Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38233 * 119.99832 * 2 1 4 4 C 1.38230 * 119.99786 * 180.29186 * 3 2 1 5 5 C 1.38231 * 120.00272 * 359.70094 * 4 3 2 6 6 C 1.38242 * 119.99856 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99686 * 179.97438 * 6 5 4 8 8 C 1.38228 * 119.99679 * 359.97438 * 6 5 4 9 9 C 1.50706 * 119.99950 * 179.97438 * 8 6 5 10 10 N 1.46507 * 109.46816 * 95.14331 * 9 8 6 11 11 C 1.46497 * 120.00112 * 277.63916 * 10 9 8 12 12 C 1.34782 * 119.99421 * 97.63791 * 10 9 8 13 13 O 1.21277 * 120.00289 * 4.21683 * 12 10 9 14 14 C 1.50702 * 119.99396 * 184.20930 * 12 10 9 15 15 H 1.09000 * 109.47208 * 306.45054 * 14 12 10 16 16 C 1.52994 * 109.47442 * 66.45376 * 14 12 10 17 17 C 1.50702 * 109.46734 * 186.45393 * 14 12 10 18 18 H 1.07999 * 119.99854 * 0.02562 * 17 14 12 19 19 C 1.37878 * 120.00123 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99646 * 359.97438 * 19 17 14 21 21 Si 1.86791 * 120.00176 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47462 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47488 * 119.99782 * 21 19 17 24 24 H 1.48503 * 109.47253 * 239.99809 * 21 19 17 25 25 H 1.08994 * 109.47383 * 270.25446 * 1 2 3 26 26 H 1.09000 * 109.46740 * 30.25921 * 1 2 3 27 27 H 1.09007 * 109.46504 * 150.25812 * 1 2 3 28 28 H 1.08006 * 120.00141 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00107 * 179.72314 * 4 3 2 30 30 H 1.08003 * 120.00416 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.47304 * 276.53460 * 7 6 5 32 32 H 1.09002 * 109.47465 * 36.54217 * 7 6 5 33 33 H 1.09007 * 109.46754 * 156.54291 * 7 6 5 34 34 H 1.09001 * 109.46629 * 335.14986 * 9 8 6 35 35 H 1.08989 * 109.47469 * 215.14378 * 9 8 6 36 36 H 1.08997 * 109.47262 * 274.58617 * 11 10 9 37 37 H 1.08999 * 109.47187 * 34.58738 * 11 10 9 38 38 H 1.08998 * 109.46818 * 154.58589 * 11 10 9 39 39 H 1.08990 * 109.47466 * 186.65412 * 16 14 12 40 40 H 1.09003 * 109.47136 * 306.65523 * 16 14 12 41 41 H 1.09002 * 109.47224 * 66.64906 * 16 14 12 42 42 H 0.97001 * 119.99850 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0061 5 6 4.2717 0.0001 -0.0059 6 6 3.5805 -1.1972 -0.0002 7 6 4.3341 -2.5022 -0.0007 8 6 2.1983 -1.1971 0.0059 9 6 1.4447 -2.5022 0.0115 10 7 1.0994 -2.8607 1.3894 11 6 2.0872 -3.5257 2.2428 12 6 -0.1271 -2.5787 1.8718 13 8 -0.9695 -2.0982 1.1436 14 6 -0.4517 -2.8607 3.3162 15 1 -0.2197 -3.9010 3.5444 16 6 0.3806 -1.9437 4.2145 17 6 -1.9172 -2.6077 3.5603 18 1 -2.5501 -2.2763 2.7504 19 6 -2.4499 -2.7993 4.8175 20 7 -1.6792 -3.2033 5.8035 21 14 -4.2664 -2.4864 5.1198 22 1 -4.9093 -2.0428 3.8568 23 1 -4.9124 -3.7374 5.5917 24 1 -4.4217 -1.4295 6.1515 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3632 -0.8924 -0.5099 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1325 -0.0106 30 1 5.3517 0.0000 -0.0103 31 1 4.6126 -2.7606 -1.0223 32 1 5.2335 -2.4026 0.6070 33 1 3.7012 -3.2873 0.4130 34 1 2.0688 -3.2839 -0.4217 35 1 0.5328 -2.3978 -0.5761 36 1 2.0502 -4.6014 2.0712 37 1 3.0834 -3.1536 2.0034 38 1 1.8630 -3.3167 3.2888 39 1 0.2352 -2.2266 5.2570 40 1 1.4350 -2.0407 3.9554 41 1 0.0649 -0.9103 4.0710 42 1 -2.0540 -3.3384 6.6879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887956388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -26.204945 kcal Electronic energy + Delta-G solvation = -22238.873584 eV Core-core repulsion = 19183.263483 eV Total energy + Delta-G solvation = -3055.610100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36600 -39.96721 -36.50945 -35.86420 -34.41938 -33.57380 -32.14748 -29.32727 -27.74667 -27.41505 -27.01069 -26.79546 -23.86166 -21.82314 -21.54492 -19.98070 -18.37852 -17.72829 -17.27599 -16.99779 -16.68156 -16.17895 -16.07837 -15.21010 -15.00899 -14.73027 -14.38488 -14.31126 -14.04887 -13.81191 -13.77146 -13.58830 -13.28307 -13.14735 -12.93609 -12.88531 -12.65601 -12.45717 -12.29112 -12.15975 -12.02470 -11.99563 -11.71301 -11.64285 -11.00383 -10.56321 -10.22016 -9.58404 -9.41674 -9.34794 -8.14628 -6.23380 0.41022 0.49517 1.38080 1.40246 1.53456 1.99985 2.29296 2.47842 2.94373 3.15667 3.82447 3.87804 4.05901 4.07525 4.16084 4.32459 4.40408 4.44908 4.58403 4.60427 4.69619 4.72982 4.77214 4.84221 4.88233 4.90306 4.92337 4.97979 5.02540 5.11195 5.16901 5.36142 5.45182 5.48428 5.60974 5.67943 5.71430 5.75104 5.84988 5.95748 6.18781 6.20868 6.63950 6.85854 7.42463 7.58461 8.92133 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.005257 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.239653 B = 5325.423391 C = 5720.132737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.081 4.081 3 C -0.146 4.146 4 C -0.113 4.113 5 C -0.135 4.135 6 C -0.073 4.073 7 C -0.124 4.124 8 C -0.120 4.120 9 C 0.147 3.853 10 N -0.614 5.614 11 C 0.058 3.942 12 C 0.517 3.483 13 O -0.567 6.567 14 C 0.029 3.971 15 H 0.037 0.963 16 C -0.117 4.117 17 C -0.523 4.523 18 H 0.048 0.952 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.276 1.276 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.013 0.987 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.795 2.876 -10.433 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 C -0.164 4.164 4 C -0.131 4.131 5 C -0.153 4.153 6 C -0.074 4.074 7 C -0.180 4.180 8 C -0.121 4.121 9 C 0.026 3.974 10 N -0.347 5.347 11 C -0.083 4.083 12 C 0.307 3.693 13 O -0.446 6.446 14 C 0.008 3.992 15 H 0.055 0.945 16 C -0.175 4.175 17 C -0.562 4.562 18 H 0.067 0.933 19 C -0.180 4.180 20 N -0.552 5.552 21 Si 0.779 3.221 22 H -0.205 1.205 23 H -0.199 1.199 24 H -0.202 1.202 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.335 3.048 -10.626 18.904 hybrid contribution -1.434 0.310 0.467 1.539 sum 13.901 3.358 -10.159 17.542 Atomic orbital electron populations 1.20867 0.91621 1.02190 1.01374 1.20034 0.95882 0.93837 0.98451 1.21201 0.95342 0.97155 1.02707 1.21411 0.93553 0.99352 0.98746 1.21303 1.00887 0.91475 1.01604 1.20065 0.92131 0.97169 0.98039 1.21088 1.00203 0.92980 1.03729 1.20043 0.94141 0.94657 1.03305 1.20383 0.99386 0.93997 0.83682 1.47929 1.13135 1.60362 1.13300 1.22345 0.92520 0.97495 0.95962 1.21513 0.81047 0.75717 0.90985 1.90485 1.48524 1.45173 1.60430 1.18728 0.96213 0.96847 0.87400 0.94495 1.21678 0.96648 0.97066 1.02125 1.21315 0.94147 1.45274 0.95420 0.93326 1.25577 1.01807 0.94856 0.95733 1.69967 1.36331 1.47281 1.01609 0.85577 0.80728 0.78077 0.77707 1.20460 1.19920 1.20186 0.93810 0.91808 0.91365 0.85694 0.83718 0.83408 0.89566 0.89642 0.90897 0.87585 0.90896 0.91420 0.88915 0.90373 0.91300 0.92668 0.96805 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.82 8.01 71.24 0.57 -3.25 16 2 C -0.08 -2.63 5.88 -19.86 -0.12 -2.75 16 3 C -0.15 -4.00 9.70 22.27 0.22 -3.78 16 4 C -0.11 -2.49 10.05 22.27 0.22 -2.27 16 5 C -0.13 -2.78 9.73 22.27 0.22 -2.57 16 6 C -0.07 -1.69 5.82 -19.87 -0.12 -1.80 16 7 C -0.12 -1.97 8.68 71.23 0.62 -1.35 16 8 C -0.12 -3.52 5.44 -19.87 -0.11 -3.63 16 9 C 0.15 4.49 4.89 85.63 0.42 4.91 16 10 N -0.61 -21.74 2.86 -851.12 -2.44 -24.18 16 11 C 0.06 1.65 9.30 127.77 1.19 2.83 16 12 C 0.52 23.91 6.65 87.66 0.58 24.49 16 13 O -0.57 -29.21 10.86 -3.02 -0.03 -29.25 16 14 C 0.03 1.49 1.80 -12.29 -0.02 1.47 16 15 H 0.04 1.95 7.73 -2.39 -0.02 1.93 16 16 C -0.12 -5.58 8.40 71.98 0.60 -4.98 16 17 C -0.52 -30.60 8.37 25.60 0.21 -30.38 16 18 H 0.05 3.04 6.77 -2.91 -0.02 3.02 16 19 C 0.02 1.09 5.30 84.66 0.45 1.53 16 20 N -0.91 -51.78 11.40 21.45 0.24 -51.54 16 21 Si 0.95 45.56 29.54 68.60 2.03 47.59 16 22 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H 0.04 1.93 6.85 -2.39 -0.02 1.92 16 26 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 27 H 0.07 2.67 4.83 -2.38 -0.01 2.66 16 28 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 29 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.07 1.20 3.88 -2.38 -0.01 1.19 16 34 H 0.11 2.49 6.26 -2.39 -0.01 2.48 16 35 H 0.07 2.55 5.43 -2.39 -0.01 2.54 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 2.05 5.46 -2.39 -0.01 2.04 16 38 H 0.08 2.50 4.06 -2.39 -0.01 2.49 16 39 H 0.07 3.54 6.28 -2.39 -0.02 3.52 16 40 H 0.05 2.20 5.36 -2.39 -0.01 2.18 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -68.23 320.03 5.77 -62.46 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.03 Total: 16.44 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.94 Total: -21.53 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.19 Total: -75.71 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.03 Total: -29.25 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -68.23 5.77 -62.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887956388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.254 kcal (2) G-P(sol) polarization free energy of solvation -68.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds