Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99665 * 2 1 4 4 H 1.48497 * 109.47122 * 269.99798 * 3 2 1 5 5 H 1.48503 * 109.47117 * 30.00074 * 3 2 1 6 6 H 1.48504 * 109.46775 * 149.99561 * 3 2 1 7 7 C 1.37877 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99856 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99957 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46946 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47126 * 180.02562 * 10 9 7 12 12 C 1.48682 * 111.10624 * 285.41503 * 11 10 9 13 13 C 1.54382 * 104.67167 * 201.09938 * 12 11 10 14 14 C 1.54255 * 105.06204 * 23.76966 * 13 12 11 15 15 C 1.48563 * 111.00330 * 169.99915 * 11 10 9 16 16 H 1.09000 * 110.41077 * 40.13597 * 15 11 10 17 17 C 1.52998 * 110.40709 * 277.81458 * 15 11 10 18 18 H 1.09000 * 109.47129 * 62.04677 * 17 15 11 19 19 O 1.42895 * 109.47413 * 302.03933 * 17 15 11 20 20 C 1.50703 * 109.46664 * 182.04487 * 17 15 11 21 21 C 1.38244 * 119.99893 * 264.99698 * 20 17 15 22 22 C 1.38230 * 119.99852 * 179.97438 * 21 20 17 23 23 C 1.38236 * 120.00223 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.99726 * 0.27398 * 23 22 21 25 25 C 1.38233 * 120.00252 * 84.97869 * 20 17 15 26 26 H 0.97000 * 120.00364 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47023 * 59.99839 * 9 7 2 28 28 H 1.09000 * 109.47013 * 300.00298 * 9 7 2 29 29 H 1.08994 * 109.47656 * 59.99634 * 10 9 7 30 30 H 1.09007 * 109.46988 * 299.99586 * 10 9 7 31 31 H 1.08995 * 110.44233 * 82.25946 * 12 11 10 32 32 H 1.08997 * 110.30295 * 319.86575 * 12 11 10 33 33 H 1.08996 * 110.32064 * 264.87396 * 13 12 11 34 34 H 1.08997 * 110.31854 * 142.66918 * 13 12 11 35 35 H 1.09002 * 110.32992 * 241.10682 * 14 13 12 36 36 H 1.08998 * 110.41241 * 118.94200 * 14 13 12 37 37 H 0.96700 * 114.00409 * 294.67307 * 19 17 15 38 38 H 1.08004 * 119.99821 * 359.97438 * 21 20 17 39 39 H 1.08001 * 119.99930 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.99823 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.99577 * 179.72136 * 24 23 22 42 42 H 1.07999 * 119.99989 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4906 -2.6363 0.0022 12 6 6.0270 -2.2671 -1.3344 13 6 7.4678 -2.8218 -1.3443 14 6 7.4650 -3.9632 -0.3067 15 6 6.0229 -4.0023 0.2430 16 1 5.4305 -4.7416 -0.2961 17 6 6.0309 -4.3154 1.7405 18 1 5.0100 -4.2928 2.1219 19 8 6.8177 -3.3399 2.4270 20 6 6.6205 -5.6841 1.9643 21 6 5.7909 -6.7845 2.0745 22 6 6.3318 -8.0400 2.2792 23 6 7.7022 -8.1954 2.3732 24 6 8.5314 -7.0944 2.2681 25 6 7.9908 -5.8394 2.0589 26 1 -0.4851 0.8400 -0.0004 27 1 3.8745 -0.6798 0.8911 28 1 3.8752 -0.6802 -0.8888 29 1 3.6586 -3.1501 -0.8891 30 1 3.6580 -3.1504 0.8908 31 1 6.0359 -1.1839 -1.4551 32 1 5.4348 -2.7335 -2.1217 33 1 8.1743 -2.0454 -1.0512 34 1 7.7176 -3.2087 -2.3322 35 1 8.1702 -3.7471 0.4959 36 1 7.7142 -4.9111 -0.7836 37 1 7.7567 -3.3590 2.1968 38 1 4.7203 -6.6632 2.0007 39 1 5.6837 -8.8997 2.3650 40 1 8.1247 -9.1764 2.5327 41 1 9.6018 -7.2152 2.3460 42 1 8.6389 -4.9798 1.9729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879240902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = -45.742431 kcal Electronic energy + Delta-G solvation = -21476.963053 eV Core-core repulsion = 18420.505744 eV Total energy + Delta-G solvation = -3056.457309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21638 -39.53697 -37.34494 -35.56602 -33.78465 -32.75594 -31.76547 -30.86348 -29.86704 -26.63826 -25.93410 -23.53925 -22.90445 -22.48343 -21.37202 -20.87675 -19.05523 -18.61533 -17.39641 -16.89694 -16.49163 -16.36562 -16.19383 -15.57066 -15.38179 -15.04738 -14.84709 -14.59573 -14.34338 -14.12677 -13.75190 -13.54108 -13.41643 -13.23344 -12.89648 -12.68312 -12.41910 -12.16880 -12.01138 -11.84686 -11.81705 -11.67926 -11.55109 -11.44168 -11.39680 -10.92757 -10.78394 -9.81960 -9.66045 -9.34610 -8.32522 -6.36840 0.39932 0.49832 1.33100 1.36377 1.50235 2.34758 2.77964 3.02850 3.03349 3.51035 3.59834 3.76309 3.84240 3.96177 4.06448 4.11626 4.28154 4.30210 4.33041 4.39260 4.41788 4.49660 4.63130 4.69273 4.80535 4.84322 4.93983 4.98889 5.01616 5.07398 5.11526 5.18824 5.25408 5.28771 5.42618 5.56177 5.60459 5.62270 5.66561 6.00724 6.09047 6.11745 6.26184 6.69969 6.84367 7.28142 8.84191 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.004238 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.817856 B = 6604.766501 C = 7146.565398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.535 4.535 8 H 0.031 0.969 9 C 0.007 3.993 10 C 0.074 3.926 11 N -0.508 5.508 12 C 0.025 3.975 13 C -0.114 4.114 14 C -0.108 4.108 15 C 0.035 3.965 16 H 0.047 0.953 17 C 0.167 3.833 18 H 0.078 0.922 19 O -0.552 6.552 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.268 0.732 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.378 0.622 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.895 -14.878 1.344 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.031 4.031 10 C -0.054 4.054 11 N -0.231 5.231 12 C -0.103 4.103 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.074 4.074 16 H 0.065 0.935 17 C 0.107 3.893 18 H 0.096 0.904 19 O -0.360 6.360 20 C -0.121 4.121 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.133 4.133 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.228 0.772 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 22.328 -14.238 2.018 26.558 hybrid contribution -0.776 0.064 -0.891 1.184 sum 21.552 -14.175 1.126 25.820 Atomic orbital electron populations 1.70055 1.08191 1.28252 1.52466 1.25955 0.95609 1.03411 0.93900 0.85642 0.79387 0.78245 0.79305 1.18847 1.20629 1.17610 1.21408 0.91868 0.93221 1.50802 0.95037 1.19317 0.93316 0.94127 0.96349 1.21950 0.86897 0.97784 0.98757 1.65309 1.07466 1.22475 1.27893 1.23222 0.96475 1.01086 0.89502 1.22275 0.94853 0.98133 0.99907 1.22304 0.94097 0.99283 0.98898 1.23296 0.97620 0.90373 0.96105 0.93477 1.20470 0.94365 0.84050 0.90405 0.90387 1.86684 1.23876 1.57691 1.67740 1.20468 0.95199 0.95033 1.01376 1.21183 0.99879 0.93219 1.00689 1.21396 0.96306 0.96996 0.99614 1.21526 0.93346 1.00069 0.99358 1.21463 1.01217 0.92047 0.98959 1.21138 0.93600 0.98775 0.99835 0.92364 0.96507 0.96655 0.96203 0.92822 0.91045 0.94715 0.89951 0.89679 0.89733 0.89909 0.77172 0.86611 0.84465 0.83676 0.83336 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 2 C 0.01 0.50 5.47 84.66 0.46 0.97 16 3 Si 0.95 46.42 27.47 68.60 1.88 48.31 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 7 C -0.53 -32.40 9.66 25.60 0.25 -32.15 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 9 C 0.01 0.34 4.16 29.85 0.12 0.47 16 10 C 0.07 3.21 4.72 86.30 0.41 3.61 16 11 N -0.51 -17.74 4.88 -856.39 -4.18 -21.91 16 12 C 0.02 0.75 5.93 86.43 0.51 1.27 16 13 C -0.11 -2.37 7.00 31.49 0.22 -2.15 16 14 C -0.11 -2.14 5.29 31.49 0.17 -1.98 16 15 C 0.03 0.97 2.14 45.06 0.10 1.06 16 16 H 0.05 1.38 7.99 -2.39 -0.02 1.37 16 17 C 0.17 4.62 3.18 29.85 0.10 4.72 16 18 H 0.08 2.58 7.23 -2.39 -0.02 2.56 16 19 O -0.55 -15.70 12.98 -148.98 -1.93 -17.63 16 20 C -0.12 -2.70 4.80 -19.86 -0.10 -2.79 16 21 C -0.13 -2.93 9.68 22.27 0.22 -2.71 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 25 C -0.12 -2.00 8.22 22.27 0.18 -1.82 16 26 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 27 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 28 H 0.02 0.75 6.91 -2.39 -0.02 0.73 16 29 H 0.02 0.87 7.77 -2.39 -0.02 0.85 16 30 H 0.05 2.39 7.19 -2.38 -0.02 2.37 16 31 H 0.07 2.27 7.86 -2.39 -0.02 2.25 16 32 H 0.03 1.08 7.75 -2.39 -0.02 1.06 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.36 4.73 -2.39 -0.01 1.35 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.38 7.57 5.47 -74.06 -0.41 7.16 16 38 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.14 1.78 5.50 -2.91 -0.02 1.77 16 Total: -1.00 -72.85 328.99 -0.08 -72.93 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.54 Total: 15.79 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.31 Total: -36.63 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.88 Total: -82.77 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.93 Total: -17.63 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.88 Total: 48.31 kcal Total: -72.85 -0.08 -72.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879240902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.190 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds