Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 119.97459 * 2 1 4 4 C 1.38250 * 120.11168 * 180.02562 * 3 2 1 5 5 C 1.38158 * 120.05410 * 359.97438 * 4 3 2 6 6 C 1.38711 * 119.94786 * 0.03976 * 5 4 3 7 7 O 1.35901 * 120.05828 * 180.02562 * 6 5 4 8 8 C 1.38125 * 119.96685 * 180.02562 * 2 1 3 9 9 C 1.50697 * 120.03032 * 359.70650 * 8 2 1 10 10 N 1.46892 * 109.47413 * 90.00277 * 9 8 2 11 11 C 1.46849 * 111.00552 * 66.04309 * 10 9 8 12 12 C 1.53035 * 109.52474 * 185.84126 * 11 10 9 13 13 C 1.53115 * 109.27830 * 300.82156 * 12 11 10 14 14 C 1.53118 * 109.16214 * 57.65728 * 13 12 11 15 15 H 1.08994 * 109.50629 * 62.28540 * 14 13 12 16 16 C 1.50702 * 109.50332 * 182.36643 * 14 13 12 17 17 H 1.08003 * 120.00168 * 119.99916 * 16 14 13 18 18 C 1.37877 * 119.99748 * 299.99735 * 16 14 13 19 19 N 1.31516 * 120.00290 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99723 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47337 * 90.00118 * 20 18 16 22 22 H 1.48501 * 109.46689 * 209.99972 * 20 18 16 23 23 H 1.48498 * 109.46933 * 329.99286 * 20 18 16 24 24 C 1.46848 * 111.00298 * 190.25754 * 10 9 8 25 25 H 1.08991 * 109.47294 * 269.98009 * 1 2 3 26 26 H 1.09005 * 109.46748 * 29.97601 * 1 2 3 27 27 H 1.09001 * 109.47027 * 149.97162 * 1 2 3 28 28 H 1.07999 * 119.94699 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.96840 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.02403 * 179.97438 * 5 4 3 31 31 H 0.96701 * 113.99785 * 269.95941 * 7 6 5 32 32 H 1.08998 * 109.47107 * 210.00078 * 9 8 2 33 33 H 1.09005 * 109.46849 * 329.99396 * 9 8 2 34 34 H 1.08997 * 109.45832 * 305.85605 * 11 10 9 35 35 H 1.08999 * 109.45524 * 65.82493 * 11 10 9 36 36 H 1.09003 * 109.50363 * 60.76067 * 12 11 10 37 37 H 1.09004 * 109.50119 * 180.87923 * 12 11 10 38 38 H 1.09003 * 109.52444 * 177.55799 * 13 12 11 39 39 H 1.08997 * 109.52230 * 297.68800 * 13 12 11 40 40 H 0.97000 * 120.00090 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.46263 * 294.17443 * 24 10 9 42 42 H 1.09006 * 109.45953 * 54.13661 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2751 0.0070 -0.0005 6 6 3.5845 -1.1960 -0.0008 7 8 4.2657 -2.3719 -0.0003 8 6 2.1969 -1.1966 -0.0005 9 6 1.4434 -2.5016 0.0056 10 7 1.1924 -2.9287 -1.3773 11 6 2.4490 -3.2541 -2.0640 12 6 2.1641 -3.5529 -3.5376 13 6 1.1880 -4.7286 -3.6354 14 6 -0.0933 -4.3829 -2.8716 15 1 -0.5692 -3.5173 -3.3320 16 6 -1.0365 -5.5575 -2.9138 17 1 -1.3574 -6.0258 -1.9949 18 6 -1.4900 -6.0342 -4.1254 19 7 -1.0998 -5.4637 -5.2443 20 14 -2.6599 -7.4897 -4.1777 21 1 -4.0610 -7.0006 -4.1274 22 1 -2.4463 -8.2514 -5.4345 23 1 -2.4019 -8.3741 -3.0130 24 6 0.2571 -4.0601 -1.4173 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 1.6566 2.1324 0.0004 29 1 4.1176 2.1381 -0.0001 30 1 5.3552 0.0101 -0.0014 31 1 4.4628 -2.7127 -0.8836 32 1 2.0347 -3.2602 0.5184 33 1 0.4933 -2.3701 0.5235 34 1 3.1325 -2.4082 -1.9906 35 1 2.9020 -4.1286 -1.5970 36 1 1.7236 -2.6741 -4.0086 37 1 3.0949 -3.8096 -4.0434 38 1 0.9484 -4.9171 -4.6820 39 1 1.6440 -5.6178 -3.2002 40 1 -1.4186 -5.7993 -6.0967 41 1 0.7204 -4.9308 -0.9534 42 1 -0.6513 -3.7996 -0.8740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877622079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = -44.792906 kcal Electronic energy + Delta-G solvation = -21925.805441 eV Core-core repulsion = 18869.389306 eV Total energy + Delta-G solvation = -3056.416135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31374 -39.39589 -37.83681 -35.78764 -34.14660 -32.88252 -31.75517 -30.96819 -27.98811 -26.94841 -26.81472 -23.86732 -23.29581 -22.71609 -21.45523 -20.42901 -18.96156 -18.40670 -17.15034 -17.05050 -16.88099 -16.35011 -15.77115 -15.52767 -15.08898 -14.95466 -14.49011 -14.33280 -14.29781 -14.03081 -13.65087 -13.42870 -13.39575 -12.89479 -12.83168 -12.65608 -12.57563 -12.53684 -12.26142 -12.19242 -11.85738 -11.75394 -11.40891 -11.26183 -10.88206 -10.66726 -10.37607 -9.61394 -9.44191 -9.10694 -8.07416 -6.21481 0.32931 0.41301 1.41743 1.42440 1.52381 2.43097 2.64931 3.13777 3.19773 3.37231 3.82136 3.94295 4.11633 4.13497 4.19681 4.28761 4.40422 4.48431 4.56429 4.59005 4.69996 4.74198 4.77889 4.85659 4.86657 4.94932 4.98846 5.04561 5.09735 5.16326 5.36393 5.38034 5.47794 5.51570 5.55375 5.63798 5.73786 5.94877 5.98731 6.11940 6.20664 6.29007 6.45774 6.73295 6.90841 7.46463 8.97136 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.004456 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.083921 B = 6282.023183 C = 6635.098962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.100 4.100 5 C -0.160 4.160 6 C 0.096 3.904 7 O -0.511 6.511 8 C -0.115 4.115 9 C 0.098 3.902 10 N -0.534 5.534 11 C 0.068 3.932 12 C -0.110 4.110 13 C -0.103 4.103 14 C 0.055 3.945 15 H -0.003 1.003 16 C -0.536 4.536 17 H 0.051 0.949 18 C 0.016 3.984 19 N -0.915 5.915 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.081 3.919 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.395 0.605 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.014 0.986 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 12.465 9.705 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.153 4.153 4 C -0.118 4.118 5 C -0.178 4.178 6 C 0.051 3.949 7 O -0.325 6.325 8 C -0.116 4.116 9 C -0.029 4.029 10 N -0.259 5.259 11 C -0.060 4.060 12 C -0.148 4.148 13 C -0.142 4.142 14 C 0.036 3.964 15 H 0.015 0.985 16 C -0.575 4.575 17 H 0.069 0.931 18 C -0.183 4.183 19 N -0.554 5.554 20 Si 0.779 3.221 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.046 4.046 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.255 0.745 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.228 12.869 9.872 18.661 hybrid contribution -0.348 -1.851 -0.467 1.940 sum 8.880 11.019 9.405 16.992 Atomic orbital electron populations 1.20862 0.90413 1.03436 1.02726 1.19909 0.96918 0.92141 0.97333 1.21359 0.94734 0.97789 1.01388 1.21339 0.94144 0.98316 0.98045 1.21578 1.01202 0.91643 1.03401 1.18496 0.89385 0.85881 1.01148 1.84780 1.76055 1.36755 1.34878 1.20018 0.93038 0.95230 1.03346 1.20879 0.99189 0.93196 0.89637 1.61987 1.12670 1.36756 1.14445 1.22087 0.90956 0.98473 0.94443 1.21594 0.99132 0.98486 0.95587 1.21453 0.95456 0.95198 1.02050 1.18559 0.92983 0.94300 0.90508 0.98470 1.21515 1.27787 1.15724 0.92453 0.93116 1.25689 0.97812 0.99397 0.95386 1.70032 1.45296 1.42336 0.97768 0.85637 0.79362 0.79642 0.77484 1.20143 1.20896 1.19406 1.22004 0.94304 0.89656 0.98624 0.90131 0.90287 0.92122 0.83576 0.82793 0.84049 0.74545 0.94651 0.89866 0.90642 0.95055 0.93342 0.90957 0.92305 0.95838 0.93077 0.96783 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.19 71.24 0.65 -2.09 16 2 C -0.06 -1.57 5.88 -19.88 -0.12 -1.68 16 3 C -0.13 -2.74 9.70 22.28 0.22 -2.52 16 4 C -0.10 -1.86 10.04 22.25 0.22 -1.64 16 5 C -0.16 -3.44 9.99 22.36 0.22 -3.21 16 6 C 0.10 2.51 5.54 22.51 0.12 2.64 16 7 O -0.51 -13.30 12.03 -92.44 -1.11 -14.41 16 8 C -0.12 -3.26 4.89 -19.77 -0.10 -3.36 16 9 C 0.10 3.08 4.14 85.56 0.35 3.44 16 10 N -0.53 -19.45 4.59 -900.96 -4.14 -23.59 16 11 C 0.07 2.28 3.98 86.32 0.34 2.62 16 12 C -0.11 -4.22 6.09 30.64 0.19 -4.03 16 13 C -0.10 -4.97 5.02 30.67 0.15 -4.81 16 14 C 0.06 2.83 2.26 -11.49 -0.03 2.80 16 15 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 16 C -0.54 -29.90 8.57 25.60 0.22 -29.68 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C 0.02 0.89 5.30 84.65 0.45 1.34 16 19 N -0.91 -53.25 11.35 21.45 0.24 -53.01 16 20 Si 0.95 43.86 29.54 68.60 2.03 45.88 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.08 3.49 4.68 86.32 0.40 3.90 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 1.58 8.09 -2.38 -0.02 1.56 16 27 H 0.06 1.73 6.67 -2.39 -0.02 1.71 16 28 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.40 8.33 6.56 -74.06 -0.49 7.84 16 32 H 0.04 1.16 7.51 -2.39 -0.02 1.14 16 33 H 0.08 2.53 6.55 -2.38 -0.02 2.51 16 34 H 0.08 2.18 4.69 -2.39 -0.01 2.17 16 35 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.06 3.20 6.15 -2.39 -0.01 3.19 16 39 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 2.47 8.01 -2.38 -0.02 2.45 16 Total: -1.00 -63.60 325.42 0.85 -62.74 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.52 Total: 18.68 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 3.31 Total: -36.30 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -3.90 Total: -76.60 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.11 Total: -14.41 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.60 0.85 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.952 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds