Wall clock time and date at job start Mon Mar 30 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47402 * 300.00228 * 3 2 1 6 6 H 1.48504 * 109.46890 * 60.00606 * 3 2 1 7 7 C 1.37886 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47100 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47061 * 185.06343 * 10 9 7 12 12 C 1.47442 * 111.00093 * 293.82260 * 11 10 9 13 13 C 1.54315 * 107.23473 * 236.74314 * 12 11 10 14 14 C 1.55140 * 103.02034 * 337.71522 * 13 12 11 15 15 C 1.47847 * 111.00065 * 172.98310 * 11 10 9 16 16 H 1.09001 * 110.37433 * 27.42082 * 15 11 10 17 17 C 1.53003 * 110.37349 * 265.19417 * 15 11 10 18 18 H 1.09001 * 109.47206 * 180.02562 * 17 15 11 19 19 O 1.42901 * 109.46851 * 299.99472 * 17 15 11 20 20 C 1.50699 * 109.47496 * 59.99727 * 17 15 11 21 21 C 1.38239 * 119.99734 * 279.73065 * 20 17 15 22 22 C 1.38236 * 119.99900 * 179.80491 * 21 20 17 23 23 C 1.38238 * 119.99576 * 0.42202 * 22 21 20 24 24 C 1.38230 * 120.00406 * 359.80550 * 23 22 21 25 25 C 1.38234 * 120.00160 * 0.02562 * 24 23 22 26 26 H 0.97001 * 120.00558 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47068 * 60.00594 * 9 7 2 28 28 H 1.08996 * 109.47414 * 300.00587 * 9 7 2 29 29 H 1.08994 * 109.47360 * 65.06056 * 10 9 7 30 30 H 1.09004 * 109.46798 * 305.06426 * 10 9 7 31 31 H 1.08991 * 109.88795 * 356.15178 * 12 11 10 32 32 H 1.09001 * 109.88825 * 117.34158 * 12 11 10 33 33 H 1.09000 * 110.70934 * 96.09913 * 13 12 11 34 34 H 1.09005 * 110.71000 * 219.33522 * 13 12 11 35 35 H 1.08992 * 110.99477 * 277.56012 * 14 13 12 36 36 H 1.09003 * 110.98935 * 153.74484 * 14 13 12 37 37 H 0.96706 * 113.99924 * 60.00526 * 19 17 15 38 38 H 1.07997 * 120.00269 * 359.97438 * 21 20 17 39 39 H 1.07994 * 120.00203 * 180.20970 * 22 21 20 40 40 H 1.08003 * 119.99555 * 179.78920 * 23 22 21 41 41 H 1.07999 * 120.00322 * 179.97438 * 24 23 22 42 42 H 1.07990 * 120.00809 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5149 -4.9307 -0.1228 12 6 0.6868 -5.1808 1.0712 13 6 1.1156 -6.5467 1.6472 14 6 1.7637 -7.2526 0.4271 15 6 2.4478 -6.0648 -0.2945 16 1 3.4084 -5.8395 0.1687 17 6 2.6349 -6.3803 -1.7799 18 1 3.3240 -7.2177 -1.8895 19 8 1.3733 -6.7238 -2.3564 20 6 3.1964 -5.1717 -2.4834 21 6 2.3592 -4.1345 -2.8501 22 6 2.8749 -3.0240 -3.4918 23 6 4.2262 -2.9547 -3.7747 24 6 5.0625 -3.9939 -3.4123 25 6 4.5475 -5.1029 -2.7674 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8107 -3.6567 0.9312 30 1 2.9301 -3.5546 -0.8417 31 1 0.8552 -4.3974 1.8100 32 1 -0.3666 -5.2103 0.7923 33 1 1.8433 -6.4160 2.4481 34 1 0.2489 -7.1056 2.0001 35 1 1.0051 -7.7105 -0.2075 36 1 2.4991 -7.9903 0.7481 37 1 0.7090 -6.0237 -2.2950 38 1 1.3028 -4.1905 -2.6327 39 1 2.2215 -2.2122 -3.7753 40 1 4.6285 -2.0886 -4.2792 41 1 6.1182 -3.9399 -3.6337 42 1 5.2007 -5.9150 -2.4846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879240899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:21 Heat of formation + Delta-G solvation = -45.015728 kcal Electronic energy + Delta-G solvation = -22381.114817 eV Core-core repulsion = 19324.689020 eV Total energy + Delta-G solvation = -3056.425797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21440 -39.32842 -37.20286 -35.53854 -33.56875 -32.64827 -31.57573 -30.28010 -29.95533 -26.51577 -25.83239 -23.47898 -23.18441 -22.16359 -21.43968 -20.76452 -18.61378 -18.33588 -17.42202 -16.89584 -16.52955 -16.36682 -16.07310 -15.57264 -15.06205 -14.75645 -14.72268 -14.41541 -14.15420 -14.05749 -13.66015 -13.50435 -13.11747 -13.01712 -12.75789 -12.60230 -12.43445 -12.35826 -12.08605 -11.98075 -11.78245 -11.69337 -11.51939 -11.25820 -11.13484 -10.85779 -10.54664 -9.65591 -9.47828 -9.13252 -8.19255 -6.28383 0.53075 0.64489 1.36172 1.37143 1.49451 2.38752 2.93152 3.10218 3.14543 3.58006 3.72043 3.83228 4.05322 4.08741 4.13893 4.23365 4.35024 4.38175 4.43358 4.52105 4.60278 4.65425 4.70318 4.76414 4.92184 4.95246 5.02442 5.07260 5.13092 5.19282 5.21066 5.26814 5.42544 5.49234 5.65334 5.68917 5.76155 5.80253 5.83404 6.12592 6.21876 6.25802 6.36333 6.79596 6.87616 7.39655 8.92562 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.007297 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.013576 B = 3836.530756 C = 5201.015149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.049 3.951 10 C 0.072 3.928 11 N -0.526 5.526 12 C 0.041 3.959 13 C -0.132 4.132 14 C -0.109 4.109 15 C 0.038 3.962 16 H 0.055 0.945 17 C 0.172 3.828 18 H 0.126 0.874 19 O -0.560 6.560 20 C -0.125 4.125 21 C -0.088 4.088 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.122 4.122 26 H 0.262 0.738 27 H -0.003 1.003 28 H -0.017 1.017 29 H 0.001 0.999 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.382 0.618 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.145 0.855 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -14.230 -3.072 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.011 3.989 10 C -0.055 4.055 11 N -0.250 5.250 12 C -0.087 4.087 13 C -0.170 4.170 14 C -0.147 4.147 15 C -0.070 4.070 16 H 0.073 0.927 17 C 0.112 3.888 18 H 0.143 0.857 19 O -0.367 6.367 20 C -0.125 4.125 21 C -0.106 4.106 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.140 4.140 26 H 0.071 0.929 27 H 0.016 0.984 28 H 0.002 0.998 29 H 0.019 0.981 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.232 0.768 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.163 0.837 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.635 -14.627 -3.630 16.894 hybrid contribution 0.127 2.215 1.010 2.438 sum 7.762 -12.412 -2.619 14.871 Atomic orbital electron populations 1.70096 1.07535 1.27414 1.51813 1.25810 0.95616 1.02737 0.94952 0.85555 0.79132 0.79533 0.77814 1.18919 1.20282 1.20501 1.21508 0.92928 0.92324 1.50133 0.93201 1.18790 0.93789 0.91660 0.94633 1.22318 0.95947 0.89016 0.98237 1.63352 1.21849 1.01713 1.38091 1.22776 0.98273 0.96876 0.90789 1.22746 1.01417 0.94951 0.97919 1.22632 1.00380 0.95978 0.95678 1.23352 0.95540 0.91605 0.96543 0.92695 1.20744 0.85447 0.93739 0.88847 0.85653 1.86400 1.22955 1.45528 1.81823 1.20650 0.94683 0.97289 0.99882 1.20865 0.99969 0.93392 0.96408 1.21230 0.96450 0.97899 0.99672 1.21355 0.93388 0.99508 1.00561 1.21357 1.00544 0.93688 0.99106 1.21253 0.94363 0.99269 0.99090 0.92928 0.98428 0.99848 0.98051 0.90624 0.94965 0.91375 0.91581 0.89225 0.89695 0.88887 0.76829 0.87159 0.87513 0.85178 0.83711 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.53 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.57 4.87 29.85 0.15 2.72 16 10 C 0.07 3.07 3.50 86.31 0.30 3.37 16 11 N -0.53 -17.95 3.50 -860.69 -3.01 -20.96 16 12 C 0.04 1.34 6.24 86.65 0.54 1.88 16 13 C -0.13 -3.15 6.94 31.77 0.22 -2.92 16 14 C -0.11 -2.38 6.44 31.98 0.21 -2.17 16 15 C 0.04 1.03 2.44 45.38 0.11 1.14 16 16 H 0.05 1.54 7.81 -2.39 -0.02 1.52 16 17 C 0.17 4.41 3.21 29.85 0.10 4.51 16 18 H 0.13 2.60 8.01 -2.39 -0.02 2.58 16 19 O -0.56 -15.59 12.18 -148.98 -1.81 -17.40 16 20 C -0.12 -3.65 3.82 -19.86 -0.08 -3.73 16 21 C -0.09 -3.04 6.05 22.27 0.13 -2.91 16 22 C -0.13 -4.74 9.98 22.27 0.22 -4.51 16 23 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 25 C -0.12 -3.13 9.67 22.27 0.22 -2.91 16 26 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H -0.02 -0.97 7.03 -2.39 -0.02 -0.99 16 29 H 0.00 0.06 8.07 -2.39 -0.02 0.04 16 30 H 0.08 3.24 4.68 -2.38 -0.01 3.22 16 31 H 0.03 1.22 6.71 -2.39 -0.02 1.20 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 1.90 7.23 -2.39 -0.02 1.89 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.38 10.98 6.99 -74.05 -0.52 10.46 16 38 H 0.11 4.08 6.49 -2.91 -0.02 4.07 16 39 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.15 2.76 8.04 -2.92 -0.02 2.74 16 Total: -1.00 -65.16 329.63 1.23 -63.93 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.48 Total: 25.50 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 3.26 Total: -41.61 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.73 Total: -77.19 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.81 Total: -17.40 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.16 1.23 -63.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879240899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.911 kcal (2) G-P(sol) polarization free energy of solvation -65.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds