Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38233 * 119.99832 * 2 1 4 4 C 1.38230 * 119.99786 * 180.29186 * 3 2 1 5 5 C 1.38231 * 120.00272 * 359.70094 * 4 3 2 6 6 C 1.38242 * 119.99856 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99686 * 179.97438 * 6 5 4 8 8 C 1.38228 * 119.99679 * 359.97438 * 6 5 4 9 9 C 1.50706 * 119.99950 * 179.97438 * 8 6 5 10 10 N 1.46507 * 109.46816 * 95.14331 * 9 8 6 11 11 C 1.46497 * 120.00112 * 277.63916 * 10 9 8 12 12 C 1.34782 * 119.99421 * 97.63791 * 10 9 8 13 13 O 1.21277 * 120.00289 * 4.21683 * 12 10 9 14 14 C 1.50702 * 119.99396 * 184.20930 * 12 10 9 15 15 H 1.09000 * 109.47208 * 306.45054 * 14 12 10 16 16 C 1.52994 * 109.47442 * 66.45376 * 14 12 10 17 17 C 1.50702 * 109.46734 * 186.45393 * 14 12 10 18 18 H 1.07999 * 119.99854 * 0.02562 * 17 14 12 19 19 C 1.37878 * 120.00123 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99646 * 359.97438 * 19 17 14 21 21 Si 1.86791 * 120.00176 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47462 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47488 * 119.99782 * 21 19 17 24 24 H 1.48503 * 109.47253 * 239.99809 * 21 19 17 25 25 H 1.08994 * 109.47383 * 270.25446 * 1 2 3 26 26 H 1.09000 * 109.46740 * 30.25921 * 1 2 3 27 27 H 1.09007 * 109.46504 * 150.25812 * 1 2 3 28 28 H 1.08006 * 120.00141 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00107 * 179.72314 * 4 3 2 30 30 H 1.08003 * 120.00416 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.47304 * 276.53460 * 7 6 5 32 32 H 1.09002 * 109.47465 * 36.54217 * 7 6 5 33 33 H 1.09007 * 109.46754 * 156.54291 * 7 6 5 34 34 H 1.09001 * 109.46629 * 335.14986 * 9 8 6 35 35 H 1.08989 * 109.47469 * 215.14378 * 9 8 6 36 36 H 1.08997 * 109.47262 * 274.58617 * 11 10 9 37 37 H 1.08999 * 109.47187 * 34.58738 * 11 10 9 38 38 H 1.08998 * 109.46818 * 154.58589 * 11 10 9 39 39 H 1.08990 * 109.47466 * 186.65412 * 16 14 12 40 40 H 1.09003 * 109.47136 * 306.65523 * 16 14 12 41 41 H 1.09002 * 109.47224 * 66.64906 * 16 14 12 42 42 H 0.97001 * 119.99850 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0061 5 6 4.2717 0.0001 -0.0059 6 6 3.5805 -1.1972 -0.0002 7 6 4.3341 -2.5022 -0.0007 8 6 2.1983 -1.1971 0.0059 9 6 1.4447 -2.5022 0.0115 10 7 1.0994 -2.8607 1.3894 11 6 2.0872 -3.5257 2.2428 12 6 -0.1271 -2.5787 1.8718 13 8 -0.9695 -2.0982 1.1436 14 6 -0.4517 -2.8607 3.3162 15 1 -0.2197 -3.9010 3.5444 16 6 0.3806 -1.9437 4.2145 17 6 -1.9172 -2.6077 3.5603 18 1 -2.5501 -2.2763 2.7504 19 6 -2.4499 -2.7993 4.8175 20 7 -1.6792 -3.2033 5.8035 21 14 -4.2664 -2.4864 5.1198 22 1 -4.9093 -2.0428 3.8568 23 1 -4.9124 -3.7374 5.5917 24 1 -4.4217 -1.4295 6.1515 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3632 -0.8924 -0.5099 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1325 -0.0106 30 1 5.3517 0.0000 -0.0103 31 1 4.6126 -2.7606 -1.0223 32 1 5.2335 -2.4026 0.6070 33 1 3.7012 -3.2873 0.4130 34 1 2.0688 -3.2839 -0.4217 35 1 0.5328 -2.3978 -0.5761 36 1 2.0502 -4.6014 2.0712 37 1 3.0834 -3.1536 2.0034 38 1 1.8630 -3.3167 3.2888 39 1 0.2352 -2.2266 5.2570 40 1 1.4350 -2.0407 3.9554 41 1 0.0649 -0.9103 4.0710 42 1 -2.0540 -3.3384 6.6879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887956388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = -10.066020 kcal Electronic energy + Delta-G solvation = -22238.173747 eV Core-core repulsion = 19183.263483 eV Total energy + Delta-G solvation = -3054.910264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06567 -38.54306 -35.03354 -33.90626 -33.32980 -32.21239 -30.33365 -28.14638 -26.53693 -26.18707 -25.40269 -25.07830 -22.13057 -20.61027 -20.46476 -18.39344 -16.47980 -16.21257 -16.03405 -15.38945 -15.24273 -14.89827 -14.33277 -13.96959 -13.60790 -13.33699 -13.09159 -12.88066 -12.75236 -12.67062 -12.53623 -12.11730 -11.99700 -11.67067 -11.43082 -11.16183 -11.07059 -10.97260 -10.74555 -10.63233 -10.57356 -10.34045 -10.15035 -9.92984 -8.92393 -8.72943 -8.43463 -8.36636 -8.15356 -7.97226 -6.01255 -4.03185 1.47007 1.55134 3.33191 3.40851 3.48466 3.62824 3.76281 4.09414 4.49068 4.88406 4.91554 5.09433 5.14161 5.26833 5.32841 5.38100 5.50840 5.61884 5.64272 5.73708 5.80131 5.81181 5.97000 5.98998 6.13762 6.15724 6.21672 6.33867 6.36260 6.62428 6.67519 6.69274 6.78956 6.88824 6.94342 6.99691 7.13067 7.25583 7.50690 7.77052 8.00895 8.11571 8.42027 9.05376 9.26631 9.62030 11.07049 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.005257 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.239653 B = 5325.423391 C = 5720.132737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.137 4.137 6 C -0.073 4.073 7 C -0.125 4.125 8 C -0.102 4.102 9 C 0.146 3.854 10 N -0.622 5.622 11 C 0.063 3.937 12 C 0.520 3.480 13 O -0.538 6.538 14 C 0.031 3.969 15 H 0.048 0.952 16 C -0.135 4.135 17 C -0.498 4.498 18 H 0.074 0.926 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.032 0.968 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.011 2.919 -9.937 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.151 4.151 4 C -0.133 4.133 5 C -0.155 4.155 6 C -0.074 4.074 7 C -0.181 4.181 8 C -0.104 4.104 9 C 0.023 3.977 10 N -0.357 5.357 11 C -0.080 4.080 12 C 0.312 3.688 13 O -0.414 6.414 14 C 0.010 3.990 15 H 0.066 0.934 16 C -0.192 4.192 17 C -0.536 4.536 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.506 3.108 -10.131 16.391 hybrid contribution -0.667 0.284 0.357 0.808 sum 11.838 3.391 -9.773 15.722 Atomic orbital electron populations 1.21116 0.89780 1.02360 1.04088 1.20006 0.96911 0.92288 0.96158 1.21014 0.94158 0.97530 1.02398 1.21036 0.94291 0.97677 1.00287 1.20872 0.99229 0.92096 1.03264 1.19716 0.93064 0.95216 0.99392 1.21029 0.99989 0.94937 1.02155 1.20040 0.92972 0.95614 1.01744 1.20266 0.99587 0.92317 0.85546 1.48031 1.14239 1.61490 1.11982 1.22172 0.92029 0.96290 0.97527 1.21982 0.79562 0.75298 0.91968 1.90496 1.47053 1.43665 1.60139 1.18844 0.97636 0.97398 0.85126 0.93376 1.21889 0.94799 0.98831 1.03714 1.21182 0.92305 1.44457 0.95676 0.90767 1.24941 0.98120 0.95155 0.96026 1.69895 1.35052 1.47327 1.01398 0.86432 0.85116 0.77703 0.78209 1.19590 1.21117 1.21123 0.89764 0.93116 0.89739 0.86441 0.86567 0.86599 0.91378 0.91579 0.90589 0.90866 0.88719 0.93508 0.91963 0.88585 0.89324 0.96037 0.94848 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 8.01 36.01 0.29 -1.74 16 2 C -0.05 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.89 9.70 -39.59 -0.38 -2.28 16 4 C -0.11 -1.45 10.05 -39.59 -0.40 -1.85 16 5 C -0.14 -1.69 9.73 -39.58 -0.39 -2.07 16 6 C -0.07 -0.97 5.82 -104.63 -0.61 -1.57 16 7 C -0.12 -1.28 8.68 36.00 0.31 -0.97 16 8 C -0.10 -1.56 5.44 -104.62 -0.57 -2.13 16 9 C 0.15 2.27 4.89 -5.19 -0.03 2.25 16 10 N -0.62 -11.13 2.86 -182.95 -0.52 -11.66 16 11 C 0.06 0.95 9.30 59.85 0.56 1.50 16 12 C 0.52 11.63 6.65 -10.98 -0.07 11.56 16 13 O -0.54 -13.06 10.86 5.56 0.06 -13.00 16 14 C 0.03 0.77 1.80 -92.92 -0.17 0.60 16 15 H 0.05 1.23 7.73 -51.93 -0.40 0.83 16 16 C -0.13 -3.13 8.40 37.15 0.31 -2.82 16 17 C -0.50 -13.98 8.37 -34.44 -0.29 -14.27 16 18 H 0.07 2.20 6.77 -52.49 -0.36 1.84 16 19 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 20 N -0.90 -25.17 11.40 55.43 0.63 -24.53 16 21 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H 0.08 1.73 6.85 -51.93 -0.36 1.37 16 26 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.08 1.54 4.83 -51.93 -0.25 1.29 16 28 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.08 0.79 3.88 -51.93 -0.20 0.59 16 34 H 0.07 0.95 6.26 -51.93 -0.33 0.62 16 35 H 0.09 1.61 5.43 -51.94 -0.28 1.32 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.80 5.46 -51.93 -0.28 0.51 16 38 H 0.10 1.60 4.06 -51.93 -0.21 1.39 16 39 H 0.09 2.23 6.28 -51.93 -0.33 1.91 16 40 H 0.02 0.43 5.36 -51.93 -0.28 0.15 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -30.24 320.03 -7.95 -38.19 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.78 Total: 3.14 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.14 Total: -13.75 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.11 Total: -36.19 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.06 Total: -13.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.24 -7.95 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887956388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.126 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds