.01 0.33 -1.15 16 2 C -0.05 -0.66 5.88 -104.65 -0.62 -1.28 16 3 C -0.13 -1.56 9.70 -39.56 -0.38 -1.95 16 4 C -0.11 -1.20 10.04 -39.61 -0.40 -1.59 16 5 C -0.16 -1.90 9.99 -39.44 -0.39 -2.30 16 6 C 0.11 1.56 5.54 -39.21 -0.22 1.35 16 7 O -0.50 -6.93 12.03 -19.43 -0.23 -7.16 16 8 C -0.09 -1.35 4.89 -104.47 -0.51 -1.86 16 9 C 0.09 1.43 4.14 -4.98 -0.02 1.40 16 10 N -0.53 -9.61 4.59 -236.12 -1.08 -10.69 16 11 C 0.06 1.06 3.98 -3.83 -0.02 1.04 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C -0.11 -2.57 5.02 -26.61 -0.13 -2.71 16 14 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.51 -13.96 8.57 -34.44 -0.29 -14.25 16 17 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.15 11.35 55.43 0.63 -24.52 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.07 1.41 4.68 -3.83 -0.02 1.39 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.09 1.23 6.67 -51.93 -0.35 0.89 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.39 4.43 6.56 45.56 0.30 4.72 16 32 H 0.04 0.71 7.51 -51.93 -0.39 0.32 16 33 H 0.08 1.23 6.55 -51.93 -0.34 0.89 16 34 H 0.05 0.77 4.69 -51.93 -0.24 0.52 16 35 H 0.03 0.46 8.00 -51.93 -0.42 0.05 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.22 8.01 -51.93 -0.42 0.81 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -28.97 325.42 -9.88 -38.85 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.94 Total: 4.03 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -3.14 Total: -21.51 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.46 Total: -35.21 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.23 Total: -7.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.97 -9.88 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.622 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds