Wall clock time and date at job start Mon Mar 30 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38239 * 120.00504 * 2 1 4 4 C 1.38228 * 120.00184 * 180.29721 * 3 2 1 5 5 C 1.38234 * 119.99977 * 359.70033 * 4 3 2 6 6 C 1.38236 * 119.99985 * 0.02684 * 5 4 3 7 7 C 1.50702 * 119.99883 * 179.97438 * 6 5 4 8 8 C 1.38227 * 120.00032 * 359.97438 * 6 5 4 9 9 C 1.50702 * 120.00241 * 179.97438 * 8 6 5 10 10 N 1.46498 * 109.47409 * 95.06081 * 9 8 6 11 11 C 1.46509 * 119.99796 * 277.70489 * 10 9 8 12 12 C 1.34772 * 119.99925 * 97.70066 * 10 9 8 13 13 O 1.21282 * 120.00073 * 0.02562 * 12 10 9 14 14 C 1.50704 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.46847 * 60.00439 * 14 12 10 16 16 C 1.52998 * 109.47292 * 300.00610 * 14 12 10 17 17 C 1.50702 * 109.47313 * 180.02562 * 14 12 10 18 18 H 1.08003 * 119.99646 * 0.02562 * 17 14 12 19 19 C 1.37871 * 119.99977 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00165 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47062 * 60.00044 * 21 19 17 23 23 H 1.48504 * 109.47549 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47098 * 300.00096 * 21 19 17 25 25 H 1.09005 * 109.46553 * 270.25870 * 1 2 3 26 26 H 1.09005 * 109.46798 * 30.25256 * 1 2 3 27 27 H 1.08994 * 109.47366 * 150.25420 * 1 2 3 28 28 H 1.08005 * 119.99588 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00132 * 179.72913 * 4 3 2 30 30 H 1.08005 * 120.00281 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47063 * 276.19512 * 7 6 5 32 32 H 1.08997 * 109.47053 * 36.19365 * 7 6 5 33 33 H 1.08998 * 109.46924 * 156.19137 * 7 6 5 34 34 H 1.09000 * 109.46890 * 335.06171 * 9 8 6 35 35 H 1.08998 * 109.47273 * 215.06674 * 9 8 6 36 36 H 1.08995 * 109.46819 * 274.90878 * 11 10 9 37 37 H 1.09001 * 109.47174 * 34.91118 * 11 10 9 38 38 H 1.08999 * 109.46638 * 154.91552 * 11 10 9 39 39 H 1.09002 * 109.47035 * 299.99714 * 16 14 12 40 40 H 1.09000 * 109.47530 * 59.99918 * 16 14 12 41 41 H 1.09004 * 109.47165 * 179.97438 * 16 14 12 42 42 H 0.97000 * 120.00125 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0062 5 6 4.2717 -0.0001 -0.0062 6 6 3.5805 -1.1972 -0.0005 7 6 4.3339 -2.5024 -0.0010 8 6 2.1982 -1.1972 0.0057 9 6 1.4446 -2.5022 0.0114 10 7 1.1010 -2.8618 1.3893 11 6 2.0904 -3.5263 2.2414 12 6 -0.1252 -2.5814 1.8732 13 8 -0.9443 -2.0316 1.1677 14 6 -0.4788 -2.9518 3.2905 15 1 0.1979 -2.4447 3.9782 16 6 -0.3480 -4.4656 3.4698 17 6 -1.8971 -2.5328 3.5803 18 1 -2.4839 -2.0472 2.8146 19 6 -2.4456 -2.7694 4.8230 20 7 -1.7309 -3.3602 5.7555 21 14 -4.2038 -2.2506 5.1820 22 1 -5.1252 -2.9430 4.2454 23 1 -4.5523 -2.6156 6.5787 24 1 -4.3319 -0.7815 5.0070 25 1 -0.3632 0.0046 1.0277 26 1 -0.3633 0.8878 -0.5178 27 1 -0.3634 -0.8922 -0.5098 28 1 1.6583 2.1325 0.0004 29 1 4.1206 2.1323 -0.0106 30 1 5.3517 -0.0002 -0.0114 31 1 4.6071 -2.7638 -1.0233 32 1 5.2365 -2.4011 0.6016 33 1 3.7032 -3.2862 0.4184 34 1 2.0680 -3.2836 -0.4234 35 1 0.5319 -2.3973 -0.5752 36 1 2.0583 -4.6014 2.0649 37 1 3.0854 -3.1489 2.0052 38 1 1.8636 -3.3230 3.2879 39 1 -1.0248 -4.9728 2.7821 40 1 0.6777 -4.7691 3.2601 41 1 -0.6034 -4.7335 4.4951 42 1 -2.1166 -3.5263 6.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887956387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:33 Heat of formation + Delta-G solvation = -10.299526 kcal Electronic energy + Delta-G solvation = -22147.245157 eV Core-core repulsion = 19092.324768 eV Total energy + Delta-G solvation = -3054.920390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.07055 -38.55078 -35.04925 -33.93018 -33.31783 -32.23099 -30.27958 -28.15106 -26.53049 -26.21655 -25.41788 -25.01988 -22.14237 -20.58515 -20.45345 -18.44264 -16.50192 -16.17108 -16.04026 -15.54112 -15.14780 -14.85954 -14.33401 -13.91273 -13.69104 -13.34391 -12.98460 -12.80487 -12.75749 -12.68547 -12.49812 -12.27386 -11.90791 -11.76004 -11.32861 -11.16500 -10.99637 -10.95143 -10.79289 -10.70666 -10.54356 -10.34054 -10.16954 -9.92593 -8.93607 -8.72765 -8.41807 -8.35568 -8.15536 -7.96838 -6.00117 -4.02898 1.46817 1.55211 3.37386 3.39925 3.44879 3.63253 3.75081 4.09410 4.49138 4.88332 4.91398 5.09649 5.13864 5.26940 5.33156 5.38303 5.49993 5.61116 5.64413 5.73448 5.80069 5.81046 5.95395 5.99393 6.14642 6.17044 6.21738 6.35173 6.36673 6.62393 6.66816 6.70303 6.81218 6.87864 6.94484 6.99935 7.14430 7.26491 7.51172 7.78517 8.00398 8.14648 8.42545 9.04956 9.26855 9.62250 11.07485 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.005294 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.925969 B = 5287.501236 C = 5894.524726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.134 4.134 4 C -0.115 4.115 5 C -0.137 4.137 6 C -0.073 4.073 7 C -0.125 4.125 8 C -0.103 4.103 9 C 0.147 3.853 10 N -0.622 5.622 11 C 0.078 3.922 12 C 0.519 3.481 13 O -0.537 6.537 14 C 0.032 3.968 15 H 0.049 0.951 16 C -0.143 4.143 17 C -0.498 4.498 18 H 0.073 0.927 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.091 0.909 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.894 2.371 -10.132 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.152 4.152 4 C -0.133 4.133 5 C -0.155 4.155 6 C -0.074 4.074 7 C -0.181 4.181 8 C -0.105 4.105 9 C 0.024 3.976 10 N -0.358 5.358 11 C -0.065 4.065 12 C 0.311 3.689 13 O -0.413 6.413 14 C 0.011 3.989 15 H 0.067 0.933 16 C -0.201 4.201 17 C -0.537 4.537 18 H 0.091 0.909 19 C -0.142 4.142 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.109 0.891 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.399 2.581 -10.307 16.329 hybrid contribution -0.672 0.380 0.366 0.854 sum 11.728 2.960 -9.940 15.656 Atomic orbital electron populations 1.21143 0.89658 1.02208 1.04226 1.20031 0.96993 0.92264 0.96042 1.21021 0.94156 0.97551 1.02432 1.21038 0.94297 0.97677 1.00271 1.20871 0.99229 0.92097 1.03312 1.19719 0.93067 0.95222 0.99390 1.21030 0.99985 0.94927 1.02166 1.20042 0.92965 0.95637 1.01832 1.20265 0.99589 0.92305 0.85459 1.48046 1.14182 1.61470 1.12052 1.22003 0.91707 0.96381 0.96456 1.22008 0.79520 0.75983 0.91433 1.90503 1.48748 1.41689 1.60360 1.18816 0.98695 0.94798 0.86544 0.93314 1.21976 0.97247 0.96453 1.04409 1.21107 0.96590 1.37976 0.98012 0.90868 1.24936 0.98010 0.95207 0.96077 1.69862 1.36669 1.42900 1.04246 0.86537 0.84710 0.79137 0.76906 1.20250 1.21438 1.20261 0.89534 0.93260 0.89759 0.86436 0.86567 0.86597 0.91373 0.91585 0.90582 0.90850 0.88775 0.93036 0.92195 0.89800 0.95252 0.95706 0.89090 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 7.98 36.01 0.29 -1.73 16 2 C -0.05 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.91 9.70 -39.58 -0.38 -2.29 16 4 C -0.11 -1.45 10.05 -39.59 -0.40 -1.85 16 5 C -0.14 -1.69 9.73 -39.58 -0.39 -2.08 16 6 C -0.07 -0.96 5.82 -104.63 -0.61 -1.57 16 7 C -0.12 -1.27 8.68 36.01 0.31 -0.96 16 8 C -0.10 -1.58 5.44 -104.62 -0.57 -2.15 16 9 C 0.15 2.27 4.89 -5.19 -0.03 2.25 16 10 N -0.62 -11.08 2.86 -182.95 -0.52 -11.60 16 11 C 0.08 1.16 8.30 59.85 0.50 1.66 16 12 C 0.52 11.59 6.89 -10.99 -0.08 11.51 16 13 O -0.54 -12.99 10.48 5.56 0.06 -12.93 16 14 C 0.03 0.80 1.83 -92.92 -0.17 0.63 16 15 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 16 C -0.14 -3.27 8.56 37.16 0.32 -2.95 16 17 C -0.50 -14.02 8.37 -34.44 -0.29 -14.31 16 18 H 0.07 2.16 6.75 -52.48 -0.35 1.80 16 19 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 20 N -0.90 -25.20 11.32 55.43 0.63 -24.58 16 21 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.09 1.78 6.73 -51.93 -0.35 1.43 16 26 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.08 1.54 4.84 -51.93 -0.25 1.28 16 28 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.08 0.79 3.88 -51.93 -0.20 0.59 16 34 H 0.07 0.94 6.27 -51.93 -0.33 0.62 16 35 H 0.09 1.59 5.48 -51.93 -0.28 1.30 16 36 H 0.05 0.70 7.26 -51.93 -0.38 0.32 16 37 H 0.06 0.76 5.46 -51.93 -0.28 0.48 16 38 H 0.08 1.39 5.64 -51.93 -0.29 1.10 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.02 0.47 4.62 -51.93 -0.24 0.23 16 41 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -30.20 318.32 -8.01 -38.21 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.75 Total: 3.02 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.20 Total: -13.78 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.10 Total: -36.18 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.06 Total: -12.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.20 -8.01 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887956387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.908 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds