Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38239 * 120.00504 * 2 1 4 4 C 1.38228 * 120.00184 * 180.29721 * 3 2 1 5 5 C 1.38234 * 119.99977 * 359.70033 * 4 3 2 6 6 C 1.38236 * 119.99985 * 0.02684 * 5 4 3 7 7 C 1.50702 * 119.99883 * 179.97438 * 6 5 4 8 8 C 1.38227 * 120.00032 * 359.97438 * 6 5 4 9 9 C 1.50702 * 120.00241 * 179.97438 * 8 6 5 10 10 N 1.46498 * 109.47409 * 95.06081 * 9 8 6 11 11 C 1.46509 * 119.99796 * 277.70489 * 10 9 8 12 12 C 1.34772 * 119.99925 * 97.70066 * 10 9 8 13 13 O 1.21282 * 120.00073 * 0.02562 * 12 10 9 14 14 C 1.50704 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.46847 * 60.00439 * 14 12 10 16 16 C 1.52998 * 109.47292 * 300.00610 * 14 12 10 17 17 C 1.50702 * 109.47313 * 180.02562 * 14 12 10 18 18 H 1.08003 * 119.99646 * 0.02562 * 17 14 12 19 19 C 1.37871 * 119.99977 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00165 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47062 * 60.00044 * 21 19 17 23 23 H 1.48504 * 109.47549 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47098 * 300.00096 * 21 19 17 25 25 H 1.09005 * 109.46553 * 270.25870 * 1 2 3 26 26 H 1.09005 * 109.46798 * 30.25256 * 1 2 3 27 27 H 1.08994 * 109.47366 * 150.25420 * 1 2 3 28 28 H 1.08005 * 119.99588 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00132 * 179.72913 * 4 3 2 30 30 H 1.08005 * 120.00281 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47063 * 276.19512 * 7 6 5 32 32 H 1.08997 * 109.47053 * 36.19365 * 7 6 5 33 33 H 1.08998 * 109.46924 * 156.19137 * 7 6 5 34 34 H 1.09000 * 109.46890 * 335.06171 * 9 8 6 35 35 H 1.08998 * 109.47273 * 215.06674 * 9 8 6 36 36 H 1.08995 * 109.46819 * 274.90878 * 11 10 9 37 37 H 1.09001 * 109.47174 * 34.91118 * 11 10 9 38 38 H 1.08999 * 109.46638 * 154.91552 * 11 10 9 39 39 H 1.09002 * 109.47035 * 299.99714 * 16 14 12 40 40 H 1.09000 * 109.47530 * 59.99918 * 16 14 12 41 41 H 1.09004 * 109.47165 * 179.97438 * 16 14 12 42 42 H 0.97000 * 120.00125 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0062 5 6 4.2717 -0.0001 -0.0062 6 6 3.5805 -1.1972 -0.0005 7 6 4.3339 -2.5024 -0.0010 8 6 2.1982 -1.1972 0.0057 9 6 1.4446 -2.5022 0.0114 10 7 1.1010 -2.8618 1.3893 11 6 2.0904 -3.5263 2.2414 12 6 -0.1252 -2.5814 1.8732 13 8 -0.9443 -2.0316 1.1677 14 6 -0.4788 -2.9518 3.2905 15 1 0.1979 -2.4447 3.9782 16 6 -0.3480 -4.4656 3.4698 17 6 -1.8971 -2.5328 3.5803 18 1 -2.4839 -2.0472 2.8146 19 6 -2.4456 -2.7694 4.8230 20 7 -1.7309 -3.3602 5.7555 21 14 -4.2038 -2.2506 5.1820 22 1 -5.1252 -2.9430 4.2454 23 1 -4.5523 -2.6156 6.5787 24 1 -4.3319 -0.7815 5.0070 25 1 -0.3632 0.0046 1.0277 26 1 -0.3633 0.8878 -0.5178 27 1 -0.3634 -0.8922 -0.5098 28 1 1.6583 2.1325 0.0004 29 1 4.1206 2.1323 -0.0106 30 1 5.3517 -0.0002 -0.0114 31 1 4.6071 -2.7638 -1.0233 32 1 5.2365 -2.4011 0.6016 33 1 3.7032 -3.2862 0.4184 34 1 2.0680 -3.2836 -0.4234 35 1 0.5319 -2.3973 -0.5752 36 1 2.0583 -4.6014 2.0649 37 1 3.0854 -3.1489 2.0052 38 1 1.8636 -3.3230 3.2879 39 1 -1.0248 -4.9728 2.7821 40 1 0.6777 -4.7691 3.2601 41 1 -0.6034 -4.7335 4.4951 42 1 -2.1166 -3.5263 6.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887956387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -26.516420 kcal Electronic energy + Delta-G solvation = -22147.948374 eV Core-core repulsion = 19092.324768 eV Total energy + Delta-G solvation = -3055.623607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36924 -39.96904 -36.52537 -35.86816 -34.41251 -33.60559 -32.07243 -29.33839 -27.76097 -27.41139 -26.94861 -26.80476 -23.85389 -21.79397 -21.54765 -20.02672 -18.38283 -17.71200 -17.21435 -17.15086 -16.58960 -16.31674 -15.90030 -15.22983 -14.96360 -14.72946 -14.45035 -14.15600 -14.05838 -13.84241 -13.75118 -13.60606 -13.30734 -13.13449 -12.93177 -12.72855 -12.70774 -12.44386 -12.24844 -12.16874 -12.12864 -11.97637 -11.71605 -11.61925 -10.99312 -10.56450 -10.16992 -9.61310 -9.41844 -9.33304 -8.13496 -6.23231 0.40576 0.49121 1.39801 1.41206 1.49646 2.00861 2.28721 2.47706 2.94215 3.15971 3.82391 3.88081 4.06015 4.08528 4.15833 4.33539 4.39191 4.44547 4.58104 4.60906 4.72613 4.75084 4.79349 4.86381 4.89174 4.92727 4.93881 5.01867 5.03222 5.09425 5.13668 5.36379 5.46589 5.50912 5.60529 5.67913 5.72326 5.76704 5.85634 5.98175 6.18576 6.24107 6.63882 6.85794 7.42642 7.59052 8.92127 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.005294 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.925969 B = 5287.501236 C = 5894.524726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.136 4.136 6 C -0.074 4.074 7 C -0.124 4.124 8 C -0.122 4.122 9 C 0.148 3.852 10 N -0.614 5.614 11 C 0.071 3.929 12 C 0.515 3.485 13 O -0.566 6.566 14 C 0.030 3.970 15 H 0.030 0.970 16 C -0.128 4.128 17 C -0.525 4.525 18 H 0.049 0.951 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.953 3.047 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.278 1.278 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.640 2.096 -10.774 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 C -0.165 4.165 4 C -0.131 4.131 5 C -0.154 4.154 6 C -0.074 4.074 7 C -0.180 4.180 8 C -0.123 4.123 9 C 0.027 3.973 10 N -0.347 5.347 11 C -0.071 4.071 12 C 0.305 3.695 13 O -0.445 6.445 14 C 0.009 3.991 15 H 0.048 0.952 16 C -0.186 4.186 17 C -0.563 4.563 18 H 0.067 0.933 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.202 1.202 23 H -0.200 1.200 24 H -0.204 1.204 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.188 2.288 -10.951 18.864 hybrid contribution -1.413 0.511 0.529 1.593 sum 13.776 2.800 -10.421 17.499 Atomic orbital electron populations 1.20884 0.91488 1.02064 1.01480 1.20068 0.95990 0.93844 0.98367 1.21208 0.95352 0.97179 1.02783 1.21413 0.93557 0.99364 0.98759 1.21308 1.00895 0.91494 1.01656 1.20079 0.92147 0.97202 0.98000 1.21090 1.00198 0.92949 1.03750 1.20065 0.94156 0.94741 1.03329 1.20387 0.99409 0.93945 0.83602 1.47933 1.13025 1.60407 1.13334 1.22203 0.92228 0.97659 0.94976 1.21532 0.81058 0.76362 0.90513 1.90495 1.50225 1.43017 1.60713 1.18701 0.96586 0.95746 0.88073 0.95216 1.21795 0.99387 0.94951 1.02485 1.21277 0.98407 1.38659 0.97964 0.93287 1.25576 1.01428 0.95160 0.95836 1.69948 1.37827 1.42971 1.04384 0.85695 0.80619 0.78564 0.77234 1.20154 1.19992 1.20370 0.93643 0.91979 0.91302 0.85715 0.83727 0.83398 0.89526 0.89674 0.90806 0.87446 0.90903 0.90711 0.89154 0.91621 0.96292 0.91723 0.91487 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.79 7.98 71.24 0.57 -3.22 16 2 C -0.08 -2.67 5.88 -19.86 -0.12 -2.79 16 3 C -0.15 -4.07 9.70 22.27 0.22 -3.86 16 4 C -0.11 -2.53 10.05 22.27 0.22 -2.30 16 5 C -0.14 -2.83 9.73 22.27 0.22 -2.61 16 6 C -0.07 -1.70 5.82 -19.87 -0.12 -1.81 16 7 C -0.12 -1.95 8.68 71.24 0.62 -1.33 16 8 C -0.12 -3.58 5.44 -19.87 -0.11 -3.68 16 9 C 0.15 4.49 4.89 85.63 0.42 4.90 16 10 N -0.61 -21.59 2.86 -851.12 -2.44 -24.03 16 11 C 0.07 1.98 8.30 127.77 1.06 3.04 16 12 C 0.51 23.78 6.89 87.66 0.60 24.39 16 13 O -0.57 -28.99 10.48 -3.04 -0.03 -29.02 16 14 C 0.03 1.54 1.83 -12.28 -0.02 1.51 16 15 H 0.03 1.63 7.42 -2.39 -0.02 1.61 16 16 C -0.13 -5.92 8.56 71.98 0.62 -5.31 16 17 C -0.52 -30.76 8.37 25.60 0.21 -30.55 16 18 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 19 C 0.02 1.07 5.30 84.65 0.45 1.52 16 20 N -0.91 -51.97 11.32 21.44 0.24 -51.72 16 21 Si 0.95 45.68 29.54 68.60 2.03 47.70 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H 0.04 2.02 6.73 -2.38 -0.02 2.01 16 26 H 0.06 2.00 8.09 -2.38 -0.02 1.98 16 27 H 0.07 2.70 4.84 -2.39 -0.01 2.69 16 28 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.07 1.20 3.88 -2.39 -0.01 1.19 16 34 H 0.11 2.48 6.27 -2.39 -0.01 2.46 16 35 H 0.07 2.53 5.48 -2.39 -0.01 2.52 16 36 H 0.07 1.77 7.26 -2.39 -0.02 1.75 16 37 H 0.09 1.98 5.46 -2.39 -0.01 1.97 16 38 H 0.07 2.10 5.64 -2.39 -0.01 2.09 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 2.39 4.62 -2.39 -0.01 2.38 16 41 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -68.54 318.32 5.67 -62.87 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.03 Total: 16.30 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.84 Total: -22.10 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -2.19 Total: -75.75 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.03 Total: -29.02 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -68.54 5.67 -62.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887956387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.355 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds