Wall clock time and date at job start Mon Mar 30 2020 02:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38237 * 119.99652 * 2 1 4 4 C 1.38244 * 119.99678 * 180.02562 * 3 2 1 5 5 C 1.38231 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99750 * 179.97438 * 5 4 3 7 7 H 1.09005 * 110.41801 * 342.31758 * 6 5 4 8 8 C 1.54909 * 110.37136 * 104.62810 * 6 5 4 9 9 C 1.55140 * 101.64783 * 155.90089 * 8 6 5 10 10 C 1.54311 * 103.02352 * 324.34575 * 9 8 6 11 11 N 1.47449 * 107.23220 * 22.28584 * 10 9 8 12 12 C 1.46899 * 110.99925 * 123.25698 * 11 10 9 13 13 C 1.52997 * 109.47254 * 69.87450 * 12 11 10 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 13 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 13 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38232 * 120.00503 * 0.25718 * 5 4 3 25 25 C 1.38230 * 120.00089 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47551 * 89.99680 * 1 2 3 27 27 H 1.09001 * 109.47276 * 209.99911 * 1 2 3 28 28 H 1.09003 * 109.46879 * 329.99170 * 1 2 3 29 29 H 1.07991 * 120.00449 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.99484 * 179.97438 * 4 3 2 31 31 H 1.08997 * 110.99166 * 37.81163 * 8 6 5 32 32 H 1.08997 * 111.02537 * 274.00636 * 8 6 5 33 33 H 1.09003 * 110.70397 * 205.95844 * 9 8 6 34 34 H 1.09003 * 110.85517 * 82.80284 * 9 8 6 35 35 H 1.08997 * 109.89165 * 262.88043 * 10 9 8 36 36 H 1.09004 * 110.02521 * 141.76705 * 10 9 8 37 37 H 1.09002 * 109.47043 * 189.87520 * 12 11 10 38 38 H 1.09001 * 109.47354 * 309.87582 * 12 11 10 39 39 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 40 40 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00120 * 179.72271 * 24 5 4 42 42 H 1.08002 * 119.99986 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1588 0.9732 -0.3127 8 6 6.3190 -0.3661 1.4032 9 6 7.7281 -0.9188 1.0626 10 6 7.5020 -1.6431 -0.2811 11 7 6.2927 -1.0620 -0.8926 12 6 6.5827 -0.5314 -2.2314 13 6 6.8532 -1.6912 -3.1919 14 1 5.9759 -2.3363 -3.2390 15 8 7.9741 -2.4448 -2.7252 16 6 7.1501 -1.1470 -4.5655 17 1 7.1467 -0.0806 -4.7362 18 6 7.4272 -2.0105 -5.6041 19 7 7.6868 -1.5355 -6.8027 20 14 7.4353 -3.8549 -5.3084 21 1 6.0747 -4.4004 -5.5464 22 1 8.3970 -4.5010 -6.2373 23 1 7.8404 -4.1297 -3.9064 24 6 3.5805 -1.1971 -0.0054 25 6 2.1982 -1.1971 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6582 2.1324 0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.7016 -1.1326 1.8714 32 1 6.3890 0.5174 2.0377 33 1 8.0620 -1.6202 1.8272 34 1 8.4459 -0.1067 0.9467 35 1 7.3542 -2.7090 -0.1076 36 1 8.3593 -1.4897 -0.9366 37 1 5.7278 0.0434 -2.5874 38 1 7.4601 0.1136 -2.1844 39 1 8.7918 -1.9331 -2.6583 40 1 7.8814 -2.1430 -7.5334 41 1 4.1206 -2.1324 -0.0099 42 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929088963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:24 Heat of formation + Delta-G solvation = -43.168743 kcal Electronic energy + Delta-G solvation = -21629.027737 eV Core-core repulsion = 18572.682031 eV Total energy + Delta-G solvation = -3056.345706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.93050 -39.47155 -37.61053 -34.46018 -33.92642 -33.02091 -31.71894 -30.02966 -29.93383 -26.83253 -26.15631 -23.61257 -22.80650 -22.51331 -21.58245 -20.86461 -19.28127 -17.54525 -17.02717 -16.68283 -16.35453 -16.19105 -15.93074 -15.71620 -15.25421 -14.86549 -14.58218 -14.24568 -14.17338 -14.00860 -13.75582 -13.64546 -13.32462 -13.03441 -12.93992 -12.89988 -12.55710 -12.36220 -12.13311 -11.90285 -11.79638 -11.73402 -11.60310 -11.47182 -11.07788 -10.82088 -10.02271 -9.72848 -9.27630 -9.16619 -8.36502 -6.51130 0.49465 0.60567 1.40040 1.44437 1.74950 2.43563 2.84511 3.01632 3.13723 3.71766 3.87904 4.00702 4.01415 4.07272 4.16510 4.21352 4.28386 4.36662 4.42208 4.48748 4.61564 4.67053 4.75688 4.86606 4.93420 4.94332 4.96815 5.01612 5.04475 5.11055 5.20948 5.28345 5.35165 5.41195 5.42515 5.53641 5.61394 5.78129 5.80636 6.04832 6.20546 6.25299 6.29985 6.61570 7.17117 7.32719 8.77871 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.005382 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.916042 B = 5201.355133 C = 6110.657099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.084 4.084 6 C 0.106 3.894 7 H 0.054 0.946 8 C -0.108 4.108 9 C -0.137 4.137 10 C 0.049 3.951 11 N -0.528 5.528 12 C 0.057 3.943 13 C 0.215 3.785 14 H 0.046 0.954 15 O -0.572 6.572 16 C -0.566 4.566 17 H 0.033 0.967 18 C 0.030 3.970 19 N -0.940 5.940 20 Si 0.940 3.060 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.202 1.202 24 C -0.097 4.097 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.363 0.637 40 H 0.267 0.733 41 H 0.117 0.883 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 2.978 20.009 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.085 4.085 6 C -0.002 4.002 7 H 0.072 0.928 8 C -0.146 4.146 9 C -0.175 4.175 10 C -0.079 4.079 11 N -0.252 5.252 12 C -0.071 4.071 13 C 0.157 3.843 14 H 0.064 0.936 15 O -0.379 6.379 16 C -0.604 4.604 17 H 0.052 0.948 18 C -0.169 4.169 19 N -0.580 5.580 20 Si 0.764 3.236 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.123 1.123 24 C -0.115 4.115 25 C -0.155 4.155 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.211 0.789 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.012 2.085 19.809 21.863 hybrid contribution 1.098 0.557 -0.990 1.580 sum -7.914 2.642 18.819 20.586 Atomic orbital electron populations 1.20805 0.89489 1.03635 1.02723 1.20244 0.97443 0.92970 0.99395 1.21223 0.93876 0.98365 1.01407 1.21209 0.94869 0.97559 1.00721 1.19807 0.94695 0.93564 1.00434 1.21497 0.91289 0.93758 0.93694 0.92825 1.22676 0.95857 1.01654 0.94423 1.22843 0.96912 1.00467 0.97298 1.22881 0.91325 0.99090 0.94559 1.63334 1.30157 1.30190 1.01491 1.22483 0.98544 0.96572 0.89538 1.19390 0.86190 0.89523 0.89222 0.93593 1.86679 1.20657 1.42036 1.88556 1.21834 1.49752 0.93810 0.95040 0.94819 1.25836 0.92497 1.04506 0.94081 1.70084 1.48206 1.37514 1.02156 0.85974 0.77139 0.78971 0.81471 1.21653 1.22379 1.12340 1.21031 0.94075 0.98156 0.98262 1.21283 0.94103 0.98436 1.01711 0.91039 0.90773 0.90353 0.84304 0.85353 0.90765 0.89304 0.89265 0.91088 0.91571 0.92175 0.92844 0.95430 0.78873 0.92444 0.86496 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.08 16 2 C -0.10 -2.31 5.88 -19.87 -0.12 -2.43 16 3 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.13 -3.19 9.68 22.27 0.22 -2.98 16 5 C -0.08 -2.40 5.03 -19.87 -0.10 -2.50 16 6 C 0.11 2.96 2.58 44.64 0.12 3.08 16 7 H 0.05 1.54 7.70 -2.38 -0.02 1.52 16 8 C -0.11 -2.39 6.47 31.98 0.21 -2.18 16 9 C -0.14 -2.99 6.94 31.77 0.22 -2.77 16 10 C 0.05 1.43 5.52 86.64 0.48 1.91 16 11 N -0.53 -17.60 4.10 -864.97 -3.55 -21.15 16 12 C 0.06 2.30 4.40 86.30 0.38 2.68 16 13 C 0.21 10.08 2.57 29.85 0.08 10.16 16 14 H 0.05 2.32 7.57 -2.39 -0.02 2.30 16 15 O -0.57 -24.44 7.75 -148.98 -1.15 -25.60 16 16 C -0.57 -32.32 9.34 25.60 0.24 -32.08 16 17 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 18 C 0.03 1.79 5.47 84.65 0.46 2.25 16 19 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 20 Si 0.94 46.02 26.99 68.60 1.85 47.87 16 21 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 23 H -0.20 -9.33 5.30 99.48 0.53 -8.80 16 24 C -0.10 -2.82 9.19 22.27 0.20 -2.61 16 25 C -0.14 -3.52 9.70 22.27 0.22 -3.30 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.14 2.47 8.06 -2.92 -0.02 2.45 16 30 H 0.13 2.83 8.04 -2.91 -0.02 2.81 16 31 H 0.07 1.66 7.92 -2.39 -0.02 1.64 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.85 5.19 -2.38 -0.01 1.84 16 37 H 0.05 2.29 8.07 -2.39 -0.02 2.27 16 38 H 0.03 1.10 7.96 -2.39 -0.02 1.08 16 39 H 0.36 13.82 7.92 -74.06 -0.59 13.23 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.12 3.59 7.74 -2.91 -0.02 3.56 16 42 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -67.16 332.21 1.20 -65.96 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.23 Total: 26.46 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.53 Total: -34.68 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.25 Total: -80.02 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.15 Total: -25.60 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.85 Total: 47.87 kcal Total: -67.16 1.20 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929088963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.787 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds