Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.56087 * 113.67653 * 2 1 4 4 N 1.48082 * 104.83311 * 261.10201 * 3 2 1 5 5 C 1.34771 * 127.84910 * 139.68444 * 4 3 2 6 6 O 1.21284 * 120.00497 * 0.02690 * 5 4 3 7 7 C 1.50707 * 120.00296 * 180.02562 * 5 4 3 8 8 C 1.52994 * 109.47147 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47036 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99665 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00616 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00490 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99461 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46564 * 90.00424 * 13 11 9 15 15 H 1.48493 * 109.46970 * 210.00254 * 13 11 9 16 16 H 1.48495 * 109.47419 * 330.00771 * 13 11 9 17 17 C 1.48074 * 104.29986 * 319.68680 * 4 3 2 18 18 C 1.54249 * 104.80246 * 39.94779 * 17 4 3 19 19 H 1.08989 * 113.04057 * 100.41810 * 18 17 4 20 20 C 1.56103 * 107.89651 * 226.22201 * 18 17 4 21 21 H 1.09002 * 116.23210 * 274.50093 * 20 18 17 22 22 C 1.53355 * 104.15250 * 43.79596 * 20 18 17 23 23 C 1.33813 * 107.34674 * 70.90044 * 22 20 18 24 24 C 1.53348 * 108.69690 * 359.48832 * 23 22 20 25 25 H 1.08997 * 116.28210 * 160.82098 * 24 23 22 26 26 C 1.57215 * 100.49132 * 147.72229 * 20 18 17 27 27 H 1.09000 * 109.47084 * 178.11254 * 1 2 3 28 28 H 1.09000 * 109.46890 * 298.10964 * 1 2 3 29 29 H 1.08995 * 109.47316 * 58.10852 * 1 2 3 30 30 H 1.09006 * 110.65036 * 142.11424 * 3 2 1 31 31 H 1.09000 * 110.15607 * 19.84610 * 3 2 1 32 32 H 1.08997 * 109.47075 * 300.00263 * 7 5 4 33 33 H 1.09003 * 109.46315 * 59.99891 * 7 5 4 34 34 H 1.08997 * 109.47424 * 300.00143 * 8 7 5 35 35 H 1.08997 * 109.47406 * 60.00326 * 8 7 5 36 36 H 0.96998 * 119.99645 * 179.97438 * 12 11 9 37 37 H 1.09002 * 110.37280 * 281.11702 * 17 4 3 38 38 H 1.09003 * 110.46749 * 158.82814 * 17 4 3 39 39 H 1.08001 * 125.78422 * 251.08600 * 22 20 18 40 40 H 1.07995 * 125.50731 * 179.82250 * 23 22 20 41 41 H 1.09007 * 112.52279 * 58.09478 * 26 20 18 42 42 H 1.09005 * 112.52330 * 185.95229 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1568 1.4295 0.0000 4 7 2.5118 1.6878 -1.4142 5 6 2.3727 2.8364 -2.1053 6 8 1.9073 3.8171 -1.5643 7 6 2.7953 2.9025 -3.5504 8 6 2.5321 4.3078 -4.0949 9 6 2.9542 4.3736 -5.5402 10 1 3.3690 3.5005 -6.0218 11 6 2.8117 5.5487 -6.2472 12 7 3.1805 5.6062 -7.5083 13 14 2.0948 7.0590 -5.4138 14 1 3.1900 7.8519 -4.7994 15 1 1.3864 7.8901 -6.4200 16 1 1.1386 6.6357 -4.3595 17 6 3.0544 0.3972 -1.8967 18 6 2.1441 -0.6746 -1.2629 19 1 1.3930 -1.0586 -1.9530 20 6 3.0592 -1.7920 -0.6706 21 1 3.3726 -2.5747 -1.3615 22 6 4.1809 -1.0220 0.0371 23 6 3.6488 -0.4516 1.1244 24 6 2.1571 -0.8021 1.1832 25 1 1.6725 -0.6884 2.1529 26 6 2.1955 -2.2459 0.5621 27 1 -0.3633 -1.0271 -0.0338 28 1 -0.3633 0.4842 0.9065 29 1 -0.3634 0.5429 -0.8725 30 1 3.0485 1.4583 0.6264 31 1 1.4262 2.1600 0.3474 32 1 3.8584 2.6752 -3.6287 33 1 2.2247 2.1761 -4.1292 34 1 1.4689 4.5347 -4.0166 35 1 3.1023 5.0344 -3.5162 36 1 3.0799 6.4329 -8.0057 37 1 4.0831 0.2686 -1.5602 38 1 3.0023 0.3445 -2.9842 39 1 5.2073 -0.9565 -0.2925 40 1 4.1828 0.1589 1.8374 41 1 1.2020 -2.5884 0.2724 42 1 2.7131 -2.9710 1.1903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887873738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = 5.335876 kcal Electronic energy + Delta-G solvation = -21823.464689 eV Core-core repulsion = 18769.222301 eV Total energy + Delta-G solvation = -3054.242388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00761 -38.81476 -35.50829 -33.48343 -32.54620 -31.20849 -30.65148 -28.74801 -27.16171 -26.23175 -25.28463 -23.12956 -20.96406 -20.60806 -19.93337 -18.72275 -17.67308 -17.10563 -16.54200 -16.29939 -15.96637 -14.74179 -14.70012 -14.20034 -14.02210 -13.59233 -13.32074 -12.91637 -12.80340 -12.56522 -12.46557 -12.21457 -12.15457 -11.70645 -11.56757 -11.43062 -11.31253 -11.08015 -10.94412 -10.75627 -10.61389 -10.36817 -10.10676 -10.01808 -9.76013 -9.21661 -9.17787 -9.11400 -8.49346 -8.25165 -6.01517 -4.00044 1.92706 3.14396 3.25200 3.39355 3.45703 3.57352 4.03357 4.18097 4.25598 4.52668 4.67158 4.76289 4.85827 4.92260 5.01509 5.08304 5.12147 5.26568 5.32317 5.34078 5.37655 5.52066 5.56258 5.62227 5.70493 5.76247 5.78381 5.83018 5.90327 5.94567 6.00665 6.07968 6.10414 6.13892 6.22990 6.46319 6.69405 6.73072 7.38764 7.45822 7.78455 7.89755 8.51547 8.67721 9.01441 9.61739 11.11332 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034823 B = 0.004035 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.880632 B = 6938.254232 C = 7223.331689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C 0.109 3.891 4 N -0.629 5.629 5 C 0.530 3.470 6 O -0.542 6.542 7 C -0.116 4.116 8 C 0.002 3.998 9 C -0.524 4.524 10 H 0.072 0.928 11 C 0.069 3.931 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.261 1.261 17 C 0.103 3.897 18 C -0.098 4.098 19 H 0.094 0.906 20 C -0.072 4.072 21 H 0.101 0.899 22 C -0.167 4.167 23 C -0.166 4.166 24 C -0.064 4.064 25 H 0.101 0.899 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -18.910 18.254 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.014 4.014 4 N -0.365 5.365 5 C 0.322 3.678 6 O -0.418 6.418 7 C -0.156 4.156 8 C -0.036 4.036 9 C -0.562 4.562 10 H 0.090 0.910 11 C -0.132 4.132 12 N -0.543 5.543 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.185 1.185 17 C -0.021 4.021 18 C -0.117 4.117 19 H 0.112 0.888 20 C -0.091 4.091 21 H 0.120 0.880 22 C -0.184 4.184 23 C -0.184 4.184 24 C -0.083 4.083 25 H 0.119 0.881 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.479 -18.097 18.293 25.775 hybrid contribution -0.155 0.890 0.250 0.937 sum -1.634 -17.207 18.543 25.349 Atomic orbital electron populations 1.21563 0.92717 1.01761 1.02329 1.22955 0.95342 0.94588 0.94380 1.22828 0.99540 0.95124 0.83914 1.49127 1.64194 1.11103 1.12032 1.21249 0.76883 0.80309 0.89395 1.90652 1.45147 1.34675 1.71349 1.21634 1.02048 1.02983 0.88893 1.19377 0.97593 0.90465 0.96197 1.21107 1.42192 0.98855 0.94018 0.90958 1.24961 0.94792 0.98770 0.94656 1.69913 1.48248 1.27447 1.08683 0.86803 0.80214 0.82993 0.79608 1.20228 1.21416 1.18542 1.22626 0.97219 0.82192 1.00013 1.23368 0.97089 0.94890 0.96363 0.88782 1.22949 0.93431 0.96162 0.96511 0.88046 1.24471 0.98309 0.99715 0.95953 1.24447 0.95359 1.00102 0.98489 1.22899 0.93148 0.94837 0.97409 0.88120 1.24030 0.99684 0.95874 0.95858 0.92212 0.92289 0.92087 0.90530 0.90699 0.89818 0.89782 0.95845 0.96298 0.92732 0.90208 0.90124 0.85145 0.85705 0.90716 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.02 37.16 0.34 -0.85 16 2 C -0.07 -0.70 0.87 -149.71 -0.13 -0.83 16 3 C 0.11 1.41 5.94 -1.52 -0.01 1.40 16 4 N -0.63 -9.62 3.31 -168.42 -0.56 -10.18 16 5 C 0.53 10.52 7.91 -10.98 -0.09 10.44 16 6 O -0.54 -12.84 16.24 5.55 0.09 -12.75 16 7 C -0.12 -2.39 4.61 -27.88 -0.13 -2.51 16 8 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 9 C -0.52 -15.28 9.66 -34.44 -0.33 -15.62 16 10 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 13 Si 0.88 22.98 27.47 -169.99 -4.67 18.31 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 17 C 0.10 1.20 6.09 -2.52 -0.02 1.19 16 18 C -0.10 -0.93 3.58 -86.82 -0.31 -1.24 16 19 H 0.09 0.87 8.00 -51.94 -0.42 0.46 16 20 C -0.07 -0.55 4.92 -86.48 -0.43 -0.98 16 21 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.17 -1.36 7.70 -34.53 -0.27 -1.63 16 23 C -0.17 -1.39 7.56 -34.53 -0.26 -1.65 16 24 C -0.06 -0.51 4.56 -86.49 -0.39 -0.91 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 26 C -0.12 -0.82 6.67 -22.15 -0.15 -0.97 16 27 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.93 5.58 -51.93 -0.29 0.64 16 31 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.61 7.96 -51.93 -0.41 1.20 16 34 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 35 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.08 0.87 5.53 -51.93 -0.29 0.58 16 38 H 0.08 0.94 7.30 -51.93 -0.38 0.56 16 39 H 0.13 0.97 7.99 -52.49 -0.42 0.55 16 40 H 0.13 0.97 8.01 -52.49 -0.42 0.55 16 41 H 0.07 0.49 7.50 -51.93 -0.39 0.10 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -34.07 322.54 -8.56 -42.62 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.69 Total: -3.09 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.36 Total: -12.23 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.22 Total: -37.72 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.67 Total: 18.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.07 -8.56 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887873738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.960 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds