Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.56087 * 113.67653 * 2 1 4 4 N 1.48082 * 104.83311 * 261.10201 * 3 2 1 5 5 C 1.34771 * 127.84910 * 139.68444 * 4 3 2 6 6 O 1.21284 * 120.00497 * 0.02690 * 5 4 3 7 7 C 1.50707 * 120.00296 * 180.02562 * 5 4 3 8 8 C 1.52994 * 109.47147 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47036 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99665 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00616 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00490 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99461 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46564 * 90.00424 * 13 11 9 15 15 H 1.48493 * 109.46970 * 210.00254 * 13 11 9 16 16 H 1.48495 * 109.47419 * 330.00771 * 13 11 9 17 17 C 1.48074 * 104.29986 * 319.68680 * 4 3 2 18 18 C 1.54249 * 104.80246 * 39.94779 * 17 4 3 19 19 H 1.08989 * 113.04057 * 100.41810 * 18 17 4 20 20 C 1.56103 * 107.89651 * 226.22201 * 18 17 4 21 21 H 1.09002 * 116.23210 * 274.50093 * 20 18 17 22 22 C 1.53355 * 104.15250 * 43.79596 * 20 18 17 23 23 C 1.33813 * 107.34674 * 70.90044 * 22 20 18 24 24 C 1.53348 * 108.69690 * 359.48832 * 23 22 20 25 25 H 1.08997 * 116.28210 * 160.82098 * 24 23 22 26 26 C 1.57215 * 100.49132 * 147.72229 * 20 18 17 27 27 H 1.09000 * 109.47084 * 178.11254 * 1 2 3 28 28 H 1.09000 * 109.46890 * 298.10964 * 1 2 3 29 29 H 1.08995 * 109.47316 * 58.10852 * 1 2 3 30 30 H 1.09006 * 110.65036 * 142.11424 * 3 2 1 31 31 H 1.09000 * 110.15607 * 19.84610 * 3 2 1 32 32 H 1.08997 * 109.47075 * 300.00263 * 7 5 4 33 33 H 1.09003 * 109.46315 * 59.99891 * 7 5 4 34 34 H 1.08997 * 109.47424 * 300.00143 * 8 7 5 35 35 H 1.08997 * 109.47406 * 60.00326 * 8 7 5 36 36 H 0.96998 * 119.99645 * 179.97438 * 12 11 9 37 37 H 1.09002 * 110.37280 * 281.11702 * 17 4 3 38 38 H 1.09003 * 110.46749 * 158.82814 * 17 4 3 39 39 H 1.08001 * 125.78422 * 251.08600 * 22 20 18 40 40 H 1.07995 * 125.50731 * 179.82250 * 23 22 20 41 41 H 1.09007 * 112.52279 * 58.09478 * 26 20 18 42 42 H 1.09005 * 112.52330 * 185.95229 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1568 1.4295 0.0000 4 7 2.5118 1.6878 -1.4142 5 6 2.3727 2.8364 -2.1053 6 8 1.9073 3.8171 -1.5643 7 6 2.7953 2.9025 -3.5504 8 6 2.5321 4.3078 -4.0949 9 6 2.9542 4.3736 -5.5402 10 1 3.3690 3.5005 -6.0218 11 6 2.8117 5.5487 -6.2472 12 7 3.1805 5.6062 -7.5083 13 14 2.0948 7.0590 -5.4138 14 1 3.1900 7.8519 -4.7994 15 1 1.3864 7.8901 -6.4200 16 1 1.1386 6.6357 -4.3595 17 6 3.0544 0.3972 -1.8967 18 6 2.1441 -0.6746 -1.2629 19 1 1.3930 -1.0586 -1.9530 20 6 3.0592 -1.7920 -0.6706 21 1 3.3726 -2.5747 -1.3615 22 6 4.1809 -1.0220 0.0371 23 6 3.6488 -0.4516 1.1244 24 6 2.1571 -0.8021 1.1832 25 1 1.6725 -0.6884 2.1529 26 6 2.1955 -2.2459 0.5621 27 1 -0.3633 -1.0271 -0.0338 28 1 -0.3633 0.4842 0.9065 29 1 -0.3634 0.5429 -0.8725 30 1 3.0485 1.4583 0.6264 31 1 1.4262 2.1600 0.3474 32 1 3.8584 2.6752 -3.6287 33 1 2.2247 2.1761 -4.1292 34 1 1.4689 4.5347 -4.0166 35 1 3.1023 5.0344 -3.5162 36 1 3.0799 6.4329 -8.0057 37 1 4.0831 0.2686 -1.5602 38 1 3.0023 0.3445 -2.9842 39 1 5.2073 -0.9565 -0.2925 40 1 4.1828 0.1589 1.8374 41 1 1.2020 -2.5884 0.2724 42 1 2.7131 -2.9710 1.1903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887873738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -15.127794 kcal Electronic energy + Delta-G solvation = -21824.352060 eV Core-core repulsion = 18769.222301 eV Total energy + Delta-G solvation = -3055.129759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.79440 -40.29379 -36.64767 -35.59819 -33.63407 -33.05210 -31.47541 -29.70010 -28.42549 -27.23488 -26.56768 -24.27384 -22.73031 -21.36217 -20.68269 -20.10175 -19.15084 -18.36909 -17.84274 -17.30513 -17.00478 -16.26283 -16.13409 -16.08728 -15.04154 -14.76901 -14.63283 -14.41448 -14.14088 -13.72072 -13.52583 -13.29495 -13.17128 -13.04698 -12.93839 -12.54303 -12.22635 -12.19170 -12.02057 -11.98414 -11.84239 -11.78476 -11.48543 -11.45670 -11.37723 -11.06864 -10.80759 -10.75042 -10.07181 -9.27260 -8.34151 -6.37265 1.29193 1.30751 1.32476 1.48105 1.60272 1.97407 2.32745 3.01210 3.24778 3.40669 3.57205 3.83376 4.05104 4.08137 4.11142 4.16691 4.25617 4.29023 4.32234 4.40798 4.48903 4.59041 4.61064 4.71588 4.78753 4.81995 4.88650 4.93004 5.01725 5.07184 5.09387 5.19908 5.23751 5.28013 5.35291 5.36887 5.38330 5.39711 5.56788 5.60427 6.07218 6.20533 6.52077 6.68213 7.16138 7.28170 8.81505 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034823 B = 0.004035 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.880632 B = 6938.254232 C = 7223.331689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.067 4.067 3 C 0.103 3.897 4 N -0.623 5.623 5 C 0.529 3.471 6 O -0.591 6.591 7 C -0.108 4.108 8 C 0.007 3.993 9 C -0.530 4.530 10 H 0.051 0.949 11 C 0.017 3.983 12 N -0.941 5.941 13 Si 0.937 3.063 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.265 1.265 17 C 0.094 3.906 18 C -0.096 4.096 19 H 0.100 0.900 20 C -0.066 4.066 21 H 0.118 0.882 22 C -0.172 4.172 23 C -0.178 4.178 24 C -0.060 4.060 25 H 0.112 0.888 26 C -0.109 4.109 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.268 0.732 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -20.839 19.758 28.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.068 4.068 3 C -0.019 4.019 4 N -0.356 5.356 5 C 0.320 3.680 6 O -0.472 6.472 7 C -0.147 4.147 8 C -0.031 4.031 9 C -0.568 4.568 10 H 0.069 0.931 11 C -0.181 4.181 12 N -0.582 5.582 13 Si 0.761 3.239 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.189 1.189 17 C -0.028 4.028 18 C -0.115 4.115 19 H 0.118 0.882 20 C -0.084 4.084 21 H 0.136 0.864 22 C -0.190 4.190 23 C -0.196 4.196 24 C -0.079 4.079 25 H 0.130 0.870 26 C -0.146 4.146 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.102 0.898 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.524 -20.091 19.811 28.257 hybrid contribution -0.080 1.394 -0.215 1.412 sum -1.605 -18.697 19.595 27.132 Atomic orbital electron populations 1.21562 0.92385 1.02833 1.01446 1.22951 0.95533 0.92483 0.95787 1.23087 0.99746 0.96743 0.82338 1.49066 1.62552 1.10934 1.13061 1.20917 0.76897 0.81052 0.89149 1.90624 1.47739 1.36708 1.72135 1.21430 1.03231 1.00120 0.89947 1.19209 0.96168 0.93490 0.94202 1.21379 1.41616 0.98177 0.95595 0.93102 1.25762 0.95286 1.01823 0.95227 1.70013 1.49545 1.28595 1.10011 0.85855 0.79654 0.79667 0.78708 1.19285 1.19985 1.18920 1.22965 0.98427 0.80915 1.00445 1.23386 0.97181 0.94782 0.96124 0.88188 1.22995 0.92827 0.95701 0.96897 0.86424 1.24679 0.98858 0.99537 0.95886 1.24615 0.95730 1.00372 0.98833 1.22933 0.92660 0.95163 0.97117 0.86997 1.24013 1.00151 0.95192 0.95275 0.89976 0.91921 0.94428 0.89517 0.92962 0.88421 0.88419 0.97322 0.97438 0.92264 0.88854 0.90038 0.84517 0.85487 0.89809 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.02 71.98 0.65 -1.48 16 2 C -0.07 -1.17 0.87 -49.07 -0.04 -1.21 16 3 C 0.10 2.59 5.94 87.15 0.52 3.10 16 4 N -0.62 -18.67 3.31 -805.16 -2.67 -21.33 16 5 C 0.53 21.12 7.91 87.66 0.69 21.81 16 6 O -0.59 -28.68 16.24 -3.04 -0.05 -28.73 16 7 C -0.11 -4.43 4.61 29.85 0.14 -4.30 16 8 C 0.01 0.38 3.33 29.85 0.10 0.48 16 9 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 10 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 11 C 0.02 1.03 5.47 84.65 0.46 1.49 16 12 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 13 Si 0.94 47.76 27.47 68.60 1.88 49.64 16 14 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 16 H -0.26 -13.57 6.54 99.48 0.65 -12.92 16 17 C 0.09 2.03 6.09 86.50 0.53 2.56 16 18 C -0.10 -1.58 3.58 -8.33 -0.03 -1.61 16 19 H 0.10 1.58 8.00 -2.39 -0.02 1.56 16 20 C -0.07 -0.78 4.92 -8.11 -0.04 -0.82 16 21 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 22 C -0.17 -2.32 7.70 25.54 0.20 -2.12 16 23 C -0.18 -2.52 7.56 25.54 0.19 -2.33 16 24 C -0.06 -0.78 4.56 -8.12 -0.04 -0.82 16 25 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 26 C -0.11 -1.11 6.67 33.56 0.22 -0.88 16 27 H 0.08 1.03 7.52 -2.39 -0.02 1.01 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 2.01 5.58 -2.38 -0.01 2.00 16 31 H 0.05 1.55 7.69 -2.39 -0.02 1.53 16 32 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.10 3.71 7.96 -2.39 -0.02 3.69 16 34 H 0.01 0.46 7.16 -2.39 -0.02 0.45 16 35 H 0.01 0.39 7.53 -2.39 -0.02 0.38 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.09 1.81 5.53 -2.39 -0.01 1.79 16 38 H 0.08 1.76 7.30 -2.39 -0.02 1.74 16 39 H 0.14 1.65 7.99 -2.91 -0.02 1.63 16 40 H 0.13 1.72 8.01 -2.91 -0.02 1.70 16 41 H 0.08 0.74 7.50 -2.38 -0.02 0.72 16 42 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -74.26 322.54 4.20 -70.05 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 0.94 Total: 6.86 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.80 Total: -17.25 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.37 Total: -80.57 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.73 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.88 Total: 49.64 kcal Total: -74.26 4.20 -70.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887873738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.925 kcal (2) G-P(sol) polarization free energy of solvation -74.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds