Wall clock time and date at job start Mon Mar 30 2020 02:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38237 * 119.99652 * 2 1 4 4 C 1.38244 * 119.99678 * 180.02562 * 3 2 1 5 5 C 1.38231 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99750 * 179.97438 * 5 4 3 7 7 H 1.09005 * 110.41801 * 342.31758 * 6 5 4 8 8 C 1.54909 * 110.37136 * 104.62810 * 6 5 4 9 9 C 1.55140 * 101.64783 * 155.90089 * 8 6 5 10 10 C 1.54311 * 103.02352 * 324.34575 * 9 8 6 11 11 N 1.47449 * 107.23220 * 22.28584 * 10 9 8 12 12 C 1.46899 * 110.99925 * 123.25698 * 11 10 9 13 13 C 1.52997 * 109.47254 * 69.87450 * 12 11 10 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 13 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 13 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38232 * 120.00503 * 0.25718 * 5 4 3 25 25 C 1.38230 * 120.00089 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47551 * 89.99680 * 1 2 3 27 27 H 1.09001 * 109.47276 * 209.99911 * 1 2 3 28 28 H 1.09003 * 109.46879 * 329.99170 * 1 2 3 29 29 H 1.07991 * 120.00449 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.99484 * 179.97438 * 4 3 2 31 31 H 1.08997 * 110.99166 * 37.81163 * 8 6 5 32 32 H 1.08997 * 111.02537 * 274.00636 * 8 6 5 33 33 H 1.09003 * 110.70397 * 205.95844 * 9 8 6 34 34 H 1.09003 * 110.85517 * 82.80284 * 9 8 6 35 35 H 1.08997 * 109.89165 * 262.88043 * 10 9 8 36 36 H 1.09004 * 110.02521 * 141.76705 * 10 9 8 37 37 H 1.09002 * 109.47043 * 189.87520 * 12 11 10 38 38 H 1.09001 * 109.47354 * 309.87582 * 12 11 10 39 39 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 40 40 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00120 * 179.72271 * 24 5 4 42 42 H 1.08002 * 119.99986 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1588 0.9732 -0.3127 8 6 6.3190 -0.3661 1.4032 9 6 7.7281 -0.9188 1.0626 10 6 7.5020 -1.6431 -0.2811 11 7 6.2927 -1.0620 -0.8926 12 6 6.5827 -0.5314 -2.2314 13 6 6.8532 -1.6912 -3.1919 14 1 5.9759 -2.3363 -3.2390 15 8 7.9741 -2.4448 -2.7252 16 6 7.1501 -1.1470 -4.5655 17 1 7.1467 -0.0806 -4.7362 18 6 7.4272 -2.0105 -5.6041 19 7 7.6868 -1.5355 -6.8027 20 14 7.4353 -3.8549 -5.3084 21 1 6.0747 -4.4004 -5.5464 22 1 8.3970 -4.5010 -6.2373 23 1 7.8404 -4.1297 -3.9064 24 6 3.5805 -1.1971 -0.0054 25 6 2.1982 -1.1971 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6582 2.1324 0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.7016 -1.1326 1.8714 32 1 6.3890 0.5174 2.0377 33 1 8.0620 -1.6202 1.8272 34 1 8.4459 -0.1067 0.9467 35 1 7.3542 -2.7090 -0.1076 36 1 8.3593 -1.4897 -0.9366 37 1 5.7278 0.0434 -2.5874 38 1 7.4601 0.1136 -2.1844 39 1 8.7918 -1.9331 -2.6583 40 1 7.8814 -2.1430 -7.5334 41 1 4.1206 -2.1324 -0.0099 42 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929088963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:25 Heat of formation + Delta-G solvation = -23.806657 kcal Electronic energy + Delta-G solvation = -21628.188134 eV Core-core repulsion = 18572.682031 eV Total energy + Delta-G solvation = -3055.506103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79876 -38.27523 -35.91789 -32.96499 -32.22579 -31.62617 -30.71560 -29.02556 -28.13032 -25.78680 -24.41135 -22.59125 -21.57122 -21.16560 -20.15023 -19.70579 -17.23984 -16.44229 -15.69563 -15.04493 -14.90442 -14.76157 -14.54261 -14.30166 -13.83873 -13.73418 -13.22044 -13.14392 -13.00377 -12.61159 -12.50569 -12.21754 -12.03200 -11.92198 -11.66902 -11.39066 -11.02045 -10.87650 -10.85963 -10.64403 -10.59076 -10.32015 -10.26828 -9.91952 -8.98548 -8.70761 -8.59819 -8.32779 -8.10848 -7.82644 -6.10330 -4.21330 1.50465 1.62788 3.42823 3.51493 3.78271 3.89285 4.38429 4.56913 4.78152 4.93164 4.95607 4.99954 5.16593 5.20063 5.23958 5.32539 5.34490 5.54477 5.56391 5.65733 5.71046 5.79725 5.84324 5.89454 5.92028 6.01562 6.03473 6.14670 6.19681 6.27097 6.32193 6.39164 6.52841 6.63298 6.71942 6.76274 6.88688 7.21406 7.30606 7.51823 7.55266 7.78076 8.30516 8.85250 9.03763 9.54787 11.00407 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.005382 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.916042 B = 5201.355133 C = 6110.657099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.067 4.067 6 C 0.107 3.893 7 H 0.057 0.943 8 C -0.117 4.117 9 C -0.147 4.147 10 C 0.053 3.947 11 N -0.520 5.520 12 C 0.039 3.961 13 C 0.202 3.798 14 H 0.061 0.939 15 O -0.576 6.576 16 C -0.564 4.564 17 H 0.070 0.930 18 C 0.084 3.916 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.216 1.216 24 C -0.079 4.079 25 C -0.127 4.127 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.350 0.650 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 3.276 17.757 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.134 4.134 5 C -0.068 4.068 6 C -0.002 4.002 7 H 0.075 0.925 8 C -0.155 4.155 9 C -0.186 4.186 10 C -0.075 4.075 11 N -0.244 5.244 12 C -0.088 4.088 13 C 0.145 3.855 14 H 0.079 0.921 15 O -0.382 6.382 16 C -0.602 4.602 17 H 0.088 0.912 18 C -0.120 4.120 19 N -0.532 5.532 20 Si 0.699 3.301 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.138 1.138 24 C -0.097 4.097 25 C -0.145 4.145 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.197 0.803 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.386 2.374 17.531 19.578 hybrid contribution 0.940 0.382 -0.294 1.057 sum -7.446 2.755 17.237 18.977 Atomic orbital electron populations 1.20757 0.91699 1.02247 1.02133 1.19856 0.95719 0.93384 1.00598 1.20877 0.94023 0.97225 1.02280 1.20976 0.94140 0.97443 1.00814 1.19715 0.94659 0.93048 0.99366 1.21436 0.91077 0.94782 0.92886 0.92489 1.22702 0.96250 1.00800 0.95738 1.22903 0.96679 1.00168 0.98821 1.22883 0.92425 0.99194 0.92977 1.63429 1.29279 1.29288 1.02377 1.22893 0.99363 0.98374 0.88214 1.19729 0.86368 0.88879 0.90553 0.92119 1.86759 1.20374 1.42121 1.88963 1.21512 1.50686 0.95389 0.92595 0.91220 1.24987 0.92697 0.99952 0.94407 1.69964 1.46299 1.35879 1.01052 0.87000 0.77451 0.84520 0.81081 1.21459 1.22464 1.13817 1.21023 0.93272 0.98528 0.96925 1.21045 0.94441 0.97220 1.01774 0.91376 0.91846 0.91949 0.86607 0.86610 0.90741 0.91393 0.91220 0.91926 0.90809 0.91338 0.91200 0.95326 0.80346 0.92640 0.85267 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.10 -1.18 5.88 -104.62 -0.62 -1.80 16 3 C -0.13 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.12 -1.54 9.68 -39.58 -0.38 -1.92 16 5 C -0.07 -0.98 5.03 -104.62 -0.53 -1.51 16 6 C 0.11 1.55 2.58 -67.34 -0.17 1.38 16 7 H 0.06 0.84 7.70 -51.93 -0.40 0.44 16 8 C -0.12 -1.42 6.47 -24.59 -0.16 -1.58 16 9 C -0.15 -1.80 6.94 -24.91 -0.17 -1.97 16 10 C 0.05 0.81 5.52 -2.84 -0.02 0.79 16 11 N -0.52 -8.81 4.10 -224.75 -0.92 -9.73 16 12 C 0.04 0.78 4.40 -3.83 -0.02 0.77 16 13 C 0.20 4.73 2.57 -27.89 -0.07 4.66 16 14 H 0.06 1.53 7.57 -51.93 -0.39 1.14 16 15 O -0.58 -12.64 7.75 -35.23 -0.27 -12.92 16 16 C -0.56 -15.75 9.34 -34.44 -0.32 -16.07 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 19 N -0.89 -27.55 13.96 55.43 0.77 -26.78 16 20 Si 0.87 22.10 26.99 -169.99 -4.59 17.51 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.22 -5.30 5.30 56.52 0.30 -5.00 16 24 C -0.08 -1.16 9.19 -39.58 -0.36 -1.53 16 25 C -0.13 -1.68 9.70 -39.58 -0.38 -2.07 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.09 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.36 8.04 -52.49 -0.42 0.94 16 31 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.10 5.19 -51.93 -0.27 0.83 16 37 H 0.07 1.46 8.07 -51.93 -0.42 1.04 16 38 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 39 H 0.35 6.88 7.92 45.56 0.36 7.24 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 41 H 0.13 1.96 7.74 -52.49 -0.41 1.56 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -31.01 332.21 -9.56 -40.56 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.23 Total: 7.50 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -3.32 Total: -21.16 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.15 Total: -36.51 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.27 Total: -12.92 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.01 -9.56 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929088963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.758 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds