Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 120.00321 * 2 1 4 4 C 1.38211 * 120.00325 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99820 * 359.75060 * 4 3 2 6 6 C 1.38212 * 120.00128 * 0.49997 * 5 4 3 7 7 C 1.50704 * 120.00134 * 179.76578 * 6 5 4 8 8 H 1.09001 * 109.47180 * 204.73032 * 7 6 5 9 9 O 1.42899 * 109.47363 * 324.73396 * 7 6 5 10 10 C 1.52999 * 109.46825 * 84.73384 * 7 6 5 11 11 N 1.46899 * 109.47311 * 179.97438 * 10 7 6 12 12 C 1.46898 * 111.00263 * 179.97438 * 11 10 7 13 13 C 1.52996 * 109.47224 * 185.35066 * 12 11 10 14 14 C 1.50708 * 115.54865 * 65.04919 * 13 12 11 15 15 H 1.07999 * 120.00061 * 265.44265 * 14 13 12 16 16 C 1.37880 * 119.99865 * 85.44900 * 14 13 12 17 17 N 1.31513 * 120.00017 * 353.59055 * 16 14 13 18 18 Si 1.86796 * 119.99505 * 173.59506 * 16 14 13 19 19 H 1.48501 * 109.47225 * 90.00203 * 18 16 14 20 20 H 1.48503 * 109.46789 * 209.99420 * 18 16 14 21 21 H 1.48497 * 109.47461 * 329.99370 * 18 16 14 22 22 C 1.53002 * 117.50139 * 279.38150 * 13 12 11 23 23 C 1.52995 * 117.50251 * 210.71867 * 13 12 11 24 24 C 1.38214 * 120.00216 * 179.97438 * 2 1 3 25 25 H 1.08991 * 109.47088 * 270.02183 * 1 2 3 26 26 H 1.09004 * 109.46841 * 30.02508 * 1 2 3 27 27 H 1.08999 * 109.46616 * 150.01991 * 1 2 3 28 28 H 1.08007 * 119.99715 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.00083 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.99951 * 180.27724 * 5 4 3 31 31 H 0.96702 * 113.99972 * 59.99133 * 9 7 6 32 32 H 1.08997 * 109.47593 * 60.00013 * 10 7 6 33 33 H 1.09001 * 109.46954 * 299.99786 * 10 7 6 34 34 H 1.00902 * 111.00104 * 303.95601 * 11 10 7 35 35 H 1.08998 * 109.47109 * 305.35084 * 12 11 10 36 36 H 1.08996 * 109.47032 * 65.35129 * 12 11 10 37 37 H 0.96994 * 119.99624 * 180.02562 * 17 16 14 38 38 H 1.08997 * 117.49411 * 359.97438 * 22 13 12 39 39 H 1.09001 * 117.50253 * 145.01879 * 22 13 12 40 40 H 1.08998 * 117.50185 * 214.98101 * 23 13 12 41 41 H 1.09007 * 117.49500 * 359.97438 * 23 13 12 42 42 H 1.07997 * 119.99448 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5807 -1.1969 0.0010 7 6 4.3342 -2.5021 0.0020 8 1 3.7094 -3.2826 -0.4321 9 8 5.5284 -2.3632 -0.7704 10 6 4.6975 -2.8801 1.4393 11 7 5.4314 -4.1526 1.4404 12 6 5.7981 -4.5477 2.8069 13 6 6.6725 -5.8023 2.7578 14 6 8.0167 -5.6322 2.0978 15 1 8.1389 -5.8719 1.0519 16 6 9.0904 -5.1708 2.8294 17 7 8.9155 -4.7600 4.0665 18 14 10.7936 -5.1292 2.0634 19 1 11.0040 -3.8197 1.3953 20 1 11.8175 -5.3143 3.1230 21 1 10.9134 -6.2202 1.0633 22 6 5.9669 -7.1490 2.5867 23 6 6.5822 -6.7730 3.9369 24 6 2.1981 -1.1969 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6584 2.1327 -0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3517 0.0000 0.0112 31 1 6.1331 -1.6843 -0.4410 32 1 3.7866 -2.9861 2.0285 33 1 5.3223 -2.0995 1.8734 34 1 4.8983 -4.8780 0.9847 35 1 6.3509 -3.7380 3.2833 36 1 4.8946 -4.7568 3.3795 37 1 9.6708 -4.4351 4.5809 38 1 4.8797 -7.1412 2.5096 39 1 6.4749 -7.9122 1.9972 40 1 7.4949 -7.2889 4.2351 41 1 5.9002 -6.5176 4.7479 42 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905250441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -26.545991 kcal Electronic energy + Delta-G solvation = -20806.058303 eV Core-core repulsion = 17750.433414 eV Total energy + Delta-G solvation = -3055.624889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71903 -38.92940 -38.00125 -35.35170 -33.87491 -33.56778 -32.50944 -29.27618 -27.74361 -27.50766 -25.73717 -23.63478 -23.07245 -22.76316 -21.38607 -20.81045 -18.31541 -18.05386 -17.15045 -16.82259 -16.57267 -16.20156 -15.85490 -15.47006 -15.23230 -14.91930 -14.76524 -14.58374 -14.18783 -13.98766 -13.58201 -13.28435 -13.03349 -12.97626 -12.87908 -12.83920 -12.58436 -12.46472 -12.32149 -12.05569 -12.01080 -11.80877 -11.42730 -10.91497 -10.72213 -10.35466 -9.92007 -9.71898 -9.51369 -9.03473 -8.02264 -6.07929 0.38224 0.46251 1.43669 1.44996 1.54526 2.49441 2.75997 3.19253 3.27771 3.58933 3.60633 3.87058 3.96092 4.04276 4.09912 4.22325 4.24900 4.39867 4.50584 4.53166 4.56083 4.66333 4.73522 4.74193 4.81953 4.84134 4.91973 4.99566 5.01728 5.07550 5.14243 5.28468 5.30091 5.54641 5.64524 5.65007 5.67708 5.75613 5.89190 6.10293 6.32594 6.51443 6.70093 6.84686 6.95102 7.57080 9.06782 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.003897 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.627655 B = 7183.428333 C = 7865.019616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.132 4.132 6 C -0.118 4.118 7 C 0.161 3.839 8 H 0.106 0.894 9 O -0.558 6.558 10 C 0.042 3.958 11 N -0.670 5.670 12 C 0.123 3.877 13 C 0.026 3.974 14 C -0.478 4.478 15 H 0.046 0.954 16 C 0.022 3.978 17 N -0.913 5.913 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.188 4.188 23 C -0.166 4.166 24 C -0.125 4.125 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.379 0.621 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.337 0.663 35 H 0.040 0.960 36 H 0.006 0.994 37 H 0.255 0.745 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 11.152 -7.060 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.119 4.119 7 C 0.102 3.898 8 H 0.124 0.876 9 O -0.364 6.364 10 C -0.087 4.087 11 N -0.301 5.301 12 C -0.006 4.006 13 C 0.026 3.974 14 C -0.517 4.517 15 H 0.064 0.936 16 C -0.177 4.177 17 N -0.552 5.552 18 Si 0.771 3.229 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.225 4.225 23 C -0.205 4.205 24 C -0.143 4.143 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.228 0.772 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.710 11.042 -7.380 20.572 hybrid contribution 0.739 0.110 0.782 1.081 sum -14.972 11.152 -6.598 19.800 Atomic orbital electron populations 1.20833 0.89279 1.03715 1.03050 1.20260 0.97562 0.92821 0.98785 1.21380 0.94313 0.98409 1.00641 1.21389 0.94857 0.98227 0.99283 1.21105 1.00486 0.92440 1.01010 1.20573 0.94879 0.95593 1.00878 1.20686 0.85500 0.93528 0.90134 0.87643 1.86582 1.31891 1.62580 1.55346 1.22563 0.96283 0.93175 0.96709 1.60037 1.47138 1.04487 1.18395 1.21193 0.94279 0.97341 0.87767 1.18914 0.94318 0.86639 0.97577 1.20531 0.93064 1.42763 0.95306 0.93619 1.25562 1.01706 0.95041 0.95366 1.70111 1.31219 1.43641 1.10225 0.85777 0.80746 0.78320 0.78046 1.20540 1.21212 1.19738 1.22978 0.98150 1.01335 1.00071 1.22440 1.00175 1.06650 0.91187 1.21082 0.93070 0.98839 1.01332 0.90479 0.90246 0.90955 0.83903 0.84104 0.85711 0.77171 0.94592 0.92275 0.84471 0.94128 0.97627 0.93565 0.89228 0.90663 0.92448 0.91054 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.77 5.88 -19.86 -0.12 -1.88 16 3 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 4 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 5 C -0.13 -3.05 9.33 22.27 0.21 -2.85 16 6 C -0.12 -2.90 5.00 -19.87 -0.10 -3.00 16 7 C 0.16 4.46 3.42 29.85 0.10 4.56 16 8 H 0.11 2.77 8.05 -2.39 -0.02 2.75 16 9 O -0.56 -17.57 13.00 -148.98 -1.94 -19.51 16 10 C 0.04 1.35 5.32 86.30 0.46 1.81 16 11 N -0.67 -26.01 6.24 -513.91 -3.21 -29.22 16 12 C 0.12 5.54 5.51 86.30 0.48 6.01 16 13 C 0.03 1.29 1.55 -52.93 -0.08 1.21 16 14 C -0.48 -26.68 8.74 25.60 0.22 -26.45 16 15 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 16 C 0.02 1.23 5.39 84.66 0.46 1.69 16 17 N -0.91 -53.05 12.92 21.45 0.28 -52.77 16 18 Si 0.94 44.94 29.54 68.60 2.03 46.97 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.19 -8.00 9.96 30.62 0.30 -7.69 16 23 C -0.17 -7.89 9.41 30.62 0.29 -7.60 16 24 C -0.13 -2.71 9.34 22.27 0.21 -2.50 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.13 2.67 6.62 -2.91 -0.02 2.65 16 31 H 0.38 10.36 7.40 -74.06 -0.55 9.81 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.34 12.17 8.79 -89.69 -0.79 11.39 16 35 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 36 H 0.01 0.24 8.09 -2.39 -0.02 0.22 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -64.39 352.17 0.41 -63.99 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.33 Total: 32.18 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 3.58 Total: -41.64 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.93 Total: -81.98 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -1.94 Total: -19.51 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.39 0.41 -63.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905250441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.439 kcal (2) G-P(sol) polarization free energy of solvation -64.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds