Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 120.00321 * 2 1 4 4 C 1.38211 * 120.00325 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99820 * 359.75060 * 4 3 2 6 6 C 1.38212 * 120.00128 * 0.49997 * 5 4 3 7 7 C 1.50704 * 120.00134 * 179.76578 * 6 5 4 8 8 H 1.09001 * 109.47180 * 204.73032 * 7 6 5 9 9 O 1.42899 * 109.47363 * 324.73396 * 7 6 5 10 10 C 1.52999 * 109.46825 * 84.73384 * 7 6 5 11 11 N 1.46899 * 109.47311 * 179.97438 * 10 7 6 12 12 C 1.46898 * 111.00263 * 179.97438 * 11 10 7 13 13 C 1.52996 * 109.47224 * 185.35066 * 12 11 10 14 14 C 1.50708 * 115.54865 * 65.04919 * 13 12 11 15 15 H 1.07999 * 120.00061 * 265.44265 * 14 13 12 16 16 C 1.37880 * 119.99865 * 85.44900 * 14 13 12 17 17 N 1.31513 * 120.00017 * 353.59055 * 16 14 13 18 18 Si 1.86796 * 119.99505 * 173.59506 * 16 14 13 19 19 H 1.48501 * 109.47225 * 90.00203 * 18 16 14 20 20 H 1.48503 * 109.46789 * 209.99420 * 18 16 14 21 21 H 1.48497 * 109.47461 * 329.99370 * 18 16 14 22 22 C 1.53002 * 117.50139 * 279.38150 * 13 12 11 23 23 C 1.52995 * 117.50251 * 210.71867 * 13 12 11 24 24 C 1.38214 * 120.00216 * 179.97438 * 2 1 3 25 25 H 1.08991 * 109.47088 * 270.02183 * 1 2 3 26 26 H 1.09004 * 109.46841 * 30.02508 * 1 2 3 27 27 H 1.08999 * 109.46616 * 150.01991 * 1 2 3 28 28 H 1.08007 * 119.99715 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.00083 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.99951 * 180.27724 * 5 4 3 31 31 H 0.96702 * 113.99972 * 59.99133 * 9 7 6 32 32 H 1.08997 * 109.47593 * 60.00013 * 10 7 6 33 33 H 1.09001 * 109.46954 * 299.99786 * 10 7 6 34 34 H 1.00902 * 111.00104 * 303.95601 * 11 10 7 35 35 H 1.08998 * 109.47109 * 305.35084 * 12 11 10 36 36 H 1.08996 * 109.47032 * 65.35129 * 12 11 10 37 37 H 0.96994 * 119.99624 * 180.02562 * 17 16 14 38 38 H 1.08997 * 117.49411 * 359.97438 * 22 13 12 39 39 H 1.09001 * 117.50253 * 145.01879 * 22 13 12 40 40 H 1.08998 * 117.50185 * 214.98101 * 23 13 12 41 41 H 1.09007 * 117.49500 * 359.97438 * 23 13 12 42 42 H 1.07997 * 119.99448 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5807 -1.1969 0.0010 7 6 4.3342 -2.5021 0.0020 8 1 3.7094 -3.2826 -0.4321 9 8 5.5284 -2.3632 -0.7704 10 6 4.6975 -2.8801 1.4393 11 7 5.4314 -4.1526 1.4404 12 6 5.7981 -4.5477 2.8069 13 6 6.6725 -5.8023 2.7578 14 6 8.0167 -5.6322 2.0978 15 1 8.1389 -5.8719 1.0519 16 6 9.0904 -5.1708 2.8294 17 7 8.9155 -4.7600 4.0665 18 14 10.7936 -5.1292 2.0634 19 1 11.0040 -3.8197 1.3953 20 1 11.8175 -5.3143 3.1230 21 1 10.9134 -6.2202 1.0633 22 6 5.9669 -7.1490 2.5867 23 6 6.5822 -6.7730 3.9369 24 6 2.1981 -1.1969 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6584 2.1327 -0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3517 0.0000 0.0112 31 1 6.1331 -1.6843 -0.4410 32 1 3.7866 -2.9861 2.0285 33 1 5.3223 -2.0995 1.8734 34 1 4.8983 -4.8780 0.9847 35 1 6.3509 -3.7380 3.2833 36 1 4.8946 -4.7568 3.3795 37 1 9.6708 -4.4351 4.5809 38 1 4.8797 -7.1412 2.5096 39 1 6.4749 -7.9122 1.9972 40 1 7.4949 -7.2889 4.2351 41 1 5.9002 -6.5176 4.7479 42 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905250441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -7.755477 kcal Electronic energy + Delta-G solvation = -20805.243485 eV Core-core repulsion = 17750.433414 eV Total energy + Delta-G solvation = -3054.810071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81519 -37.44028 -36.56077 -33.81628 -32.78003 -31.78615 -31.55110 -27.95676 -27.03365 -25.51009 -24.21700 -22.36311 -22.13509 -20.95538 -20.39597 -18.91435 -17.25455 -16.38413 -15.87312 -15.80021 -14.99375 -14.68336 -14.45123 -14.19022 -13.96728 -13.81871 -13.43213 -13.27750 -13.13566 -12.68897 -12.38921 -12.25787 -11.90923 -11.60030 -11.42521 -11.23135 -11.11291 -10.86777 -10.82168 -10.61808 -10.39996 -10.13862 -9.87262 -9.37912 -8.87795 -8.73719 -8.68047 -8.30878 -8.00774 -7.47979 -5.90078 -3.90748 1.23333 1.28494 3.38903 3.44900 3.49785 3.61850 4.43335 4.53529 4.62230 4.70874 4.78744 4.98909 5.12986 5.15486 5.24002 5.33792 5.38337 5.40181 5.47026 5.49414 5.58689 5.62481 5.88054 5.93086 5.99556 6.12540 6.23119 6.36573 6.37361 6.44824 6.53398 6.56186 6.67215 6.78275 6.89719 6.92178 7.16225 7.51814 7.62036 7.87577 7.99274 8.03713 8.20789 8.62266 9.08642 9.72015 11.19931 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.003897 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.627655 B = 7183.428333 C = 7865.019616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.103 4.103 7 C 0.151 3.849 8 H 0.101 0.899 9 O -0.538 6.538 10 C 0.036 3.964 11 N -0.659 5.659 12 C 0.108 3.892 13 C 0.054 3.946 14 C -0.466 4.466 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.216 4.216 23 C -0.159 4.159 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.373 0.627 32 H 0.025 0.975 33 H 0.072 0.928 34 H 0.330 0.670 35 H 0.075 0.925 36 H -0.008 1.008 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 10.425 -6.286 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.133 4.133 6 C -0.104 4.104 7 C 0.091 3.909 8 H 0.119 0.881 9 O -0.343 6.343 10 C -0.095 4.095 11 N -0.288 5.288 12 C -0.021 4.021 13 C 0.053 3.947 14 C -0.504 4.504 15 H 0.078 0.922 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.253 4.253 23 C -0.197 4.197 24 C -0.131 4.131 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.220 0.780 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.010 0.990 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.121 10.315 -6.594 18.690 hybrid contribution 0.296 0.304 0.560 0.703 sum -13.825 10.620 -6.034 18.448 Atomic orbital electron populations 1.20785 0.91272 1.02673 1.02299 1.19894 0.95993 0.93160 0.99752 1.21008 0.94310 0.97369 1.01762 1.21096 0.94267 0.97925 0.99857 1.20926 1.00062 0.91968 1.00376 1.20696 0.94355 0.96286 0.99080 1.20786 0.85881 0.92317 0.91886 0.88122 1.86625 1.30993 1.62035 1.54684 1.22583 0.96613 0.95309 0.94959 1.60156 1.45672 1.03051 1.19947 1.21558 0.94634 0.99606 0.86284 1.18806 0.94380 0.84720 0.96778 1.20322 0.91232 1.43054 0.95811 0.92194 1.24935 0.98609 0.95103 0.94881 1.70014 1.30538 1.42796 1.09256 0.86656 0.84469 0.78401 0.78782 1.20786 1.21578 1.20005 1.22991 0.96635 1.03511 1.02177 1.22520 1.00500 1.06532 0.90187 1.20866 0.93392 0.97686 1.01161 0.91206 0.91658 0.91542 0.86315 0.86033 0.85940 0.77963 0.95727 0.90975 0.85282 0.90668 0.98971 0.93423 0.92273 0.90496 0.90066 0.92241 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.11 -1.20 10.05 -39.59 -0.40 -1.60 16 5 C -0.12 -1.37 9.33 -39.59 -0.37 -1.73 16 6 C -0.10 -1.31 5.00 -104.62 -0.52 -1.83 16 7 C 0.15 2.13 3.42 -27.88 -0.10 2.03 16 8 H 0.10 1.37 8.05 -51.93 -0.42 0.95 16 9 O -0.54 -8.49 13.00 -35.23 -0.46 -8.95 16 10 C 0.04 0.57 5.32 -3.82 -0.02 0.55 16 11 N -0.66 -12.90 6.24 -113.79 -0.71 -13.61 16 12 C 0.11 2.42 5.51 -3.83 -0.02 2.40 16 13 C 0.05 1.33 1.55 -155.66 -0.24 1.09 16 14 C -0.47 -12.87 8.74 -34.44 -0.30 -13.17 16 15 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 16 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 17 N -0.89 -25.41 12.92 55.43 0.72 -24.69 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.22 -4.75 9.96 -26.69 -0.27 -5.02 16 23 C -0.16 -3.80 9.41 -26.70 -0.25 -4.05 16 24 C -0.11 -1.30 9.34 -39.58 -0.37 -1.67 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.31 6.62 -52.49 -0.35 0.96 16 31 H 0.37 5.00 7.40 45.56 0.34 5.34 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.33 6.14 8.79 -39.29 -0.35 5.79 16 35 H 0.07 1.89 8.13 -51.93 -0.42 1.47 16 36 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -30.32 352.17 -9.99 -40.31 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.23 Total: 9.94 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.59 Total: -24.97 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.01 Total: -38.30 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.46 Total: -8.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.32 -9.99 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905250441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.556 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds