Wall clock time and date at job start Mon Mar 30 2020 01:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47402 * 300.00228 * 3 2 1 6 6 H 1.48504 * 109.46890 * 60.00606 * 3 2 1 7 7 C 1.37886 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47100 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47061 * 185.06343 * 10 9 7 12 12 C 1.47442 * 111.00093 * 293.82260 * 11 10 9 13 13 C 1.54315 * 107.23473 * 236.74314 * 12 11 10 14 14 C 1.55140 * 103.02034 * 337.71522 * 13 12 11 15 15 C 1.47847 * 111.00065 * 172.98310 * 11 10 9 16 16 H 1.09001 * 110.37433 * 27.42082 * 15 11 10 17 17 C 1.53003 * 110.37349 * 265.19417 * 15 11 10 18 18 H 1.09001 * 109.47206 * 180.02562 * 17 15 11 19 19 O 1.42901 * 109.46851 * 299.99472 * 17 15 11 20 20 C 1.50699 * 109.47496 * 59.99727 * 17 15 11 21 21 C 1.38239 * 119.99734 * 279.73065 * 20 17 15 22 22 C 1.38236 * 119.99900 * 179.80491 * 21 20 17 23 23 C 1.38238 * 119.99576 * 0.42202 * 22 21 20 24 24 C 1.38230 * 120.00406 * 359.80550 * 23 22 21 25 25 C 1.38234 * 120.00160 * 0.02562 * 24 23 22 26 26 H 0.97001 * 120.00558 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47068 * 60.00594 * 9 7 2 28 28 H 1.08996 * 109.47414 * 300.00587 * 9 7 2 29 29 H 1.08994 * 109.47360 * 65.06056 * 10 9 7 30 30 H 1.09004 * 109.46798 * 305.06426 * 10 9 7 31 31 H 1.08991 * 109.88795 * 356.15178 * 12 11 10 32 32 H 1.09001 * 109.88825 * 117.34158 * 12 11 10 33 33 H 1.09000 * 110.70934 * 96.09913 * 13 12 11 34 34 H 1.09005 * 110.71000 * 219.33522 * 13 12 11 35 35 H 1.08992 * 110.99477 * 277.56012 * 14 13 12 36 36 H 1.09003 * 110.98935 * 153.74484 * 14 13 12 37 37 H 0.96706 * 113.99924 * 60.00526 * 19 17 15 38 38 H 1.07997 * 120.00269 * 359.97438 * 21 20 17 39 39 H 1.07994 * 120.00203 * 180.20970 * 22 21 20 40 40 H 1.08003 * 119.99555 * 179.78920 * 23 22 21 41 41 H 1.07999 * 120.00322 * 179.97438 * 24 23 22 42 42 H 1.07990 * 120.00809 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5149 -4.9307 -0.1228 12 6 0.6868 -5.1808 1.0712 13 6 1.1156 -6.5467 1.6472 14 6 1.7637 -7.2526 0.4271 15 6 2.4478 -6.0648 -0.2945 16 1 3.4084 -5.8395 0.1687 17 6 2.6349 -6.3803 -1.7799 18 1 3.3240 -7.2177 -1.8895 19 8 1.3733 -6.7238 -2.3564 20 6 3.1964 -5.1717 -2.4834 21 6 2.3592 -4.1345 -2.8501 22 6 2.8749 -3.0240 -3.4918 23 6 4.2262 -2.9547 -3.7747 24 6 5.0625 -3.9939 -3.4123 25 6 4.5475 -5.1029 -2.7674 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8107 -3.6567 0.9312 30 1 2.9301 -3.5546 -0.8417 31 1 0.8552 -4.3974 1.8100 32 1 -0.3666 -5.2103 0.7923 33 1 1.8433 -6.4160 2.4481 34 1 0.2489 -7.1056 2.0001 35 1 1.0051 -7.7105 -0.2075 36 1 2.4991 -7.9903 0.7481 37 1 0.7090 -6.0237 -2.2950 38 1 1.3028 -4.1905 -2.6327 39 1 2.2215 -2.2122 -3.7753 40 1 4.6285 -2.0886 -4.2792 41 1 6.1182 -3.9399 -3.6337 42 1 5.2007 -5.9150 -2.4846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879240899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:22 Heat of formation + Delta-G solvation = -27.293880 kcal Electronic energy + Delta-G solvation = -22380.346340 eV Core-core repulsion = 19324.689020 eV Total energy + Delta-G solvation = -3055.657320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99211 -38.10958 -35.98484 -33.62560 -31.86484 -31.44490 -30.37841 -28.95972 -28.32075 -25.12642 -24.09961 -22.22578 -21.71175 -20.96870 -20.08967 -19.37444 -17.24456 -16.49593 -16.17516 -15.59077 -15.12781 -14.82361 -14.52304 -14.24345 -13.71386 -13.48404 -13.41398 -12.99540 -12.85146 -12.52614 -12.32281 -12.00316 -11.59823 -11.38560 -11.29578 -11.11865 -10.97514 -10.83435 -10.75394 -10.60302 -10.47945 -10.37075 -9.89518 -9.68529 -9.34446 -9.10399 -8.44757 -8.35550 -8.23152 -7.74423 -5.99760 -4.00994 1.72256 1.84390 3.29479 3.37535 3.41562 4.13899 4.34478 4.50544 4.72510 4.84347 4.93477 5.17566 5.22251 5.27093 5.36426 5.38232 5.50185 5.54176 5.61579 5.74076 5.80182 5.90215 5.97116 6.02453 6.12967 6.15368 6.29724 6.36389 6.40087 6.45035 6.50923 6.55527 6.82646 6.96523 7.01319 7.03995 7.40179 7.49292 7.50652 7.77674 7.89696 7.95695 8.08435 8.45012 9.06025 9.62435 11.11466 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.007297 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.013576 B = 3836.530756 C = 5201.015149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.034 3.966 10 C 0.048 3.952 11 N -0.523 5.523 12 C 0.046 3.954 13 C -0.142 4.142 14 C -0.120 4.120 15 C 0.040 3.960 16 H 0.056 0.944 17 C 0.169 3.831 18 H 0.099 0.901 19 O -0.556 6.556 20 C -0.118 4.118 21 C -0.072 4.072 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.122 4.122 26 H 0.259 0.741 27 H 0.024 0.976 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.384 0.616 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -12.690 -3.183 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.078 4.078 11 N -0.248 5.248 12 C -0.082 4.082 13 C -0.180 4.180 14 C -0.158 4.158 15 C -0.070 4.070 16 H 0.074 0.926 17 C 0.109 3.891 18 H 0.116 0.884 19 O -0.363 6.363 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.140 4.140 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.234 0.766 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.380 -13.069 -3.740 14.619 hybrid contribution 0.855 1.751 1.061 2.219 sum 6.235 -11.317 -2.678 13.196 Atomic orbital electron populations 1.69973 1.05920 1.26322 1.51025 1.24951 0.94760 0.98968 0.95482 0.86624 0.80199 0.84157 0.77576 1.19823 1.21003 1.21119 1.21177 0.92860 0.90972 1.50257 0.93015 1.19034 0.93743 0.90146 0.97433 1.22770 0.97411 0.88595 0.99054 1.63451 1.21504 1.02181 1.37671 1.22757 0.98479 0.95383 0.91542 1.22797 1.00443 0.97168 0.97641 1.22655 1.00018 0.96573 0.96541 1.23241 0.96062 0.91985 0.95672 0.92610 1.20599 0.85379 0.93459 0.89690 0.88358 1.86410 1.22657 1.45569 1.81713 1.20435 0.94093 0.97361 0.99918 1.20933 1.00386 0.92429 0.95245 1.21174 0.95381 0.97802 0.98093 1.21108 0.94028 0.98261 1.00414 1.20964 0.99180 0.94445 1.00217 1.20838 0.94581 0.98429 1.00162 0.93155 0.95809 0.97012 0.96867 0.90563 0.92184 0.90890 0.92111 0.91224 0.89734 0.91693 0.76644 0.85397 0.85895 0.86659 0.86812 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.85 4.87 -27.88 -0.14 0.71 16 10 C 0.05 1.00 3.50 -3.83 -0.01 0.98 16 11 N -0.52 -8.84 3.50 -223.39 -0.78 -9.62 16 12 C 0.05 0.75 6.24 -2.84 -0.02 0.73 16 13 C -0.14 -1.84 6.94 -24.91 -0.17 -2.01 16 14 C -0.12 -1.50 6.44 -24.59 -0.16 -1.65 16 15 C 0.04 0.57 2.44 -66.19 -0.16 0.41 16 16 H 0.06 0.85 7.81 -51.93 -0.41 0.44 16 17 C 0.17 2.35 3.21 -27.88 -0.09 2.26 16 18 H 0.10 1.22 8.01 -51.93 -0.42 0.81 16 19 O -0.56 -8.10 12.18 -35.23 -0.43 -8.53 16 20 C -0.12 -1.80 3.82 -104.62 -0.40 -2.20 16 21 C -0.07 -1.21 6.05 -39.58 -0.24 -1.45 16 22 C -0.11 -1.81 9.98 -39.58 -0.40 -2.20 16 23 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 24 C -0.13 -1.85 10.05 -39.59 -0.40 -2.24 16 25 C -0.12 -1.74 9.67 -39.58 -0.38 -2.12 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.01 0.31 7.03 -51.93 -0.36 -0.05 16 29 H 0.01 0.28 8.07 -51.93 -0.42 -0.14 16 30 H 0.08 1.60 4.68 -51.93 -0.24 1.36 16 31 H 0.06 1.09 6.71 -51.93 -0.35 0.74 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.08 7.23 -51.93 -0.38 0.70 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.38 5.46 6.99 45.56 0.32 5.78 16 38 H 0.13 2.21 6.49 -52.49 -0.34 1.87 16 39 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -29.49 329.63 -9.84 -39.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.94 Total: 6.94 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -3.37 Total: -24.00 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.05 Total: -35.26 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.43 Total: -8.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.49 -9.84 -39.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879240899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.039 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds