Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47628 * 270.00163 * 3 2 1 5 5 H 1.48503 * 109.47065 * 30.00446 * 3 2 1 6 6 H 1.48500 * 109.47342 * 149.99786 * 3 2 1 7 7 C 1.37877 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00189 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99939 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47083 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47370 * 65.00041 * 12 11 10 14 14 C 1.39675 * 120.00430 * 83.62541 * 13 12 11 15 15 C 1.38910 * 120.07143 * 3.16734 * 14 13 12 16 16 C 1.38107 * 119.92408 * 180.27813 * 15 14 13 17 17 C 1.38288 * 120.07384 * 359.51452 * 16 15 14 18 18 C 1.38284 * 120.14699 * 0.46682 * 17 16 15 19 19 C 1.38103 * 120.07653 * 359.78854 * 18 17 16 20 20 C 1.46504 * 119.99691 * 263.62236 * 13 12 11 21 21 C 1.53776 * 113.61695 * 342.47404 * 20 13 12 22 22 C 1.53956 * 87.02035 * 220.04804 * 21 20 13 23 23 C 1.53776 * 87.11100 * 25.36231 * 22 21 20 24 24 H 0.96994 * 119.99307 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47286 * 60.00211 * 9 7 2 26 26 H 1.09004 * 109.47162 * 299.99716 * 9 7 2 27 27 H 1.08999 * 109.47298 * 59.99759 * 11 10 9 28 28 H 1.09001 * 109.47247 * 300.00040 * 11 10 9 29 29 H 1.09002 * 109.47187 * 304.99543 * 12 11 10 30 30 H 1.09002 * 109.46909 * 185.00066 * 12 11 10 31 31 H 1.07999 * 120.04106 * 0.02562 * 15 14 13 32 32 H 1.07995 * 119.96108 * 179.72552 * 16 15 14 33 33 H 1.07996 * 119.92426 * 180.20653 * 17 16 15 34 34 H 1.07998 * 119.96278 * 179.76719 * 18 17 16 35 35 H 1.08007 * 120.03666 * 179.97438 * 19 18 17 36 36 H 1.09003 * 112.84931 * 113.67175 * 20 13 12 37 37 H 1.09000 * 113.61539 * 334.56868 * 21 20 13 38 38 H 1.09004 * 113.61735 * 105.46864 * 21 20 13 39 39 H 1.09000 * 113.53440 * 270.80913 * 22 21 20 40 40 H 1.08998 * 113.74303 * 139.94253 * 22 21 20 41 41 H 1.09003 * 113.61243 * 220.09269 * 23 22 21 42 42 H 1.08992 * 113.69223 * 89.19772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5854 -0.0027 11 6 1.5651 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 7 3.4059 -5.8886 1.2482 14 6 2.9213 -6.5249 2.3933 15 6 1.7551 -7.2770 2.3310 16 6 1.2756 -7.9001 3.4664 17 6 1.9606 -7.7842 4.6621 18 6 3.1221 -7.0366 4.7275 19 6 3.6042 -6.4066 3.5971 20 6 4.6722 -5.1536 1.2990 21 6 5.2817 -4.8801 -0.0861 22 6 6.6508 -5.1968 0.5427 23 6 5.8927 -6.0475 1.5753 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 0.9446 -4.9820 -0.8930 28 1 0.9452 -4.9830 0.8869 29 1 3.3215 -5.7954 -0.8454 30 1 2.1819 -6.9375 -0.0936 31 1 1.2217 -7.3710 1.3966 32 1 0.3666 -8.4813 3.4196 33 1 1.5852 -8.2752 5.5477 34 1 3.6526 -6.9451 5.6638 35 1 4.5113 -5.8225 3.6490 36 1 4.6240 -4.2710 1.9368 37 1 4.9746 -5.5970 -0.8476 38 1 5.1787 -3.8450 -0.4119 39 1 7.1443 -4.3252 0.9728 40 1 7.3071 -5.7783 -0.1047 41 1 6.2822 -5.9534 2.5890 42 1 5.7524 -7.0844 1.2703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879260444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = 6.488980 kcal Electronic energy + Delta-G solvation = -21528.003816 eV Core-core repulsion = 18473.811431 eV Total energy + Delta-G solvation = -3054.192385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97303 -38.10342 -36.76591 -34.61964 -32.69897 -30.95942 -30.06231 -28.20958 -26.87798 -25.51763 -24.49122 -22.74183 -22.21195 -21.83485 -20.71620 -18.87593 -17.50555 -16.41774 -16.30835 -15.67894 -15.42182 -15.24390 -14.54277 -14.33952 -14.08951 -13.75952 -13.73916 -13.19346 -13.04158 -12.68774 -12.35220 -12.07828 -11.89481 -11.62349 -11.42395 -11.22791 -11.05929 -10.86918 -10.85339 -10.58691 -10.52231 -10.50462 -10.15089 -10.08170 -9.45158 -9.11084 -8.82445 -8.69126 -8.16319 -6.97753 -6.11483 -4.13203 1.66848 1.86617 3.28644 3.33835 3.35862 3.38676 4.13657 4.33349 4.63343 4.74022 4.82868 4.90423 5.01425 5.13808 5.18490 5.25035 5.37985 5.44807 5.56636 5.66881 5.73902 5.75902 5.82936 5.86745 5.90353 5.94862 5.99260 6.05773 6.16596 6.24921 6.29100 6.31238 6.52069 6.60418 6.70385 6.84483 7.10636 7.12814 7.43551 7.58725 7.77489 7.82802 8.15237 8.58369 8.99852 9.51606 11.00135 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.004978 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.699002 B = 5623.742210 C = 6369.420013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.387 6.387 11 C 0.042 3.958 12 C 0.121 3.879 13 N -0.605 5.605 14 C 0.231 3.769 15 C -0.203 4.203 16 C -0.074 4.074 17 C -0.192 4.192 18 C -0.075 4.075 19 C -0.196 4.196 20 C 0.143 3.857 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.151 4.151 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -15.754 3.885 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.307 6.307 11 C -0.037 4.037 12 C -0.002 4.002 13 N -0.312 5.312 14 C 0.127 3.873 15 C -0.226 4.226 16 C -0.093 4.093 17 C -0.212 4.212 18 C -0.094 4.094 19 C -0.219 4.219 20 C 0.039 3.961 21 C -0.174 4.174 22 C -0.180 4.180 23 C -0.189 4.189 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.364 -15.491 3.702 17.990 hybrid contribution -0.204 1.005 0.031 1.026 sum 8.160 -14.486 3.734 17.040 Atomic orbital electron populations 1.69968 1.06109 1.27108 1.50565 1.24945 0.94952 0.99393 0.95202 0.86362 0.79671 0.82408 0.78200 1.20473 1.21078 1.19674 1.21014 0.93888 0.89352 1.50737 0.91711 1.20156 0.88787 0.83681 0.95132 1.87846 1.35093 1.12585 1.95138 1.22748 0.94988 0.86656 0.99275 1.21588 0.94309 0.97335 0.86979 1.46527 1.22495 1.54625 1.07583 1.17825 0.92221 0.90488 0.86732 1.20672 0.98255 1.04249 0.99390 1.20816 0.98410 0.97615 0.92447 1.20785 0.97900 1.04681 0.97825 1.20828 0.95631 0.95671 0.97250 1.20680 1.02898 1.06419 0.91884 1.22385 0.80979 0.94150 0.98540 1.23198 0.94694 1.03327 0.96137 1.22748 0.96480 1.00099 0.98640 1.23437 0.96863 0.99283 0.99349 0.92678 0.97991 0.97998 0.94102 0.94303 0.89448 0.90523 0.86379 0.86719 0.87072 0.86761 0.86264 0.89083 0.89729 0.89813 0.90021 0.91369 0.91492 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -15.01 9.43 -34.44 -0.32 -15.34 16 8 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.20 5.43 5.69 36.00 0.20 5.63 16 10 O -0.39 -9.10 10.27 -35.23 -0.36 -9.46 16 11 C 0.04 0.78 6.23 37.16 0.23 1.02 16 12 C 0.12 1.77 5.25 -4.05 -0.02 1.75 16 13 N -0.60 -9.15 2.80 -163.27 -0.46 -9.61 16 14 C 0.23 3.51 6.39 -83.79 -0.54 2.97 16 15 C -0.20 -2.90 8.90 -39.38 -0.35 -3.25 16 16 C -0.07 -0.96 10.04 -39.61 -0.40 -1.36 16 17 C -0.19 -2.42 10.04 -39.55 -0.40 -2.82 16 18 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 19 C -0.20 -2.81 8.89 -39.38 -0.35 -3.16 16 20 C 0.14 2.06 3.43 -67.12 -0.23 1.83 16 21 C -0.14 -1.82 6.87 -25.83 -0.18 -2.00 16 22 C -0.14 -1.56 8.09 -25.83 -0.21 -1.77 16 23 C -0.15 -1.74 6.57 -25.92 -0.17 -1.91 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.76 7.83 -51.93 -0.41 0.35 16 29 H 0.09 1.22 5.36 -51.93 -0.28 0.94 16 30 H 0.08 0.94 6.43 -51.93 -0.33 0.61 16 31 H 0.12 1.56 6.21 -52.49 -0.33 1.23 16 32 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.62 5.75 -52.48 -0.30 1.31 16 36 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 37 H 0.08 1.07 6.21 -51.93 -0.32 0.74 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.72 7.41 -51.93 -0.38 0.34 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -31.36 339.17 -9.76 -41.12 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.55 Total: 0.58 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.22 Total: -18.24 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.28 Total: -35.99 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.36 Total: -9.46 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.36 -9.76 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879260444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.613 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds