Wall clock time and date at job start Mon Mar 30 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48500 * 109.46804 * 269.99908 * 3 2 1 5 5 H 1.48499 * 109.47000 * 29.99994 * 3 2 1 6 6 H 1.48498 * 109.46933 * 149.99995 * 3 2 1 7 7 C 1.37878 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47186 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46857 * 180.02562 * 10 9 7 12 12 C 1.48720 * 111.01831 * 54.49058 * 11 10 9 13 13 C 1.54381 * 104.51692 * 158.96284 * 12 11 10 14 14 C 1.54257 * 105.14978 * 336.27274 * 13 12 11 15 15 C 1.48567 * 110.99718 * 170.00040 * 11 10 9 16 16 H 1.09001 * 110.41003 * 319.73948 * 15 11 10 17 17 C 1.53006 * 110.41197 * 82.17691 * 15 11 10 18 18 H 1.08997 * 109.46847 * 301.63099 * 17 15 11 19 19 O 1.42898 * 109.46622 * 61.63027 * 17 15 11 20 20 C 1.50696 * 109.46966 * 181.62666 * 17 15 11 21 21 C 1.38235 * 119.99987 * 279.73059 * 20 17 15 22 22 C 1.38237 * 119.99938 * 179.74894 * 21 20 17 23 23 C 1.38233 * 119.99999 * 0.52242 * 22 21 20 24 24 C 1.38235 * 119.99708 * 359.75105 * 23 22 21 25 25 C 1.38232 * 120.00320 * 359.97438 * 24 23 22 26 26 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47124 * 59.99837 * 9 7 2 28 28 H 1.09000 * 109.47065 * 299.99675 * 9 7 2 29 29 H 1.09003 * 109.47184 * 59.99920 * 10 9 7 30 30 H 1.09000 * 109.46892 * 299.99828 * 10 9 7 31 31 H 1.09004 * 110.38960 * 40.24251 * 12 11 10 32 32 H 1.08996 * 110.50963 * 277.74694 * 12 11 10 33 33 H 1.09002 * 110.32526 * 217.32092 * 13 12 11 34 34 H 1.08998 * 110.32190 * 95.21733 * 13 12 11 35 35 H 1.08995 * 110.32672 * 118.84838 * 14 13 12 36 36 H 1.09009 * 110.32136 * 241.05045 * 14 13 12 37 37 H 0.96698 * 114.00652 * 59.99455 * 19 17 15 38 38 H 1.08004 * 120.00102 * 359.97438 * 21 20 17 39 39 H 1.07995 * 120.00163 * 180.29530 * 22 21 20 40 40 H 1.07996 * 120.00463 * 179.77387 * 23 22 21 41 41 H 1.08000 * 119.99984 * 180.02562 * 24 23 22 42 42 H 1.08007 * 120.00259 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 0.5462 -4.9926 -1.1305 13 6 0.2739 -6.4991 -1.3294 14 6 1.5098 -7.2129 -0.7441 15 6 2.4276 -6.0781 -0.2409 16 1 3.1654 -5.8206 -1.0009 17 6 3.1209 -6.4894 1.0596 18 1 3.6732 -5.6399 1.4612 19 8 2.1401 -6.9119 2.0090 20 6 4.0742 -7.6235 0.7837 21 6 3.5973 -8.9165 0.6756 22 6 4.4712 -9.9560 0.4174 23 6 5.8232 -9.7041 0.2781 24 6 6.3007 -8.4118 0.3918 25 6 5.4262 -7.3715 0.6444 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8895 31 1 0.9887 -4.5643 -2.0299 32 1 -0.3754 -4.4704 -0.8735 33 1 0.1712 -6.7285 -2.3901 34 1 -0.6255 -6.7958 -0.7898 35 1 1.2173 -7.8586 0.0839 36 1 2.0138 -7.7927 -1.5175 37 1 1.6096 -7.6660 1.7176 38 1 2.5416 -9.1140 0.7892 39 1 4.0980 -10.9656 0.3282 40 1 6.5064 -10.5167 0.0800 41 1 7.3569 -8.2149 0.2825 42 1 5.7994 -6.3619 0.7336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879240897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:18 Heat of formation + Delta-G solvation = -47.634878 kcal Electronic energy + Delta-G solvation = -21408.341328 eV Core-core repulsion = 18351.801956 eV Total energy + Delta-G solvation = -3056.539372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21795 -39.54921 -37.37137 -35.57054 -33.63383 -32.75534 -31.75504 -30.56889 -29.69915 -26.64947 -26.02090 -23.62575 -23.24781 -22.45631 -21.18576 -20.89460 -18.72443 -18.46348 -17.47972 -16.88078 -16.56751 -16.44418 -16.22416 -15.56591 -15.30873 -15.04428 -14.76811 -14.39118 -14.27703 -14.16558 -13.62279 -13.50316 -13.31382 -13.10172 -12.83785 -12.64557 -12.45455 -12.36063 -12.18784 -11.97437 -11.82678 -11.75498 -11.47328 -11.38210 -11.23720 -10.90315 -10.58158 -9.80794 -9.65579 -9.32839 -8.22633 -6.34591 0.40846 0.51012 1.37683 1.39805 1.51020 2.38106 2.79482 3.06866 3.10412 3.51613 3.60520 3.76850 3.85897 3.97298 4.06417 4.13498 4.28367 4.30787 4.33230 4.41416 4.45795 4.52921 4.64285 4.70196 4.81737 4.84901 4.95251 5.00114 5.02379 5.08962 5.12032 5.20369 5.27977 5.41282 5.57135 5.59728 5.63041 5.68164 5.75611 5.98010 6.10134 6.12717 6.28081 6.81421 6.82827 7.34508 8.89518 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.004054 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.858903 B = 6904.659824 C = 7650.162430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.037 3.963 10 C 0.070 3.930 11 N -0.509 5.509 12 C 0.033 3.967 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.034 3.966 16 H 0.048 0.952 17 C 0.169 3.831 18 H 0.082 0.918 19 O -0.554 6.554 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.130 4.130 26 H 0.264 0.736 27 H -0.003 1.003 28 H -0.011 1.011 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.378 0.622 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.734 -22.715 -2.194 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.058 4.058 11 N -0.233 5.233 12 C -0.095 4.095 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.075 4.075 16 H 0.066 0.934 17 C 0.109 3.891 18 H 0.100 0.900 19 O -0.362 6.362 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.008 0.992 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.229 0.771 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.563 -22.143 -1.328 23.779 hybrid contribution 0.380 1.274 -1.033 1.683 sum 8.943 -20.870 -2.361 22.828 Atomic orbital electron populations 1.70106 1.07824 1.27847 1.51262 1.25976 0.95788 1.03361 0.94492 0.85415 0.78633 0.78225 0.78579 1.19570 1.20546 1.18785 1.21606 0.93443 0.92317 1.51187 0.92349 1.18922 0.94111 0.92039 0.95001 1.22115 0.95877 0.89291 0.98537 1.65347 1.14240 1.02053 1.41626 1.23056 0.96470 0.98198 0.91778 1.22289 0.98923 0.92109 1.01945 1.22340 0.94937 0.96280 1.01063 1.23360 0.95081 0.92738 0.96311 0.93369 1.20455 0.86958 0.93587 0.88110 0.90042 1.86664 1.51219 1.54232 1.44118 1.20479 0.94770 0.95593 1.01331 1.21177 1.00899 0.91690 0.99611 1.21466 0.93497 0.99848 0.99027 1.21528 0.96294 0.97117 0.99360 1.21402 1.00388 0.92978 0.99583 1.21203 0.93043 1.00038 1.00552 0.92680 0.98467 0.99241 0.92492 0.96225 0.95318 0.92255 0.89701 0.90128 0.89569 0.89500 0.77111 0.84524 0.83405 0.83670 0.84353 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 0.11 5.46 84.66 0.46 0.58 16 3 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -32.43 9.11 25.60 0.23 -32.19 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.05 4.69 29.85 0.14 2.19 16 10 C 0.07 3.17 4.84 86.30 0.42 3.59 16 11 N -0.51 -19.43 5.09 -856.24 -4.36 -23.79 16 12 C 0.03 1.17 5.12 86.42 0.44 1.61 16 13 C -0.11 -2.81 6.99 31.49 0.22 -2.59 16 14 C -0.11 -2.36 5.15 31.49 0.16 -2.19 16 15 C 0.03 1.00 2.12 45.06 0.10 1.09 16 16 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 17 C 0.17 4.77 3.22 29.85 0.10 4.87 16 18 H 0.08 2.68 7.45 -2.39 -0.02 2.66 16 19 O -0.55 -16.18 13.05 -148.98 -1.94 -18.13 16 20 C -0.12 -2.78 4.89 -19.87 -0.10 -2.88 16 21 C -0.12 -2.09 8.28 22.27 0.18 -1.91 16 22 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 23 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 24 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 25 C -0.13 -2.91 9.67 22.27 0.22 -2.69 16 26 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.00 -0.18 6.84 -2.39 -0.02 -0.19 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 29 H 0.06 2.61 7.65 -2.39 -0.02 2.59 16 30 H 0.02 0.88 7.88 -2.39 -0.02 0.86 16 31 H 0.03 1.07 8.00 -2.38 -0.02 1.05 16 32 H 0.06 2.38 7.68 -2.39 -0.02 2.36 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.52 4.54 -2.39 -0.01 1.51 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.38 8.04 5.47 -74.06 -0.41 7.63 16 38 H 0.14 1.91 5.56 -2.91 -0.02 1.89 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.12 2.62 8.04 -2.91 -0.02 2.60 16 Total: -1.00 -71.30 331.67 -0.15 -71.45 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.60 Total: 16.76 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 3.24 Total: -35.79 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -4.07 Total: -81.63 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.94 Total: -18.13 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.30 -0.15 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879240897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.820 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds