Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00008 * 2 1 4 4 C 1.38236 * 119.99988 * 179.72871 * 3 2 1 5 5 C 1.38228 * 120.00042 * 0.27374 * 4 3 2 6 6 C 1.38241 * 120.00316 * 359.95727 * 5 4 3 7 7 C 1.50694 * 120.00134 * 180.02562 * 6 5 4 8 8 C 1.38233 * 120.00020 * 180.19159 * 2 1 3 9 9 C 1.50704 * 120.00522 * 0.02562 * 8 2 1 10 10 N 1.46501 * 109.47078 * 86.68513 * 9 8 2 11 11 C 1.46493 * 120.00139 * 82.14968 * 10 9 8 12 12 C 1.34777 * 119.99930 * 262.14601 * 10 9 8 13 13 O 1.21287 * 120.00154 * 0.02562 * 12 10 9 14 14 C 1.50700 * 120.00270 * 180.02562 * 12 10 9 15 15 C 1.52998 * 109.47669 * 180.02562 * 14 12 10 16 16 C 1.50691 * 109.47268 * 179.97438 * 15 14 12 17 17 H 1.08006 * 120.00473 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99995 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99898 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00284 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46798 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47293 * 120.00124 * 20 18 16 23 23 H 1.48497 * 109.47149 * 240.00445 * 20 18 16 24 24 H 1.08994 * 109.46915 * 85.67427 * 1 2 3 25 25 H 1.09001 * 109.46693 * 205.67418 * 1 2 3 26 26 H 1.08995 * 109.47249 * 325.66993 * 1 2 3 27 27 H 1.07997 * 119.99772 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.99821 * 180.25264 * 4 3 2 29 29 H 1.07998 * 120.00349 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.46977 * 83.63363 * 7 6 5 31 31 H 1.09005 * 109.47472 * 203.62714 * 7 6 5 32 32 H 1.08997 * 109.47451 * 323.62840 * 7 6 5 33 33 H 1.08997 * 109.47312 * 206.68844 * 9 8 2 34 34 H 1.09005 * 109.46376 * 326.69116 * 9 8 2 35 35 H 1.08994 * 109.47147 * 84.65238 * 11 10 9 36 36 H 1.09006 * 109.47071 * 204.65339 * 11 10 9 37 37 H 1.09003 * 109.46833 * 324.65103 * 11 10 9 38 38 H 1.08999 * 109.47222 * 300.00448 * 14 12 10 39 39 H 1.09002 * 109.47242 * 60.00021 * 14 12 10 40 40 H 1.08999 * 109.47007 * 300.00387 * 15 14 12 41 41 H 1.09002 * 109.46929 * 59.99636 * 15 14 12 42 42 H 0.97004 * 119.99723 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0057 5 6 4.2717 0.0001 0.0056 6 6 3.5806 -1.1972 0.0008 7 6 4.3341 -2.5022 0.0013 8 6 2.1982 -1.1971 -0.0040 9 6 1.4448 -2.5023 -0.0090 10 7 1.1321 -2.8804 -1.3893 11 6 2.1411 -3.5530 -2.2111 12 6 -0.0841 -2.6094 -1.9032 13 8 -0.9194 -2.0522 -1.2230 14 6 -0.4061 -2.9988 -3.3230 15 6 -1.8399 -2.5800 -3.6541 16 6 -2.1616 -2.9689 -5.0740 17 1 -1.4179 -3.4655 -5.6797 18 6 -3.4056 -2.6916 -5.5997 19 7 -4.3114 -2.0873 -4.8621 20 14 -3.8047 -3.1742 -7.3597 21 1 -2.6241 -3.8356 -7.9714 22 1 -4.9567 -4.1112 -7.3669 23 1 -4.1502 -1.9590 -8.1400 24 1 -0.3633 0.0775 -1.0247 25 1 -0.3633 -0.9262 0.4453 26 1 -0.3633 0.8486 0.5795 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0098 29 1 5.3517 0.0000 0.0096 30 1 4.6106 -2.7617 1.0232 31 1 3.7021 -3.2869 -0.4144 32 1 5.2347 -2.4020 -0.6044 33 1 2.0582 -3.2776 0.4501 34 1 0.5191 -2.3895 0.5555 35 1 2.1130 -4.6250 -2.0159 36 1 1.9322 -3.3700 -3.2652 37 1 3.1290 -3.1644 -1.9638 38 1 0.2842 -2.4988 -4.0023 39 1 -0.3076 -4.0786 -3.4348 40 1 -2.5304 -3.0797 -2.9748 41 1 -1.9379 -1.5002 -3.5424 42 1 -5.1866 -1.8919 -5.2322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887957599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = -21.318269 kcal Electronic energy + Delta-G solvation = -21508.894930 eV Core-core repulsion = 18453.496732 eV Total energy + Delta-G solvation = -3055.398198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26993 -38.77860 -35.40334 -33.64005 -33.39685 -32.46318 -30.80976 -28.50430 -26.72957 -26.47123 -26.17471 -24.69323 -21.73127 -20.64985 -20.52473 -18.47427 -17.07903 -16.34315 -16.05892 -15.90307 -15.32388 -15.12254 -14.41824 -14.33301 -13.87539 -13.44165 -13.26935 -12.94329 -12.90129 -12.88531 -12.67350 -12.31125 -12.11847 -12.06390 -11.75717 -11.47240 -11.26764 -11.06322 -10.94780 -10.84098 -10.68049 -10.55770 -9.92807 -9.57867 -9.13583 -9.02670 -8.57466 -8.51074 -8.32870 -8.27552 -5.95196 -3.99158 1.31812 1.41592 3.24775 3.33053 3.35374 3.40603 3.43830 3.87936 4.48121 4.73280 4.75464 4.94494 4.96889 5.09532 5.21577 5.23003 5.40008 5.43651 5.45263 5.50636 5.52736 5.63436 5.71239 5.79264 5.82855 5.91478 6.05369 6.18500 6.19567 6.25357 6.26463 6.50196 6.54211 6.65450 6.74013 6.85499 6.92537 7.10024 7.75825 7.77557 7.88430 8.08452 8.40561 8.79022 9.09524 9.64379 11.15734 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.004074 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.402033 B = 6871.297372 C = 7268.053421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 C -0.132 4.132 4 C -0.112 4.112 5 C -0.136 4.136 6 C -0.073 4.073 7 C -0.126 4.126 8 C -0.108 4.108 9 C 0.147 3.853 10 N -0.621 5.621 11 C 0.072 3.928 12 C 0.509 3.491 13 O -0.526 6.526 14 C -0.128 4.128 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.708 0.819 10.794 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.150 4.150 4 C -0.131 4.131 5 C -0.154 4.154 6 C -0.074 4.074 7 C -0.182 4.182 8 C -0.109 4.109 9 C 0.025 3.975 10 N -0.356 5.356 11 C -0.071 4.071 12 C 0.299 3.701 13 O -0.401 6.401 14 C -0.168 4.168 15 C 0.001 3.999 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.047 1.159 11.144 21.242 hybrid contribution -0.042 -0.078 -1.062 1.065 sum 18.004 1.081 10.082 20.663 Atomic orbital electron populations 1.21129 0.89654 1.03000 1.03705 1.20027 0.96962 0.92268 0.96025 1.21047 0.94179 0.97651 1.02173 1.21074 0.94309 0.97772 0.99899 1.20886 0.99317 0.92063 1.03164 1.19723 0.93017 0.95268 0.99363 1.21059 1.00003 0.94831 1.02344 1.19990 0.92980 0.95452 1.02485 1.20315 1.00185 0.92486 0.84547 1.48001 1.14076 1.60789 1.12780 1.21929 0.92059 0.96647 0.96511 1.21575 0.80427 0.77432 0.90623 1.90639 1.47044 1.40845 1.61569 1.21877 1.03245 1.01667 0.89978 1.18894 0.87553 0.97525 0.95960 1.21262 0.98463 1.38785 0.97879 0.92651 1.25015 0.96436 0.95244 0.97637 1.70010 1.05170 1.41482 1.36171 0.86559 0.78317 0.78208 0.85021 1.19764 1.21021 1.21041 0.89985 0.89523 0.92820 0.86267 0.86425 0.86496 0.91244 0.90609 0.91499 0.90491 0.88429 0.92864 0.90293 0.91223 0.90504 0.90412 0.95833 0.95901 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 8.10 36.01 0.29 -1.60 16 2 C -0.05 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.13 -1.72 9.72 -39.58 -0.38 -2.11 16 4 C -0.11 -1.28 10.05 -39.59 -0.40 -1.68 16 5 C -0.14 -1.50 9.73 -39.58 -0.39 -1.88 16 6 C -0.07 -0.84 5.80 -104.62 -0.61 -1.45 16 7 C -0.13 -1.07 8.60 36.00 0.31 -0.76 16 8 C -0.11 -1.45 5.43 -104.62 -0.57 -2.02 16 9 C 0.15 1.96 4.89 -5.19 -0.03 1.93 16 10 N -0.62 -9.17 2.86 -182.95 -0.52 -9.70 16 11 C 0.07 0.81 9.76 59.84 0.58 1.40 16 12 C 0.51 9.73 7.60 -10.99 -0.08 9.64 16 13 O -0.53 -11.53 11.20 5.55 0.06 -11.47 16 14 C -0.13 -2.62 4.11 -27.88 -0.11 -2.73 16 15 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 16 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.08 1.54 7.06 -51.93 -0.37 1.18 16 25 H 0.09 1.46 4.53 -51.93 -0.24 1.22 16 26 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.63 3.76 -51.93 -0.20 0.43 16 32 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 33 H 0.08 0.82 6.35 -51.93 -0.33 0.49 16 34 H 0.10 1.45 5.40 -51.93 -0.28 1.17 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.92 6.25 -51.93 -0.32 0.60 16 37 H 0.07 0.67 5.26 -51.93 -0.27 0.40 16 38 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 39 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -32.88 329.80 -8.45 -41.34 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.15 Total: 0.21 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.53 Total: -15.38 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.21 Total: -36.36 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.06 Total: -11.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.88 -8.45 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887957599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.018 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds