Wall clock time and date at job start Mon Mar 30 2020 02:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00108 * 2 1 4 4 C 1.38755 * 120.05684 * 0.30286 * 3 2 1 5 5 C 1.38125 * 119.94189 * 180.21385 * 4 3 2 6 6 C 1.38280 * 120.05805 * 359.50241 * 5 4 3 7 7 C 1.50700 * 119.94786 * 180.26018 * 6 5 4 8 8 N 1.46898 * 109.47270 * 260.00710 * 7 6 5 9 9 C 1.46899 * 111.00496 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47563 * 185.35084 * 9 8 7 11 11 C 1.50698 * 115.55142 * 65.04681 * 10 9 8 12 12 H 1.08003 * 119.99954 * 265.45115 * 11 10 9 13 13 C 1.37879 * 120.00241 * 85.44541 * 11 10 9 14 14 N 1.31509 * 120.00016 * 353.59870 * 13 11 10 15 15 Si 1.86799 * 120.00187 * 173.59959 * 13 11 10 16 16 H 1.48499 * 109.47069 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47357 * 120.00147 * 15 13 11 18 18 H 1.48501 * 109.46778 * 240.00291 * 15 13 11 19 19 C 1.52999 * 117.49717 * 279.37803 * 10 9 8 20 20 C 1.52999 * 117.49802 * 210.71558 * 10 9 8 21 21 C 1.38246 * 120.11091 * 0.24553 * 6 5 4 22 22 C 1.50705 * 119.97188 * 180.02562 * 21 6 5 23 23 C 1.38167 * 120.05717 * 359.97438 * 21 6 5 24 24 H 1.08993 * 109.47468 * 60.00044 * 1 2 3 25 25 H 1.09000 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46709 * 300.00023 * 1 2 3 27 27 H 1.07995 * 120.02601 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96912 * 179.78862 * 5 4 3 29 29 H 1.09008 * 109.46639 * 20.00170 * 7 6 5 30 30 H 1.08996 * 109.47457 * 140.00210 * 7 6 5 31 31 H 1.00907 * 111.00103 * 303.95322 * 8 7 6 32 32 H 1.09001 * 109.46524 * 305.34913 * 9 8 7 33 33 H 1.08998 * 109.47242 * 65.34540 * 9 8 7 34 34 H 0.96997 * 120.00430 * 180.02562 * 14 13 11 35 35 H 1.08996 * 117.50105 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.49824 * 145.02329 * 19 10 9 37 37 H 1.08998 * 117.50127 * 214.97283 * 20 10 9 38 38 H 1.08998 * 117.49860 * 359.97438 * 20 10 9 39 39 H 1.08996 * 109.47440 * 89.99270 * 22 21 6 40 40 H 1.09003 * 109.46994 * 209.99770 * 22 21 6 41 41 H 1.09004 * 109.46688 * 329.99367 * 22 21 6 42 42 H 1.07997 * 120.02633 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9210 3.6047 0.0019 6 6 3.3020 3.6757 0.0015 7 6 3.9862 5.0184 0.0025 8 7 4.4222 5.3469 -1.3613 9 6 5.0945 6.6525 -1.3991 10 6 5.4142 7.0198 -2.8495 11 6 4.2204 7.2441 -3.7414 12 1 3.8389 6.4351 -4.3467 13 6 3.6150 8.4822 -3.7846 14 7 3.9974 9.4304 -2.9576 15 14 2.2516 8.8126 -5.0180 16 1 2.0105 7.5918 -5.8283 17 1 1.0081 9.1807 -4.2946 18 1 2.6528 9.9283 -5.9122 19 6 6.6586 6.3912 -3.4796 20 6 6.6569 7.8752 -3.1041 21 6 4.0560 2.5170 0.0004 22 6 5.5609 2.5980 0.0005 23 6 3.4311 1.2847 0.0003 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2129 2.3203 0.0109 28 1 1.3341 4.5113 0.0034 29 1 3.2908 5.7803 0.3550 30 1 4.8528 4.9841 0.6627 31 1 5.0171 4.6226 -1.7351 32 1 4.4405 7.4104 -0.9680 33 1 6.0196 6.6016 -0.8248 34 1 3.5714 10.3013 -2.9877 35 1 7.2498 5.7163 -2.8608 36 1 6.6139 6.1403 -4.5394 37 1 6.6112 8.5999 -3.9171 38 1 7.2465 8.1766 -2.2383 39 1 5.9237 2.6167 1.0282 40 1 5.9715 1.7293 -0.5141 41 1 5.8758 3.5067 -0.5126 42 1 4.0207 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922084673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:34 Heat of formation + Delta-G solvation = 8.257605 kcal Electronic energy + Delta-G solvation = -20985.297920 eV Core-core repulsion = 17931.182228 eV Total energy + Delta-G solvation = -3054.115692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17770 -38.13352 -36.82195 -34.28297 -32.40141 -31.79334 -30.55661 -28.07233 -26.58311 -25.93563 -25.00017 -22.94989 -21.97991 -21.01167 -20.37500 -18.93869 -17.70641 -16.52009 -16.20951 -15.78879 -15.31149 -14.68272 -14.41938 -14.12679 -14.01371 -13.89083 -13.42672 -13.23884 -13.10751 -12.87781 -12.23745 -12.19530 -11.99723 -11.79882 -11.43478 -11.22823 -10.94415 -10.91046 -10.80674 -10.63838 -10.58427 -10.39241 -10.12326 -9.40846 -8.74747 -8.67201 -8.33005 -8.09827 -7.91804 -7.46006 -5.91384 -3.92098 1.43495 1.56170 3.23303 3.35755 3.43801 3.49227 3.81737 4.51724 4.81576 4.88200 4.96902 5.01288 5.03821 5.20058 5.27826 5.32865 5.38800 5.43312 5.45482 5.54067 5.66106 5.75330 5.88345 5.97308 6.09468 6.19827 6.24061 6.37970 6.40627 6.52258 6.55252 6.66716 6.77742 6.83260 6.90353 6.93276 7.16152 7.42420 7.51624 7.62617 7.99027 8.02451 8.20971 8.61241 9.07320 9.70769 11.18644 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.004455 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.592685 B = 6283.656571 C = 7251.485687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.120 3.880 4 C -0.213 4.213 5 C -0.057 4.057 6 C -0.103 4.103 7 C 0.100 3.900 8 N -0.663 5.663 9 C 0.107 3.893 10 C 0.053 3.947 11 C -0.466 4.466 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.216 4.216 20 C -0.158 4.158 21 C -0.043 4.043 22 C -0.118 4.118 23 C -0.154 4.154 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.330 0.670 32 H 0.077 0.923 33 H -0.006 1.006 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -14.695 8.514 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.075 3.925 4 C -0.232 4.232 5 C -0.075 4.075 6 C -0.103 4.103 7 C -0.029 4.029 8 N -0.294 5.294 9 C -0.022 4.022 10 C 0.052 3.948 11 C -0.505 4.505 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.254 4.254 20 C -0.197 4.197 21 C -0.043 4.043 22 C -0.174 4.174 23 C -0.173 4.173 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.148 0.852 32 H 0.095 0.905 33 H 0.012 0.988 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.290 -14.420 8.375 16.997 hybrid contribution -0.255 0.267 -0.250 0.446 sum -3.545 -14.152 8.125 16.700 Atomic orbital electron populations 1.23007 0.78707 1.03535 1.01403 1.86027 1.21148 1.27295 1.89098 1.18943 0.92250 0.83930 0.97373 1.21169 0.99729 0.92379 1.09901 1.20858 0.94003 0.96985 0.95685 1.19710 0.93510 0.94651 1.02476 1.20813 0.97851 0.92737 0.91490 1.60364 1.46553 1.04567 1.17895 1.21571 0.93994 0.89487 0.97128 1.18818 0.87851 0.96649 0.91458 1.20352 1.11563 0.95692 1.22847 0.92246 1.24925 0.96654 0.96349 0.95527 1.70014 1.42348 1.03811 1.36282 0.86620 0.82158 0.78071 0.81632 1.19814 1.21274 1.21304 1.22994 1.06237 0.95984 1.00143 1.22517 1.03889 0.91867 1.01384 1.19540 0.95857 0.91744 0.97199 1.20869 0.91071 1.03164 1.02325 1.20159 0.91193 0.97825 1.08086 0.92627 0.88563 0.92816 0.85807 0.85502 0.90626 0.95455 0.85168 0.90504 0.98807 0.93445 0.92247 0.90540 0.90092 0.92182 0.91088 0.91301 0.91076 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.01 10.50 -19.41 -0.20 -4.22 16 3 C 0.12 1.64 6.69 -39.21 -0.26 1.38 16 4 C -0.21 -2.84 9.04 -39.43 -0.36 -3.20 16 5 C -0.06 -0.83 9.66 -39.61 -0.38 -1.22 16 6 C -0.10 -1.57 5.39 -104.60 -0.56 -2.14 16 7 C 0.10 1.65 5.03 -4.98 -0.03 1.62 16 8 N -0.66 -13.01 6.34 -115.06 -0.73 -13.74 16 9 C 0.11 2.36 5.51 -3.83 -0.02 2.34 16 10 C 0.05 1.29 1.55 -155.66 -0.24 1.05 16 11 C -0.47 -12.80 8.74 -34.44 -0.30 -13.10 16 12 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 13 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 14 N -0.89 -25.22 12.92 55.43 0.72 -24.51 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C -0.22 -4.71 9.96 -26.69 -0.27 -4.97 16 20 C -0.16 -3.74 9.41 -26.69 -0.25 -3.99 16 21 C -0.04 -0.60 5.87 -104.64 -0.61 -1.21 16 22 C -0.12 -1.39 9.22 36.01 0.33 -1.06 16 23 C -0.15 -2.09 9.64 -39.43 -0.38 -2.47 16 24 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 28 H 0.13 1.78 8.03 -52.49 -0.42 1.36 16 29 H 0.08 1.28 8.00 -51.92 -0.42 0.86 16 30 H 0.03 0.42 7.27 -51.93 -0.38 0.04 16 31 H 0.33 6.16 7.03 -39.29 -0.28 5.88 16 32 H 0.08 1.90 8.13 -51.93 -0.42 1.48 16 33 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 41 H 0.07 0.92 5.26 -51.93 -0.27 0.65 16 42 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -29.77 346.09 -9.12 -38.89 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.66 Total: 5.75 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.44 Total: -23.98 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.01 Total: -38.24 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.77 -9.12 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922084673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.150 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds