Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47628 * 270.00163 * 3 2 1 5 5 H 1.48503 * 109.47065 * 30.00446 * 3 2 1 6 6 H 1.48500 * 109.47342 * 149.99786 * 3 2 1 7 7 C 1.37877 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00189 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99939 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47083 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47370 * 65.00041 * 12 11 10 14 14 C 1.39675 * 120.00430 * 83.62541 * 13 12 11 15 15 C 1.38910 * 120.07143 * 3.16734 * 14 13 12 16 16 C 1.38107 * 119.92408 * 180.27813 * 15 14 13 17 17 C 1.38288 * 120.07384 * 359.51452 * 16 15 14 18 18 C 1.38284 * 120.14699 * 0.46682 * 17 16 15 19 19 C 1.38103 * 120.07653 * 359.78854 * 18 17 16 20 20 C 1.46504 * 119.99691 * 263.62236 * 13 12 11 21 21 C 1.53776 * 113.61695 * 342.47404 * 20 13 12 22 22 C 1.53956 * 87.02035 * 220.04804 * 21 20 13 23 23 C 1.53776 * 87.11100 * 25.36231 * 22 21 20 24 24 H 0.96994 * 119.99307 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47286 * 60.00211 * 9 7 2 26 26 H 1.09004 * 109.47162 * 299.99716 * 9 7 2 27 27 H 1.08999 * 109.47298 * 59.99759 * 11 10 9 28 28 H 1.09001 * 109.47247 * 300.00040 * 11 10 9 29 29 H 1.09002 * 109.47187 * 304.99543 * 12 11 10 30 30 H 1.09002 * 109.46909 * 185.00066 * 12 11 10 31 31 H 1.07999 * 120.04106 * 0.02562 * 15 14 13 32 32 H 1.07995 * 119.96108 * 179.72552 * 16 15 14 33 33 H 1.07996 * 119.92426 * 180.20653 * 17 16 15 34 34 H 1.07998 * 119.96278 * 179.76719 * 18 17 16 35 35 H 1.08007 * 120.03666 * 179.97438 * 19 18 17 36 36 H 1.09003 * 112.84931 * 113.67175 * 20 13 12 37 37 H 1.09000 * 113.61539 * 334.56868 * 21 20 13 38 38 H 1.09004 * 113.61735 * 105.46864 * 21 20 13 39 39 H 1.09000 * 113.53440 * 270.80913 * 22 21 20 40 40 H 1.08998 * 113.74303 * 139.94253 * 22 21 20 41 41 H 1.09003 * 113.61243 * 220.09269 * 23 22 21 42 42 H 1.08992 * 113.69223 * 89.19772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5854 -0.0027 11 6 1.5651 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 7 3.4059 -5.8886 1.2482 14 6 2.9213 -6.5249 2.3933 15 6 1.7551 -7.2770 2.3310 16 6 1.2756 -7.9001 3.4664 17 6 1.9606 -7.7842 4.6621 18 6 3.1221 -7.0366 4.7275 19 6 3.6042 -6.4066 3.5971 20 6 4.6722 -5.1536 1.2990 21 6 5.2817 -4.8801 -0.0861 22 6 6.6508 -5.1968 0.5427 23 6 5.8927 -6.0475 1.5753 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 0.9446 -4.9820 -0.8930 28 1 0.9452 -4.9830 0.8869 29 1 3.3215 -5.7954 -0.8454 30 1 2.1819 -6.9375 -0.0936 31 1 1.2217 -7.3710 1.3966 32 1 0.3666 -8.4813 3.4196 33 1 1.5852 -8.2752 5.5477 34 1 3.6526 -6.9451 5.6638 35 1 4.5113 -5.8225 3.6490 36 1 4.6240 -4.2710 1.9368 37 1 4.9746 -5.5970 -0.8476 38 1 5.1787 -3.8450 -0.4119 39 1 7.1443 -4.3252 0.9728 40 1 7.3071 -5.7783 -0.1047 41 1 6.2822 -5.9534 2.5890 42 1 5.7524 -7.0844 1.2703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879260444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = -10.325534 kcal Electronic energy + Delta-G solvation = -21528.732948 eV Core-core repulsion = 18473.811431 eV Total energy + Delta-G solvation = -3054.921517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06289 -39.12762 -38.53679 -35.88412 -34.85150 -32.11006 -31.27481 -29.66130 -28.71256 -26.57697 -25.61775 -24.54913 -23.83429 -22.91168 -21.78592 -19.97361 -18.73354 -18.52380 -17.52985 -17.30575 -16.67322 -16.44338 -16.34228 -15.95129 -15.35689 -15.07971 -14.93095 -14.53799 -14.23705 -13.83568 -13.80292 -13.40902 -13.36699 -13.02539 -12.84193 -12.72650 -12.67066 -12.36508 -12.22016 -12.11596 -11.88048 -11.60189 -11.51858 -11.30346 -11.16979 -10.89071 -10.56925 -10.23631 -9.73495 -8.34950 -8.10184 -6.47244 0.62481 0.81114 1.36844 1.39874 1.51618 2.23778 2.31995 2.99168 3.07474 3.19169 3.60833 3.74576 3.89037 3.98276 4.07261 4.20007 4.22587 4.27594 4.41287 4.48241 4.53520 4.67386 4.69544 4.73891 4.78178 4.82056 4.88300 4.94835 4.98550 5.06018 5.13439 5.14676 5.20161 5.26664 5.47170 5.51553 5.55811 5.68410 5.81792 5.93229 6.11175 6.45561 6.50927 6.71053 6.80755 7.24868 8.77837 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.004978 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.699002 B = 5623.742210 C = 6369.420013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.213 3.787 10 O -0.393 6.393 11 C 0.035 3.965 12 C 0.129 3.871 13 N -0.612 5.612 14 C 0.207 3.793 15 C -0.218 4.218 16 C -0.080 4.080 17 C -0.194 4.194 18 C -0.081 4.081 19 C -0.211 4.211 20 C 0.130 3.870 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.270 0.730 25 H -0.016 1.016 26 H -0.027 1.027 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 -16.490 4.284 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.138 3.862 10 O -0.312 6.312 11 C -0.043 4.043 12 C 0.006 3.994 13 N -0.320 5.320 14 C 0.105 3.895 15 C -0.240 4.240 16 C -0.099 4.099 17 C -0.214 4.214 18 C -0.099 4.099 19 C -0.234 4.234 20 C 0.026 3.974 21 C -0.176 4.176 22 C -0.166 4.166 23 C -0.171 4.171 24 H 0.079 0.921 25 H 0.002 0.998 26 H -0.010 1.010 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.586 -16.259 4.111 19.317 hybrid contribution -0.678 1.151 -0.030 1.336 sum 8.908 -15.107 4.081 18.007 Atomic orbital electron populations 1.70083 1.07850 1.28609 1.50606 1.25971 0.95922 1.03427 0.93939 0.85196 0.78340 0.77036 0.78943 1.19033 1.20042 1.18882 1.21327 0.93956 0.90664 1.52039 0.92019 1.19737 0.88632 0.85074 0.92764 1.87823 1.34624 1.13733 1.95065 1.23086 0.96696 0.85417 0.99099 1.21585 0.93449 0.96923 0.87441 1.46592 1.22786 1.54867 1.07763 1.18099 0.93026 0.91290 0.87078 1.20886 0.98206 1.04600 1.00329 1.21165 0.99179 0.97377 0.92172 1.21157 0.97501 1.04100 0.98616 1.21164 0.95941 0.95111 0.97710 1.20857 1.03248 1.06971 0.92280 1.22421 0.82052 0.94109 0.98800 1.23205 0.96632 1.01824 0.95932 1.22711 0.95403 1.00244 0.98211 1.23291 0.94869 0.98903 1.00043 0.92087 0.99832 1.00967 0.93046 0.95623 0.88565 0.87544 0.85850 0.84435 0.84611 0.84503 0.86232 0.92289 0.88739 0.92681 0.89753 0.89241 0.90692 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.98 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -32.71 9.43 25.60 0.24 -32.47 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.30 5.69 71.24 0.41 12.71 16 10 O -0.39 -19.22 10.27 -148.98 -1.53 -20.75 16 11 C 0.04 1.35 6.23 71.98 0.45 1.80 16 12 C 0.13 3.74 5.25 86.38 0.45 4.20 16 13 N -0.61 -18.58 2.80 -670.46 -1.88 -20.46 16 14 C 0.21 6.27 6.39 38.21 0.24 6.51 16 15 C -0.22 -6.05 8.90 22.40 0.20 -5.85 16 16 C -0.08 -1.96 10.04 22.25 0.22 -1.73 16 17 C -0.19 -4.50 10.04 22.29 0.22 -4.27 16 18 C -0.08 -1.98 10.04 22.25 0.22 -1.75 16 19 C -0.21 -5.97 8.89 22.40 0.20 -5.77 16 20 C 0.13 3.81 3.43 45.52 0.16 3.96 16 21 C -0.14 -3.71 6.87 31.18 0.21 -3.49 16 22 C -0.13 -2.63 8.09 31.18 0.25 -2.38 16 23 C -0.13 -2.91 6.57 31.12 0.20 -2.70 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H -0.03 -1.70 8.14 -2.38 -0.02 -1.72 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 1.04 7.83 -2.39 -0.02 1.02 16 29 H 0.10 2.62 5.36 -2.39 -0.01 2.60 16 30 H 0.11 2.46 6.43 -2.39 -0.02 2.45 16 31 H 0.12 3.16 6.21 -2.91 -0.02 3.14 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.12 3.25 5.75 -2.91 -0.02 3.24 16 36 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 37 H 0.09 2.31 6.21 -2.39 -0.01 2.29 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.52 7.41 -2.39 -0.02 1.50 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -68.88 339.17 4.04 -64.84 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.99 Total: 16.76 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.15 Total: -30.45 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -1.60 Total: -77.29 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.53 Total: -20.75 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.88 4.04 -64.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879260444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.515 kcal (2) G-P(sol) polarization free energy of solvation -68.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds