Wall clock time and date at job start Mon Mar 30 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38258 * 120.00021 * 2 1 4 4 C 1.38219 * 120.00163 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.38213 * 119.99762 * 359.96597 * 5 4 3 7 7 C 1.50706 * 119.99654 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46703 * 160.00101 * 7 6 5 9 9 O 1.42896 * 109.47235 * 40.00000 * 7 6 5 10 10 C 1.53000 * 109.47181 * 279.99638 * 7 6 5 11 11 N 1.46894 * 109.47241 * 185.00267 * 10 7 6 12 12 C 1.46898 * 110.99991 * 180.02562 * 11 10 7 13 13 C 1.53004 * 109.46985 * 185.35069 * 12 11 10 14 14 C 1.50696 * 115.55278 * 65.04956 * 13 12 11 15 15 H 1.07998 * 119.99778 * 265.44586 * 14 13 12 16 16 C 1.37876 * 120.00151 * 85.43956 * 14 13 12 17 17 N 1.31514 * 120.00307 * 353.60225 * 16 14 13 18 18 Si 1.86799 * 120.00030 * 173.59842 * 16 14 13 19 19 H 1.48510 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47296 * 120.00269 * 18 16 14 21 21 H 1.48501 * 109.47128 * 240.00375 * 18 16 14 22 22 C 1.52995 * 117.49707 * 279.37602 * 13 12 11 23 23 C 1.53003 * 117.49591 * 210.71714 * 13 12 11 24 24 C 1.38211 * 120.00378 * 180.20824 * 2 1 3 25 25 H 1.09000 * 109.47559 * 90.00262 * 1 2 3 26 26 H 1.08997 * 109.47179 * 210.00265 * 1 2 3 27 27 H 1.08998 * 109.47228 * 329.99993 * 1 2 3 28 28 H 1.07997 * 119.99966 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00395 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00237 * 179.97438 * 5 4 3 31 31 H 0.96705 * 113.99820 * 299.99920 * 9 7 6 32 32 H 1.08998 * 109.47240 * 305.00371 * 10 7 6 33 33 H 1.09001 * 109.46582 * 64.99932 * 10 7 6 34 34 H 1.00898 * 111.00259 * 303.95354 * 11 10 7 35 35 H 1.09002 * 109.47132 * 305.34897 * 12 11 10 36 36 H 1.09000 * 109.47419 * 65.35135 * 12 11 10 37 37 H 0.97000 * 120.00145 * 179.97438 * 17 16 14 38 38 H 1.09002 * 117.50471 * 0.02562 * 22 13 12 39 39 H 1.09005 * 117.49862 * 145.02415 * 22 13 12 40 40 H 1.09006 * 117.49746 * 214.97636 * 23 13 12 41 41 H 1.08998 * 117.50191 * 359.97438 * 23 13 12 42 42 H 1.08000 * 119.99972 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1969 0.0007 7 6 4.3342 -2.5020 0.0001 8 1 3.6799 -3.2994 0.3527 9 8 5.4672 -2.3983 0.8646 10 6 4.8042 -2.8189 -1.4210 11 7 5.4334 -4.1461 -1.4441 12 6 5.8987 -4.4846 -2.7957 13 6 6.4253 -5.9211 -2.8089 14 6 5.3994 -6.9920 -2.5416 15 1 5.2628 -7.3708 -1.5394 16 6 4.6351 -7.4883 -3.5763 17 7 4.7106 -6.9421 -4.7702 18 14 3.4925 -8.9365 -3.2823 19 1 3.5910 -9.3648 -1.8637 20 1 2.0950 -8.5331 -3.5812 21 1 3.8828 -10.0627 -4.1680 22 6 7.8451 -6.1577 -2.2903 23 6 7.5521 -6.2513 -3.7898 24 6 2.1980 -1.1969 -0.0044 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1326 -0.0004 29 1 4.1204 2.1327 -0.0010 30 1 5.3517 0.0000 -0.0014 31 1 6.0938 -1.7069 0.6105 32 1 3.9491 -2.8104 -2.0969 33 1 5.5272 -2.0683 -1.7403 34 1 6.1894 -4.1995 -0.7779 35 1 5.0701 -4.3950 -3.4983 36 1 6.6972 -3.8022 -3.0867 37 1 4.1732 -7.2915 -5.4983 38 1 8.4039 -5.2901 -1.9393 39 1 8.0373 -7.0882 -1.7560 40 1 7.5516 -7.2434 -4.2414 41 1 7.9179 -5.4454 -4.4260 42 1 1.6581 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905250442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:01 Heat of formation + Delta-G solvation = -10.211654 kcal Electronic energy + Delta-G solvation = -20790.750244 eV Core-core repulsion = 17735.833665 eV Total energy + Delta-G solvation = -3054.916579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83977 -37.54533 -36.61359 -33.81010 -32.81101 -31.80196 -31.57782 -27.98528 -27.01542 -25.53433 -24.24385 -22.34808 -22.11890 -20.95414 -20.42128 -18.92711 -17.31082 -16.36841 -15.98228 -15.85762 -15.04839 -14.79691 -14.45165 -14.06166 -13.93893 -13.83096 -13.47870 -13.29244 -13.15078 -12.69510 -12.39625 -12.21726 -11.85586 -11.75589 -11.42979 -11.18672 -11.17172 -10.90922 -10.84069 -10.59913 -10.40798 -10.15131 -10.01424 -9.38512 -8.87326 -8.74357 -8.69052 -8.32578 -8.01069 -7.51916 -5.91472 -3.92449 1.22642 1.29315 3.35986 3.44018 3.49426 3.61593 4.43056 4.52025 4.52593 4.69983 4.77085 4.98172 5.07250 5.19343 5.33426 5.33861 5.38502 5.41778 5.44518 5.54121 5.58221 5.65469 5.93445 5.94092 6.04679 6.10748 6.23639 6.34553 6.37604 6.46557 6.53383 6.56837 6.68050 6.78759 6.90224 6.92109 7.16255 7.51780 7.61748 7.65586 7.97175 8.02262 8.22836 8.61320 9.07270 9.70526 11.18585 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.004105 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.088668 B = 6819.782985 C = 7727.586390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.102 4.102 7 C 0.147 3.853 8 H 0.118 0.882 9 O -0.551 6.551 10 C 0.038 3.962 11 N -0.665 5.665 12 C 0.108 3.892 13 C 0.053 3.947 14 C -0.467 4.467 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.287 1.287 22 C -0.215 4.215 23 C -0.159 4.159 24 C -0.108 4.108 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.367 0.633 32 H 0.077 0.923 33 H 0.019 0.981 34 H 0.336 0.664 35 H 0.075 0.925 36 H -0.007 1.007 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 16.121 8.164 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.103 4.103 7 C 0.088 3.912 8 H 0.136 0.864 9 O -0.356 6.356 10 C -0.092 4.092 11 N -0.295 5.295 12 C -0.021 4.021 13 C 0.052 3.948 14 C -0.505 4.505 15 H 0.078 0.922 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.252 4.252 23 C -0.197 4.197 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.214 0.786 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.011 0.989 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.616 15.265 8.207 17.935 hybrid contribution 0.427 0.374 -0.537 0.782 sum -4.188 15.639 7.670 17.915 Atomic orbital electron populations 1.20798 0.91177 1.02729 1.02448 1.19920 0.96107 0.93108 0.99418 1.21009 0.94269 0.97414 1.01707 1.21061 0.94316 0.97777 1.00185 1.20851 0.99634 0.92117 1.01146 1.20634 0.94517 0.95964 0.99207 1.20996 0.86734 0.93084 0.90376 0.86447 1.86666 1.34810 1.59561 1.54584 1.22547 0.99512 0.91385 0.95787 1.60204 1.36086 1.24536 1.08690 1.21552 0.97139 0.95075 0.88316 1.18814 0.86316 0.92372 0.97308 1.20364 1.17956 1.18062 0.94140 0.92160 1.24940 0.96628 0.96697 0.95263 1.70022 1.40802 1.40517 1.01173 0.86608 0.80662 0.82890 0.78249 1.19739 1.21274 1.21291 1.22988 1.03904 1.00530 0.97815 1.22521 1.06054 1.00917 0.90231 1.20953 0.93404 0.97947 1.00271 0.91070 0.91380 0.91689 0.86301 0.86154 0.86427 0.78645 0.90416 0.96275 0.84585 0.90664 0.98933 0.93440 0.92227 0.90497 0.90068 0.92234 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.55 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 5 C -0.12 -1.34 9.32 -39.58 -0.37 -1.71 16 6 C -0.10 -1.30 4.97 -104.62 -0.52 -1.82 16 7 C 0.15 2.08 3.44 -27.88 -0.10 1.98 16 8 H 0.12 1.80 8.01 -51.93 -0.42 1.39 16 9 O -0.55 -7.60 12.71 -35.23 -0.45 -8.04 16 10 C 0.04 0.61 5.33 -3.83 -0.02 0.59 16 11 N -0.66 -13.11 6.38 -113.78 -0.73 -13.83 16 12 C 0.11 2.43 5.51 -3.82 -0.02 2.41 16 13 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 14 C -0.47 -12.89 8.74 -34.44 -0.30 -13.19 16 15 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 16 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 17 N -0.89 -25.41 12.92 55.43 0.72 -24.69 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.21 -4.75 9.96 -26.70 -0.27 -5.01 16 23 C -0.16 -3.80 9.41 -26.69 -0.25 -4.05 16 24 C -0.11 -1.32 9.33 -39.58 -0.37 -1.69 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.09 6.79 -52.49 -0.36 0.74 16 31 H 0.37 3.77 7.50 45.56 0.34 4.11 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.34 6.40 8.35 -39.29 -0.33 6.08 16 35 H 0.07 1.90 8.13 -51.93 -0.42 1.47 16 36 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.13 1.46 8.04 -52.49 -0.42 1.03 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -30.12 351.76 -9.98 -40.10 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.21 Total: 9.67 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -3.59 Total: -25.08 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.01 Total: -38.53 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.45 Total: -8.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.12 -9.98 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905250442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.885 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds