Wall clock time and date at job start Mon Mar 30 2020 02:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00108 * 2 1 4 4 C 1.38755 * 120.05684 * 0.30286 * 3 2 1 5 5 C 1.38125 * 119.94189 * 180.21385 * 4 3 2 6 6 C 1.38280 * 120.05805 * 359.50241 * 5 4 3 7 7 C 1.50700 * 119.94786 * 180.26018 * 6 5 4 8 8 N 1.46898 * 109.47270 * 260.00710 * 7 6 5 9 9 C 1.46899 * 111.00496 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47563 * 185.35084 * 9 8 7 11 11 C 1.50698 * 115.55142 * 65.04681 * 10 9 8 12 12 H 1.08003 * 119.99954 * 265.45115 * 11 10 9 13 13 C 1.37879 * 120.00241 * 85.44541 * 11 10 9 14 14 N 1.31509 * 120.00016 * 353.59870 * 13 11 10 15 15 Si 1.86799 * 120.00187 * 173.59959 * 13 11 10 16 16 H 1.48499 * 109.47069 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47357 * 120.00147 * 15 13 11 18 18 H 1.48501 * 109.46778 * 240.00291 * 15 13 11 19 19 C 1.52999 * 117.49717 * 279.37803 * 10 9 8 20 20 C 1.52999 * 117.49802 * 210.71558 * 10 9 8 21 21 C 1.38246 * 120.11091 * 0.24553 * 6 5 4 22 22 C 1.50705 * 119.97188 * 180.02562 * 21 6 5 23 23 C 1.38167 * 120.05717 * 359.97438 * 21 6 5 24 24 H 1.08993 * 109.47468 * 60.00044 * 1 2 3 25 25 H 1.09000 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46709 * 300.00023 * 1 2 3 27 27 H 1.07995 * 120.02601 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96912 * 179.78862 * 5 4 3 29 29 H 1.09008 * 109.46639 * 20.00170 * 7 6 5 30 30 H 1.08996 * 109.47457 * 140.00210 * 7 6 5 31 31 H 1.00907 * 111.00103 * 303.95322 * 8 7 6 32 32 H 1.09001 * 109.46524 * 305.34913 * 9 8 7 33 33 H 1.08998 * 109.47242 * 65.34540 * 9 8 7 34 34 H 0.96997 * 120.00430 * 180.02562 * 14 13 11 35 35 H 1.08996 * 117.50105 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.49824 * 145.02329 * 19 10 9 37 37 H 1.08998 * 117.50127 * 214.97283 * 20 10 9 38 38 H 1.08998 * 117.49860 * 359.97438 * 20 10 9 39 39 H 1.08996 * 109.47440 * 89.99270 * 22 21 6 40 40 H 1.09003 * 109.46994 * 209.99770 * 22 21 6 41 41 H 1.09004 * 109.46688 * 329.99367 * 22 21 6 42 42 H 1.07997 * 120.02633 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9210 3.6047 0.0019 6 6 3.3020 3.6757 0.0015 7 6 3.9862 5.0184 0.0025 8 7 4.4222 5.3469 -1.3613 9 6 5.0945 6.6525 -1.3991 10 6 5.4142 7.0198 -2.8495 11 6 4.2204 7.2441 -3.7414 12 1 3.8389 6.4351 -4.3467 13 6 3.6150 8.4822 -3.7846 14 7 3.9974 9.4304 -2.9576 15 14 2.2516 8.8126 -5.0180 16 1 2.0105 7.5918 -5.8283 17 1 1.0081 9.1807 -4.2946 18 1 2.6528 9.9283 -5.9122 19 6 6.6586 6.3912 -3.4796 20 6 6.6569 7.8752 -3.1041 21 6 4.0560 2.5170 0.0004 22 6 5.5609 2.5980 0.0005 23 6 3.4311 1.2847 0.0003 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2129 2.3203 0.0109 28 1 1.3341 4.5113 0.0034 29 1 3.2908 5.7803 0.3550 30 1 4.8528 4.9841 0.6627 31 1 5.0171 4.6226 -1.7351 32 1 4.4405 7.4104 -0.9680 33 1 6.0196 6.6016 -0.8248 34 1 3.5714 10.3013 -2.9877 35 1 7.2498 5.7163 -2.8608 36 1 6.6139 6.1403 -4.5394 37 1 6.6112 8.5999 -3.9171 38 1 7.2465 8.1766 -2.2383 39 1 5.9237 2.6167 1.0282 40 1 5.9715 1.7293 -0.5141 41 1 5.8758 3.5067 -0.5126 42 1 4.0207 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922084673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:34 Heat of formation + Delta-G solvation = -8.464421 kcal Electronic energy + Delta-G solvation = -20986.023041 eV Core-core repulsion = 17931.182228 eV Total energy + Delta-G solvation = -3054.840813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17947 -39.27406 -38.47599 -35.74450 -33.88127 -33.42031 -31.73271 -29.05381 -27.71241 -27.43600 -26.66904 -24.41747 -23.09902 -22.78389 -21.46836 -20.83833 -18.64465 -18.14269 -17.43544 -16.87573 -16.63048 -16.44853 -15.86119 -15.57915 -15.33166 -15.08853 -14.72808 -14.60094 -14.25970 -14.15763 -13.67405 -13.21323 -13.13040 -13.00972 -12.90564 -12.87924 -12.62192 -12.56025 -12.35664 -12.12587 -11.95613 -11.75750 -11.66012 -11.28770 -10.71589 -10.35605 -9.90643 -9.70497 -9.14891 -8.89486 -8.02260 -6.07697 0.39273 0.47083 1.40858 1.43910 1.54377 2.38952 2.48731 2.72822 3.27788 3.43383 3.75510 3.84872 3.91981 4.04270 4.21815 4.30779 4.38231 4.40226 4.45133 4.46886 4.55142 4.66253 4.71263 4.75048 4.77093 4.79755 4.87880 4.89976 5.01649 5.05473 5.10225 5.20615 5.30861 5.37660 5.47722 5.66683 5.76351 5.77528 5.85026 5.90453 6.37031 6.47879 6.53540 6.76735 6.95558 7.57244 9.06940 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.004455 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.592685 B = 6283.656571 C = 7251.485687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.216 4.216 5 C -0.072 4.072 6 C -0.123 4.123 7 C 0.107 3.893 8 N -0.674 5.674 9 C 0.123 3.877 10 C 0.025 3.975 11 C -0.478 4.478 12 H 0.044 0.956 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.942 3.058 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.283 1.283 19 C -0.189 4.189 20 C -0.165 4.165 21 C -0.044 4.044 22 C -0.116 4.116 23 C -0.163 4.163 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.145 0.855 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.337 0.663 32 H 0.042 0.958 33 H 0.010 0.990 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 -16.572 8.775 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.235 4.235 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.021 4.021 8 N -0.306 5.306 9 C -0.007 4.007 10 C 0.025 3.975 11 C -0.516 4.516 12 H 0.062 0.938 13 C -0.176 4.176 14 N -0.550 5.550 15 Si 0.769 3.231 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.209 1.209 19 C -0.226 4.226 20 C -0.203 4.203 21 C -0.045 4.045 22 C -0.173 4.173 23 C -0.182 4.182 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.319 -16.313 8.634 18.753 hybrid contribution -0.297 0.753 -0.320 0.871 sum -3.617 -15.560 8.313 18.009 Atomic orbital electron populations 1.23315 0.76684 1.05501 1.02048 1.86019 1.23274 1.26638 1.88800 1.19134 0.92620 0.84478 0.96635 1.21356 1.00878 0.91778 1.09452 1.20988 0.94113 0.97645 0.96285 1.19675 0.93883 0.94389 1.04455 1.20727 0.98083 0.93267 0.90028 1.60249 1.46455 1.03726 1.20167 1.21207 0.93984 0.89908 0.95555 1.18924 0.87638 0.98475 0.92511 1.20552 1.12648 0.95311 1.23087 0.93762 1.25535 0.98673 0.96354 0.97000 1.70106 1.43474 1.04004 1.37455 0.85760 0.79815 0.77815 0.79731 1.19700 1.21092 1.20884 1.22981 1.04207 0.95048 1.00351 1.22434 1.04082 0.92592 1.01204 1.19750 0.96945 0.91370 0.96399 1.20902 0.89659 1.03307 1.03386 1.20415 0.91582 0.98278 1.07881 0.92314 0.86069 0.91788 0.83782 0.85750 0.91917 0.94013 0.84408 0.93912 0.97214 0.93552 0.89141 0.90771 0.92540 0.90915 0.89563 0.89663 0.92190 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.63 10.50 -92.37 -0.97 -8.60 16 3 C 0.12 3.01 6.69 22.51 0.15 3.16 16 4 C -0.22 -5.51 9.04 22.37 0.20 -5.31 16 5 C -0.07 -2.09 9.66 22.25 0.21 -1.87 16 6 C -0.12 -3.70 5.39 -19.85 -0.11 -3.81 16 7 C 0.11 3.52 5.03 85.56 0.43 3.95 16 8 N -0.67 -26.22 6.34 -517.94 -3.28 -29.50 16 9 C 0.12 5.42 5.51 86.30 0.48 5.89 16 10 C 0.03 1.23 1.55 -52.93 -0.08 1.15 16 11 C -0.48 -26.47 8.74 25.60 0.22 -26.25 16 12 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 13 C 0.02 1.30 5.39 84.66 0.46 1.75 16 14 N -0.91 -52.65 12.92 21.45 0.28 -52.38 16 15 Si 0.94 44.79 29.54 68.60 2.03 46.82 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 C -0.19 -7.91 9.96 30.62 0.30 -7.61 16 20 C -0.16 -7.72 9.41 30.62 0.29 -7.43 16 21 C -0.04 -1.16 5.87 -19.88 -0.12 -1.28 16 22 C -0.12 -2.49 9.22 71.24 0.66 -1.83 16 23 C -0.16 -4.14 9.64 22.37 0.22 -3.92 16 24 H 0.06 0.82 7.67 -2.39 -0.02 0.81 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 0.80 7.65 -2.38 -0.02 0.79 16 27 H 0.14 2.93 6.30 -2.91 -0.02 2.91 16 28 H 0.12 3.55 8.03 -2.91 -0.02 3.52 16 29 H 0.06 2.17 8.00 -2.38 -0.02 2.15 16 30 H 0.04 1.24 7.27 -2.39 -0.02 1.22 16 31 H 0.34 12.21 7.03 -89.69 -0.63 11.58 16 32 H 0.04 2.16 8.13 -2.39 -0.02 2.14 16 33 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 41 H 0.06 1.43 5.26 -2.39 -0.01 1.41 16 42 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -63.39 346.09 2.85 -60.54 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.37 Total: 25.16 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 4.43 Total: -42.03 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -3.01 Total: -81.88 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.97 Total: -8.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -63.39 2.85 -60.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922084673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.074 kcal (2) G-P(sol) polarization free energy of solvation -63.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds