Wall clock time and date at job start Mon Mar 30 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38258 * 120.00021 * 2 1 4 4 C 1.38219 * 120.00163 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.38213 * 119.99762 * 359.96597 * 5 4 3 7 7 C 1.50706 * 119.99654 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46703 * 160.00101 * 7 6 5 9 9 O 1.42896 * 109.47235 * 40.00000 * 7 6 5 10 10 C 1.53000 * 109.47181 * 279.99638 * 7 6 5 11 11 N 1.46894 * 109.47241 * 185.00267 * 10 7 6 12 12 C 1.46898 * 110.99991 * 180.02562 * 11 10 7 13 13 C 1.53004 * 109.46985 * 185.35069 * 12 11 10 14 14 C 1.50696 * 115.55278 * 65.04956 * 13 12 11 15 15 H 1.07998 * 119.99778 * 265.44586 * 14 13 12 16 16 C 1.37876 * 120.00151 * 85.43956 * 14 13 12 17 17 N 1.31514 * 120.00307 * 353.60225 * 16 14 13 18 18 Si 1.86799 * 120.00030 * 173.59842 * 16 14 13 19 19 H 1.48510 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47296 * 120.00269 * 18 16 14 21 21 H 1.48501 * 109.47128 * 240.00375 * 18 16 14 22 22 C 1.52995 * 117.49707 * 279.37602 * 13 12 11 23 23 C 1.53003 * 117.49591 * 210.71714 * 13 12 11 24 24 C 1.38211 * 120.00378 * 180.20824 * 2 1 3 25 25 H 1.09000 * 109.47559 * 90.00262 * 1 2 3 26 26 H 1.08997 * 109.47179 * 210.00265 * 1 2 3 27 27 H 1.08998 * 109.47228 * 329.99993 * 1 2 3 28 28 H 1.07997 * 119.99966 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00395 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00237 * 179.97438 * 5 4 3 31 31 H 0.96705 * 113.99820 * 299.99920 * 9 7 6 32 32 H 1.08998 * 109.47240 * 305.00371 * 10 7 6 33 33 H 1.09001 * 109.46582 * 64.99932 * 10 7 6 34 34 H 1.00898 * 111.00259 * 303.95354 * 11 10 7 35 35 H 1.09002 * 109.47132 * 305.34897 * 12 11 10 36 36 H 1.09000 * 109.47419 * 65.35135 * 12 11 10 37 37 H 0.97000 * 120.00145 * 179.97438 * 17 16 14 38 38 H 1.09002 * 117.50471 * 0.02562 * 22 13 12 39 39 H 1.09005 * 117.49862 * 145.02415 * 22 13 12 40 40 H 1.09006 * 117.49746 * 214.97636 * 23 13 12 41 41 H 1.08998 * 117.50191 * 359.97438 * 23 13 12 42 42 H 1.08000 * 119.99972 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1969 0.0007 7 6 4.3342 -2.5020 0.0001 8 1 3.6799 -3.2994 0.3527 9 8 5.4672 -2.3983 0.8646 10 6 4.8042 -2.8189 -1.4210 11 7 5.4334 -4.1461 -1.4441 12 6 5.8987 -4.4846 -2.7957 13 6 6.4253 -5.9211 -2.8089 14 6 5.3994 -6.9920 -2.5416 15 1 5.2628 -7.3708 -1.5394 16 6 4.6351 -7.4883 -3.5763 17 7 4.7106 -6.9421 -4.7702 18 14 3.4925 -8.9365 -3.2823 19 1 3.5910 -9.3648 -1.8637 20 1 2.0950 -8.5331 -3.5812 21 1 3.8828 -10.0627 -4.1680 22 6 7.8451 -6.1577 -2.2903 23 6 7.5521 -6.2513 -3.7898 24 6 2.1980 -1.1969 -0.0044 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1326 -0.0004 29 1 4.1204 2.1327 -0.0010 30 1 5.3517 0.0000 -0.0014 31 1 6.0938 -1.7069 0.6105 32 1 3.9491 -2.8104 -2.0969 33 1 5.5272 -2.0683 -1.7403 34 1 6.1894 -4.1995 -0.7779 35 1 5.0701 -4.3950 -3.4983 36 1 6.6972 -3.8022 -3.0867 37 1 4.1732 -7.2915 -5.4983 38 1 8.4039 -5.2901 -1.9393 39 1 8.0373 -7.0882 -1.7560 40 1 7.5516 -7.2434 -4.2414 41 1 7.9179 -5.4454 -4.4260 42 1 1.6581 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905250442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:01 Heat of formation + Delta-G solvation = -28.905282 kcal Electronic energy + Delta-G solvation = -20791.560861 eV Core-core repulsion = 17735.833665 eV Total energy + Delta-G solvation = -3055.727196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74841 -38.96261 -38.08157 -35.32635 -33.88918 -33.61051 -32.52079 -29.29860 -27.76799 -27.52862 -25.77698 -23.59950 -23.08209 -22.76329 -21.40790 -20.82855 -18.33025 -18.06904 -17.15718 -16.93516 -16.60270 -16.30823 -15.80134 -15.43293 -15.23252 -14.94889 -14.76108 -14.59478 -14.24954 -13.98237 -13.58618 -13.28886 -13.05302 -12.98834 -12.89612 -12.86826 -12.61504 -12.51009 -12.32037 -12.06462 -12.01343 -11.82162 -11.44786 -10.98794 -10.73446 -10.36765 -9.92605 -9.73314 -9.51921 -9.08071 -8.03721 -6.09700 0.37704 0.46080 1.41005 1.43848 1.54772 2.48091 2.75717 3.19389 3.26408 3.50951 3.59891 3.89487 3.91660 4.01830 4.13005 4.19611 4.24113 4.39662 4.49911 4.53306 4.55288 4.67142 4.71039 4.75357 4.81498 4.83748 4.91323 4.99659 5.03181 5.07298 5.12799 5.28301 5.29556 5.53665 5.63329 5.64595 5.68711 5.74711 5.88103 6.10160 6.31981 6.50992 6.71571 6.78098 6.93945 7.55583 9.05609 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.004105 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.088668 B = 6819.782985 C = 7727.586390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.118 4.118 7 C 0.162 3.838 8 H 0.097 0.903 9 O -0.561 6.561 10 C 0.045 3.955 11 N -0.677 5.677 12 C 0.123 3.877 13 C 0.024 3.976 14 C -0.480 4.480 15 H 0.046 0.954 16 C 0.022 3.978 17 N -0.913 5.913 18 Si 0.944 3.056 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.282 1.282 22 C -0.188 4.188 23 C -0.165 4.165 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.383 0.617 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.342 0.658 35 H 0.040 0.960 36 H 0.007 0.993 37 H 0.256 0.744 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 17.883 9.106 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.119 4.119 7 C 0.103 3.897 8 H 0.115 0.885 9 O -0.368 6.368 10 C -0.085 4.085 11 N -0.308 5.308 12 C -0.006 4.006 13 C 0.024 3.976 14 C -0.518 4.518 15 H 0.064 0.936 16 C -0.177 4.177 17 N -0.552 5.552 18 Si 0.771 3.229 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.208 1.208 22 C -0.225 4.225 23 C -0.204 4.204 24 C -0.148 4.148 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.232 0.768 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.161 0.839 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.408 17.036 9.163 19.840 hybrid contribution 0.378 -0.116 -0.795 0.888 sum -4.030 16.921 8.367 19.302 Atomic orbital electron populations 1.20839 0.89657 1.03623 1.02953 1.20227 0.97419 0.92905 0.98931 1.21390 0.94644 0.98093 1.00536 1.21431 0.94607 0.98466 0.99047 1.21115 1.00710 0.91883 1.00838 1.20523 0.94654 0.95708 1.01025 1.20644 0.86725 0.93600 0.88765 0.88491 1.86628 1.35121 1.60557 1.54488 1.22520 0.98922 0.90028 0.97055 1.60074 1.36293 1.27085 1.07354 1.21193 0.96076 0.94237 0.89090 1.18928 0.86906 0.92868 0.98943 1.20576 1.18791 1.18925 0.93483 0.93552 1.25574 0.98081 0.98888 0.95174 1.70117 1.41716 1.41632 1.01737 0.85722 0.78882 0.80189 0.78121 1.19489 1.21083 1.20836 1.22974 1.01802 1.01539 0.96162 1.22439 1.06412 1.00055 0.91444 1.21095 0.93658 0.98604 1.01436 0.90672 0.91405 0.89930 0.83815 0.83502 0.84633 0.76780 0.92102 0.94540 0.83939 0.94154 0.97455 0.93528 0.89241 0.90648 0.92439 0.91003 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.23 0.71 -1.05 16 2 C -0.09 -1.95 5.88 -19.87 -0.12 -2.07 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 5 C -0.13 -2.61 9.32 22.27 0.21 -2.41 16 6 C -0.12 -2.93 4.97 -19.86 -0.10 -3.03 16 7 C 0.16 4.55 3.44 29.85 0.10 4.65 16 8 H 0.10 3.09 8.01 -2.39 -0.02 3.07 16 9 O -0.56 -14.77 12.71 -148.98 -1.89 -16.66 16 10 C 0.04 1.43 5.33 86.30 0.46 1.88 16 11 N -0.68 -26.57 6.38 -513.90 -3.28 -29.85 16 12 C 0.12 5.55 5.51 86.30 0.48 6.03 16 13 C 0.02 1.20 1.55 -52.93 -0.08 1.11 16 14 C -0.48 -26.78 8.74 25.60 0.22 -26.56 16 15 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 16 C 0.02 1.21 5.39 84.65 0.46 1.67 16 17 N -0.91 -53.19 12.92 21.45 0.28 -52.91 16 18 Si 0.94 44.92 29.54 68.60 2.03 46.95 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 C -0.19 -8.00 9.96 30.62 0.30 -7.70 16 23 C -0.17 -7.84 9.41 30.62 0.29 -7.55 16 24 C -0.13 -3.19 9.33 22.27 0.21 -2.98 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.08 0.96 8.09 -2.39 -0.02 0.95 16 28 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.14 2.16 6.79 -2.91 -0.02 2.14 16 31 H 0.38 7.08 7.50 -74.05 -0.56 6.52 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.34 12.67 8.35 -89.70 -0.75 11.92 16 35 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 36 H 0.01 0.31 8.09 -2.39 -0.02 0.29 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 40 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 41 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.12 2.92 8.04 -2.91 -0.02 2.90 16 Total: -1.00 -64.56 351.76 0.41 -64.14 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.30 Total: 30.27 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 3.58 Total: -41.94 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -3.00 Total: -82.76 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.89 Total: -16.66 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.56 0.41 -64.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905250442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.238 kcal (2) G-P(sol) polarization free energy of solvation -64.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds