Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00156 * 2 1 4 4 N 1.46899 * 109.47397 * 125.10314 * 3 2 1 5 5 C 1.46899 * 110.99947 * 199.43143 * 4 3 2 6 6 C 1.50707 * 109.47029 * 66.04791 * 5 4 3 7 7 H 1.07993 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99906 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00085 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99969 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47101 * 59.99711 * 10 8 6 12 12 H 1.48497 * 109.47203 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47079 * 300.00100 * 10 8 6 14 14 C 1.46903 * 111.00069 * 75.47695 * 4 3 2 15 15 C 1.50696 * 109.47002 * 194.37135 * 14 4 3 16 16 C 1.38288 * 119.94727 * 256.71747 * 15 14 4 17 17 C 1.38124 * 120.05583 * 180.02562 * 16 15 14 18 18 C 1.38749 * 119.94341 * 359.97438 * 17 16 15 19 19 O 1.35897 * 120.05348 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00045 * 0.02562 * 19 18 17 21 21 C 1.38706 * 119.89053 * 0.27587 * 18 17 16 22 22 C 1.38165 * 119.94420 * 359.48965 * 21 18 17 23 23 C 1.50703 * 119.97447 * 180.23012 * 22 21 18 24 24 H 1.08000 * 120.00129 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99777 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46978 * 5.10208 * 3 2 1 28 28 H 1.09001 * 109.46801 * 245.10230 * 3 2 1 29 29 H 1.09001 * 109.46987 * 186.04416 * 5 4 3 30 30 H 1.08996 * 109.47347 * 306.04744 * 5 4 3 31 31 H 0.96995 * 120.00155 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46886 * 74.37466 * 14 4 3 33 33 H 1.08996 * 109.47240 * 314.37585 * 14 4 3 34 34 H 1.08004 * 119.96861 * 0.02562 * 16 15 14 35 35 H 1.08006 * 120.02340 * 179.97438 * 17 16 15 36 36 H 1.09005 * 109.46932 * 299.99884 * 20 19 18 37 37 H 1.08998 * 109.47585 * 60.00061 * 20 19 18 38 38 H 1.08999 * 109.47127 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.02975 * 179.72831 * 21 18 17 40 40 H 1.08998 * 109.47260 * 272.25599 * 23 22 21 41 41 H 1.09000 * 109.47033 * 32.25554 * 23 22 21 42 42 H 1.08999 * 109.47198 * 152.25078 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9981 1.3309 1.1331 5 6 3.4048 2.7068 1.4487 6 6 2.2125 3.4806 1.9497 7 1 1.2490 2.9986 2.0255 8 6 2.3518 4.8038 2.3112 9 7 3.5252 5.3906 2.2193 10 14 0.8739 5.7631 2.9314 11 1 0.3384 5.1117 4.1537 12 1 1.2849 7.1539 3.2506 13 1 -0.1769 5.7865 1.8822 14 6 4.1687 0.4833 0.8695 15 6 4.9189 0.2491 2.1552 16 6 6.0903 0.9398 2.4067 17 6 6.7800 0.7264 3.5842 18 6 6.2964 -0.1815 4.5153 19 8 6.9730 -0.3927 5.6748 20 6 8.1752 0.3548 5.8700 21 6 5.1241 -0.8769 4.2585 22 6 4.4353 -0.6563 3.0813 23 6 3.1587 -1.4077 2.8038 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3588 2.1315 0.0914 28 1 2.6199 1.4033 -0.9322 29 1 4.1765 2.6900 2.2183 30 1 3.7971 3.1847 0.5511 31 1 3.6231 6.3216 2.4732 32 1 4.8226 0.9797 0.1525 33 1 3.8406 -0.4724 0.4609 34 1 6.4660 1.6467 1.6817 35 1 7.6950 1.2659 3.7799 36 1 8.8810 0.1225 5.0725 37 1 7.9470 1.4206 5.8542 38 1 8.6148 0.0913 6.8320 39 1 4.7480 -1.5873 4.9798 40 1 3.3928 -2.3546 2.3174 41 1 2.6390 -1.6001 3.7424 42 1 2.5209 -0.8118 2.1510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894586275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = 8.439928 kcal Electronic energy + Delta-G solvation = -21496.866328 eV Core-core repulsion = 18442.758542 eV Total energy + Delta-G solvation = -3054.107786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.93509 -38.08919 -36.39096 -33.19278 -32.44023 -32.09663 -30.48019 -27.96529 -27.07745 -26.26511 -25.30422 -23.71742 -21.74521 -21.01342 -19.87108 -19.09460 -17.43156 -16.46335 -16.02716 -15.59063 -15.50750 -14.72336 -14.66917 -14.12265 -14.04720 -13.68212 -13.29762 -13.05022 -12.91066 -12.53416 -12.22633 -11.93515 -11.84557 -11.75430 -11.57234 -11.35469 -11.25796 -10.80365 -10.70513 -10.59930 -10.45631 -10.41355 -10.20006 -9.82736 -9.19619 -8.89308 -8.42184 -8.33335 -7.68407 -7.20556 -5.99826 -4.00149 1.75595 1.83455 2.74081 3.34766 3.38812 3.42148 3.47524 4.10551 4.45880 5.03846 5.12951 5.19571 5.22135 5.28801 5.35796 5.37867 5.50068 5.54167 5.62497 5.65705 5.73673 5.80055 5.98150 6.01821 6.02211 6.19298 6.26366 6.27944 6.35055 6.56858 6.59274 6.71214 6.84339 7.04174 7.12060 7.18308 7.27651 7.35305 7.37131 7.68954 7.83224 8.13132 8.22941 8.57033 9.06958 9.63348 11.10994 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.006314 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.153825 B = 4433.839924 C = 5881.212987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C 0.081 3.919 4 N -0.524 5.524 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.094 3.906 15 C -0.096 4.096 16 C -0.063 4.063 17 C -0.213 4.213 18 C 0.119 3.881 19 O -0.323 6.323 20 C 0.029 3.971 21 C -0.159 4.159 22 C -0.022 4.022 23 C -0.121 4.121 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.038 0.962 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -12.238 0.349 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.151 4.151 3 C -0.047 4.047 4 N -0.248 5.248 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.034 4.034 15 C -0.097 4.097 16 C -0.082 4.082 17 C -0.232 4.232 18 C 0.074 3.926 19 O -0.237 6.237 20 C -0.066 4.066 21 C -0.178 4.178 22 C -0.023 4.023 23 C -0.178 4.178 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.740 -12.354 0.943 13.265 hybrid contribution 0.015 1.307 -0.255 1.332 sum 4.754 -11.047 0.688 12.046 Atomic orbital electron populations 1.23705 0.95986 1.01204 1.02991 1.22998 0.95853 0.98475 0.97730 1.21215 0.96139 0.95548 0.91802 1.62166 1.12487 1.13981 1.36208 1.19768 0.96894 0.81211 0.95352 1.21122 0.95598 0.94877 1.42780 0.91952 1.24958 0.95873 0.97711 0.95944 1.69944 1.22766 1.12276 1.48814 0.86611 0.82868 0.78806 0.79430 1.20207 1.21431 1.20311 1.20958 0.92169 0.97719 0.92511 1.19566 0.95275 0.97504 0.97362 1.20840 0.94245 0.96909 0.96185 1.21070 1.02956 1.02827 0.96331 1.18916 0.92629 0.95641 0.85368 1.86011 1.37472 1.63635 1.36589 1.22981 0.85207 0.96306 1.02106 1.20179 0.95059 1.03619 0.98897 1.19447 0.95185 0.95385 0.92245 1.20945 0.94809 0.99143 1.02891 0.89298 0.88630 0.88327 0.88932 0.95344 0.94418 0.99413 0.92994 0.95188 0.91275 0.86095 0.86054 0.92966 0.92615 0.88742 0.85870 0.92142 0.92063 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 14.32 29.01 0.42 -2.49 16 2 C -0.13 -2.05 8.20 -36.03 -0.30 -2.35 16 3 C 0.08 1.52 5.26 -4.98 -0.03 1.49 16 4 N -0.52 -10.91 3.52 -238.97 -0.84 -11.76 16 5 C 0.19 4.94 4.57 -4.97 -0.02 4.92 16 6 C -0.51 -14.09 8.24 -34.44 -0.28 -14.38 16 7 H 0.06 1.73 7.31 -52.49 -0.38 1.34 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.09 1.69 4.04 -4.98 -0.02 1.67 16 15 C -0.10 -1.75 4.67 -104.60 -0.49 -2.23 16 16 C -0.06 -1.12 8.75 -39.60 -0.35 -1.47 16 17 C -0.21 -3.52 9.04 -39.43 -0.36 -3.88 16 18 C 0.12 1.99 6.69 -39.22 -0.26 1.72 16 19 O -0.32 -4.89 10.50 -19.42 -0.20 -5.09 16 20 C 0.03 0.32 9.81 101.05 0.99 1.31 16 21 C -0.16 -2.64 9.65 -39.44 -0.38 -3.02 16 22 C -0.02 -0.38 5.88 -104.64 -0.62 -0.99 16 23 C -0.12 -1.80 9.34 36.01 0.34 -1.46 16 24 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 25 H 0.10 1.43 7.84 -52.49 -0.41 1.02 16 26 H 0.10 1.37 6.98 -52.49 -0.37 1.01 16 27 H 0.09 1.95 6.23 -51.93 -0.32 1.62 16 28 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 29 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 30 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.07 1.08 6.14 -51.93 -0.32 0.76 16 34 H 0.12 2.08 8.01 -52.48 -0.42 1.66 16 35 H 0.12 1.72 6.30 -52.48 -0.33 1.39 16 36 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 37 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.10 1.57 4.63 -51.93 -0.24 1.33 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -30.70 340.14 -8.08 -38.77 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.42 Total: 1.75 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.45 Total: -19.66 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.11 Total: -37.69 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.20 Total: -5.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.70 -8.08 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.212 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds