Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00156 * 2 1 4 4 N 1.46899 * 109.47397 * 125.10314 * 3 2 1 5 5 C 1.46899 * 110.99947 * 199.43143 * 4 3 2 6 6 C 1.50707 * 109.47029 * 66.04791 * 5 4 3 7 7 H 1.07993 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99906 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00085 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99969 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47101 * 59.99711 * 10 8 6 12 12 H 1.48497 * 109.47203 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47079 * 300.00100 * 10 8 6 14 14 C 1.46903 * 111.00069 * 75.47695 * 4 3 2 15 15 C 1.50696 * 109.47002 * 194.37135 * 14 4 3 16 16 C 1.38288 * 119.94727 * 256.71747 * 15 14 4 17 17 C 1.38124 * 120.05583 * 180.02562 * 16 15 14 18 18 C 1.38749 * 119.94341 * 359.97438 * 17 16 15 19 19 O 1.35897 * 120.05348 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00045 * 0.02562 * 19 18 17 21 21 C 1.38706 * 119.89053 * 0.27587 * 18 17 16 22 22 C 1.38165 * 119.94420 * 359.48965 * 21 18 17 23 23 C 1.50703 * 119.97447 * 180.23012 * 22 21 18 24 24 H 1.08000 * 120.00129 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99777 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46978 * 5.10208 * 3 2 1 28 28 H 1.09001 * 109.46801 * 245.10230 * 3 2 1 29 29 H 1.09001 * 109.46987 * 186.04416 * 5 4 3 30 30 H 1.08996 * 109.47347 * 306.04744 * 5 4 3 31 31 H 0.96995 * 120.00155 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46886 * 74.37466 * 14 4 3 33 33 H 1.08996 * 109.47240 * 314.37585 * 14 4 3 34 34 H 1.08004 * 119.96861 * 0.02562 * 16 15 14 35 35 H 1.08006 * 120.02340 * 179.97438 * 17 16 15 36 36 H 1.09005 * 109.46932 * 299.99884 * 20 19 18 37 37 H 1.08998 * 109.47585 * 60.00061 * 20 19 18 38 38 H 1.08999 * 109.47127 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.02975 * 179.72831 * 21 18 17 40 40 H 1.08998 * 109.47260 * 272.25599 * 23 22 21 41 41 H 1.09000 * 109.47033 * 32.25554 * 23 22 21 42 42 H 1.08999 * 109.47198 * 152.25078 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9981 1.3309 1.1331 5 6 3.4048 2.7068 1.4487 6 6 2.2125 3.4806 1.9497 7 1 1.2490 2.9986 2.0255 8 6 2.3518 4.8038 2.3112 9 7 3.5252 5.3906 2.2193 10 14 0.8739 5.7631 2.9314 11 1 0.3384 5.1117 4.1537 12 1 1.2849 7.1539 3.2506 13 1 -0.1769 5.7865 1.8822 14 6 4.1687 0.4833 0.8695 15 6 4.9189 0.2491 2.1552 16 6 6.0903 0.9398 2.4067 17 6 6.7800 0.7264 3.5842 18 6 6.2964 -0.1815 4.5153 19 8 6.9730 -0.3927 5.6748 20 6 8.1752 0.3548 5.8700 21 6 5.1241 -0.8769 4.2585 22 6 4.4353 -0.6563 3.0813 23 6 3.1587 -1.4077 2.8038 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3588 2.1315 0.0914 28 1 2.6199 1.4033 -0.9322 29 1 4.1765 2.6900 2.2183 30 1 3.7971 3.1847 0.5511 31 1 3.6231 6.3216 2.4732 32 1 4.8226 0.9797 0.1525 33 1 3.8406 -0.4724 0.4609 34 1 6.4660 1.6467 1.6817 35 1 7.6950 1.2659 3.7799 36 1 8.8810 0.1225 5.0725 37 1 7.9470 1.4206 5.8542 38 1 8.6148 0.0913 6.8320 39 1 4.7480 -1.5873 4.9798 40 1 3.3928 -2.3546 2.3174 41 1 2.6390 -1.6001 3.7424 42 1 2.5209 -0.8118 2.1510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894586275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = -8.949486 kcal Electronic energy + Delta-G solvation = -21497.620390 eV Core-core repulsion = 18442.758542 eV Total energy + Delta-G solvation = -3054.861847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18366 -39.43337 -37.83583 -34.95574 -34.07039 -33.39039 -31.88555 -29.42450 -28.68217 -27.36080 -26.67959 -25.54532 -23.12065 -22.60169 -21.22675 -20.41632 -18.62658 -18.51842 -17.35080 -16.97580 -16.64153 -16.53896 -16.12090 -15.57616 -15.51622 -15.06649 -14.54353 -14.29210 -14.24494 -14.11484 -13.97912 -13.38221 -13.13423 -13.00224 -12.93933 -12.79428 -12.66711 -12.59258 -12.50997 -12.13493 -11.82815 -11.77107 -11.66240 -11.49713 -11.20445 -10.58276 -10.17013 -9.63884 -9.03592 -8.86356 -8.17739 -6.26129 0.45525 0.50306 1.39370 1.42407 1.49742 1.53964 2.39941 2.40760 2.78497 3.15023 3.56583 3.88124 3.95256 4.07466 4.19062 4.25089 4.37871 4.39417 4.41880 4.48544 4.52032 4.58870 4.68977 4.71698 4.78166 4.92868 4.97827 4.99933 5.09377 5.13311 5.27909 5.29267 5.37390 5.44827 5.55991 5.66844 5.82244 5.85271 5.91203 6.07853 6.11093 6.40704 6.49343 6.67234 6.90046 7.42406 8.92808 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.006314 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.153825 B = 4433.839924 C = 5881.212987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.142 4.142 3 C 0.081 3.919 4 N -0.524 5.524 5 C 0.211 3.789 6 C -0.518 4.518 7 H 0.061 0.939 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.099 3.901 15 C -0.119 4.119 16 C -0.082 4.082 17 C -0.221 4.221 18 C 0.116 3.884 19 O -0.333 6.333 20 C 0.020 3.980 21 C -0.169 4.169 22 C -0.028 4.028 23 C -0.118 4.118 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.011 0.989 30 H -0.044 1.044 31 H 0.262 0.738 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -13.892 1.069 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.161 4.161 3 C -0.046 4.046 4 N -0.248 5.248 5 C 0.085 3.915 6 C -0.556 4.556 7 H 0.079 0.921 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.191 1.191 14 C -0.028 4.028 15 C -0.120 4.120 16 C -0.100 4.100 17 C -0.239 4.239 18 C 0.070 3.930 19 O -0.247 6.247 20 C -0.075 4.075 21 C -0.188 4.188 22 C -0.029 4.029 23 C -0.174 4.174 24 H 0.139 0.861 25 H 0.103 0.897 26 H 0.140 0.860 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.029 0.971 30 H -0.026 1.026 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.705 -14.029 1.654 14.604 hybrid contribution 0.398 1.794 -0.458 1.894 sum 4.103 -12.234 1.196 12.959 Atomic orbital electron populations 1.23916 0.95633 1.02225 1.00659 1.22854 0.96140 0.97315 0.99746 1.21186 0.95434 0.96893 0.91109 1.62095 1.13810 1.11241 1.37620 1.19347 0.95375 0.83775 0.92994 1.21431 0.96095 0.95489 1.42595 0.92095 1.25837 0.98738 0.98817 0.96105 1.70078 1.24893 1.12607 1.49803 0.85549 0.79439 0.77268 0.79063 1.19682 1.20971 1.19089 1.20991 0.91020 0.98105 0.92718 1.19691 0.95698 0.98596 0.97983 1.20961 0.94965 0.97237 0.96878 1.21269 1.03628 1.03134 0.95893 1.19091 0.92836 0.95255 0.85775 1.86002 1.38772 1.64267 1.35674 1.23300 0.84053 0.95854 1.04260 1.20469 0.95162 1.04002 0.99146 1.19751 0.96013 0.95107 0.92025 1.20961 0.93355 0.99797 1.03337 0.86132 0.89705 0.85974 0.91799 0.95216 0.97100 1.02625 0.92924 0.96012 0.88404 0.86851 0.84271 0.91666 0.92957 0.85769 0.84110 0.89340 0.91187 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.93 14.32 67.78 0.97 -3.96 16 2 C -0.14 -4.15 8.20 25.64 0.21 -3.94 16 3 C 0.08 3.08 5.26 85.56 0.45 3.53 16 4 N -0.52 -22.18 3.52 -909.95 -3.20 -25.39 16 5 C 0.21 11.31 4.57 85.56 0.39 11.71 16 6 C -0.52 -29.61 8.24 25.60 0.21 -29.40 16 7 H 0.06 3.43 7.31 -2.91 -0.02 3.40 16 8 C 0.00 0.17 5.46 84.66 0.46 0.63 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.10 3.56 4.04 85.56 0.35 3.91 16 15 C -0.12 -4.35 4.67 -19.85 -0.09 -4.44 16 16 C -0.08 -3.01 8.75 22.25 0.19 -2.81 16 17 C -0.22 -7.33 9.04 22.36 0.20 -7.13 16 18 C 0.12 3.78 6.69 22.50 0.15 3.93 16 19 O -0.33 -9.62 10.50 -92.39 -0.97 -10.59 16 20 C 0.02 0.40 9.81 113.37 1.11 1.51 16 21 C -0.17 -5.45 9.65 22.36 0.22 -5.23 16 22 C -0.03 -0.94 5.88 -19.88 -0.12 -1.06 16 23 C -0.12 -3.23 9.34 71.24 0.67 -2.56 16 24 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 25 H 0.08 2.42 7.84 -2.91 -0.02 2.40 16 26 H 0.12 3.01 6.98 -2.91 -0.02 2.99 16 27 H 0.06 2.76 6.23 -2.39 -0.01 2.74 16 28 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 29 H 0.01 0.64 6.48 -2.39 -0.02 0.62 16 30 H -0.04 -2.57 8.12 -2.39 -0.02 -2.59 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.02 0.81 7.90 -2.39 -0.02 0.79 16 33 H 0.10 2.91 6.14 -2.39 -0.01 2.90 16 34 H 0.11 4.18 8.01 -2.91 -0.02 4.16 16 35 H 0.14 3.93 6.30 -2.91 -0.02 3.91 16 36 H 0.06 1.15 7.66 -2.38 -0.02 1.13 16 37 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 38 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 42 H 0.08 2.51 4.63 -2.39 -0.01 2.50 16 Total: -1.00 -67.42 340.14 4.50 -62.92 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.99 Total: 17.89 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 5.37 Total: -35.32 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.92 Total: -81.98 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.97 Total: -10.59 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.42 4.50 -62.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.970 kcal (2) G-P(sol) polarization free energy of solvation -67.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds